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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913243
Clone id YMU001_000028_B02
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGAAAGCCAGTGGTAAAGGCAATGGCACAACTTATCATGTAAGGGGCAGGTCAGAGAA
AAGGAACAATGTAGCTAACAGGGGCAAGAGTAGAAGTAAGAGCAAGGGAAAATCTCTTGC
TATCAATGTGGACGCAAAGGGCATAAAAAGACTGATTGCAGATTTTACAAACAAGAGCTT
GAAAGGAAGAAGCAGCAGCAGGGTAAGAAGAAGAAGGATGCAAAAGATGCTAAAGGTGAT
GATGACACCTCCTCTTCTTCCAAGGATGTTGGCAAGGCAAATGTGGCCTCTAGTGTGGTC
ATAGAGGAAATTGTTGATGTGGACGAAGCACTTGTCGTAGCTTCGAGTCTTTGATAATGT
TGTGGCTATGGCAAGTGATATGTATATCACGAAGCCAGATCTTATTGACGCTTTGCTTTC
AACACATGATGGGCTGTCCGAGTCTTGGATAGTAGACAGTGGTGCCTCATTTCATGTAAC
TTCTTCTTTGGAGTCTTTTGCCACATACACTGCAGGTAACCTGCGTAAAGTTTACTTGGG
TAATAACTATGCATGTGACATTGAGGGTG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 46
Score (bit) 36.2
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913243|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B02.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    36   0.12 
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    35   0.20 
sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein...    33   0.99 
sp|Q8WYQ9|ZCH14_HUMAN Zinc finger CCHC domain-containing protein...    33   0.99 
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain...    32   1.7  
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain...    32   1.7  
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain...    32   1.7  
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ...    32   1.7  
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Ratt...    32   2.2  
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Po...    32   2.2  
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mu...    32   2.2  
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Ho...    32   2.2  
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga...    32   2.2  
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bo...    32   2.2  
sp|Q9HBE1|PATZ1_HUMAN POZ-, AT hook-, and zinc finger-containing...    29   2.9  
sp|Q498S6|ZCHC2_RAT Zinc finger CCHC domain-containing protein 2...    31   3.8  
sp|Q69ZB8|ZCHC2_MOUSE Zinc finger CCHC domain-containing protein...    31   3.8  
sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein...    31   3.8  
sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficienc...    31   4.9  
sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency vi...    31   4.9  
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein...    30   6.4  
sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 OS...    30   6.4  
sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 OS...    30   6.4  
sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 OS...    30   6.4  
sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis...    30   8.4  
sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficien...    30   8.4  
sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficienc...    30   8.4  
sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficienc...    30   8.4  
sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency v...    30   8.4  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 431 GLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           G    W+VD+ AS H T   + F  Y AG+   V +GN     I G
Sbjct: 289 GPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAG 334


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
           GN=GIP PE=1 SV=3
          Length = 1409

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 109 KISCYQCGRKGHKKTDCRFYKQEL 180
           K+ C+ CGR+GH K DC  YK+ L
Sbjct: 229 KVKCHHCGREGHIKKDCFHYKRIL 252


>sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein 14
           OS=Mus musculus GN=Zcchc14 PE=2 SV=1
          Length = 956

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 100 EQGKISCYQCGRKGHKKTDCRFYKQELER 186
           + G +SCY CG  GH+  DC+    +  R
Sbjct: 909 KSGNLSCYNCGATGHRAQDCKQPSMDFNR 937


>sp|Q8WYQ9|ZCH14_HUMAN Zinc finger CCHC domain-containing protein 14
           OS=Homo sapiens GN=ZCCHC14 PE=1 SV=1
          Length = 949

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 100 EQGKISCYQCGRKGHKKTDCRFYKQELER 186
           + G +SCY CG  GH+  DC+    +  R
Sbjct: 902 KSGNLSCYNCGATGHRAQDCKQPSMDFNR 930


>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain
           KV1772) GN=gag PE=3 SV=1
          Length = 442

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 112 ISCYQCGRKGHKKTDCRFYKQE 177
           I C+ CG++GH + DCR  KQ+
Sbjct: 404 IICHHCGKRGHMQKDCRQKKQQ 425


>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS2) GN=gag PE=3 SV=1
          Length = 442

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 112 ISCYQCGRKGHKKTDCRFYKQE 177
           I C+ CG++GH + DCR  KQ+
Sbjct: 404 IICHHCGKRGHMQKDCRQKKQQ 425


>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS1) GN=gag PE=3 SV=1
          Length = 442

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 112 ISCYQCGRKGHKKTDCRFYKQE 177
           I C+ CG++GH + DCR  KQ+
Sbjct: 404 IICHHCGKRGHMQKDCRQKKQQ 425


>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain
           1514) GN=gag PE=3 SV=1
          Length = 442

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 112 ISCYQCGRKGHKKTDCRFYKQE 177
           I C+ CG++GH + DCR  KQ+
Sbjct: 404 IICHHCGKRGHMQKDCRQKKQQ 425


>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus
           norvegicus GN=Cnbp PE=2 SV=1
          Length = 177

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 40  CKGQVREKEQCS*QGQE*K*EQGKISCYQCGRKGHKKTDC 159
           CK   RE+EQC               CY CG+ GH   DC
Sbjct: 87  CKEPKREREQC---------------CYNCGKPGHLARDC 111



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 SCYQCGRKGHKKTDCRFYKQELER 186
           +CY CGR GH   DC+  K+E E+
Sbjct: 73  ACYNCGRGGHIAKDCKEPKREREQ 96


>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo
           abelii GN=CNBP PE=2 SV=1
          Length = 177

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 40  CKGQVREKEQCS*QGQE*K*EQGKISCYQCGRKGHKKTDC 159
           CK   RE+EQC               CY CG+ GH   DC
Sbjct: 87  CKEPKREREQC---------------CYNCGKPGHLARDC 111



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 SCYQCGRKGHKKTDCRFYKQELER 186
           +CY CGR GH   DC+  K+E E+
Sbjct: 73  ACYNCGRGGHIAKDCKEPKREREQ 96
tr_hit_id A7R7G1
Definition tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 53.9
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913243|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B02.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    54   6e-06
tr|A7R1U7|A7R1U7_VITVI Chromosome undetermined scaffold_377, who...    54   6e-06
tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, who...    54   6e-06
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis...    54   8e-06
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    52   2e-05
tr|A7QAU0|A7QAU0_VITVI Chromosome chr5 scaffold_72, whole genome...    52   2e-05
tr|A7Q007|A7Q007_VITVI Chromosome chr8 scaffold_41, whole genome...    52   2e-05
tr|A7PQ76|A7PQ76_VITVI Chromosome chr18 scaffold_24, whole genom...    52   2e-05
tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ...    52   2e-05
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...    52   2e-05
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    52   2e-05
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05

>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009987001 PE=4 SV=1
          Length = 466

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = +2

Query: 407 DALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           DALL T D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 213 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 266


>tr|A7R1U7|A7R1U7_VITVI Chromosome undetermined scaffold_377, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012412001 PE=4 SV=1
          Length = 323

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = +2

Query: 407 DALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           +ALL T D   + W++DSGASFH T   E    Y AG+  KVYL N  A D+ G
Sbjct: 237 NALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLANGSALDVVG 290


>tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002150001 PE=4 SV=1
          Length = 315

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = +2

Query: 407 DALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           DALL T D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 227 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 280


>tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038889 PE=4 SV=1
          Length = 925

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%)
 Frame = +2

Query: 398 DLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           D+ DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 271 DVQDALLFAIDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 327


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044399 PE=4 SV=1
          Length = 1264

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +2

Query: 398 DLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           ++ DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 326


>tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032634 PE=4 SV=1
          Length = 1298

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +2

Query: 398 DLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           ++ DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 326


>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037906 PE=4 SV=1
          Length = 1148

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = +2

Query: 392 KPDLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           + +++DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +    D+ G
Sbjct: 267 REEVLDALLLAVDSPLDDWVLDSGASFHTTPYREIIQNYVAGDFGKVYLADGSTLDVVG 325


>tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008497 PE=4 SV=1
          Length = 1149

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/57 (45%), Positives = 32/57 (56%)
 Frame = +2

Query: 398 DLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           ++ DALL   D   + W++DSGASFH T   E    Y AG   KVYL +  A DI G
Sbjct: 233 EIQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGGFGKVYLADGSALDIVG 289


>tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028182 PE=4 SV=1
          Length = 815

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +2

Query: 386 ITKPDLIDALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIE 565
           +   ++ DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ 
Sbjct: 266 VVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVV 325

Query: 566 G 568
           G
Sbjct: 326 G 326


>tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037749001 PE=4 SV=1
          Length = 788

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 25/54 (46%), Positives = 31/54 (57%)
 Frame = +2

Query: 407 DALLSTHDGLSESWIVDSGASFHVTSSLESFATYTAGNLRKVYLGNNYACDIEG 568
           DALL   D   + W++DSGASFH T   E    Y AG+  KVYL +  A D+ G
Sbjct: 556 DALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 609