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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913244
Clone id YMU001_000028_B03
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCCCCACCCCTAGGTGTCGAAGCGGCTGTTATGGGAGAAGAAGGCGTCGTACCCATAG
GCGTCATGAACCCCGTAGGCGTCCCCCCCTAGGCGTCGGTCCCTCGGGTGTGAATCCCAG
AGGCGTAGTACCCGTGCCTCTGGCTACCCAGTACTGAGAAGCCTCTGCCATCTGAGCAGG
CATCATCCGTGTAACGAAGCCCATGAATGCATTTGCACTCATGGAAGTGGCATCTGGAAT
CTCGCCTGCCATACTAAAGTCCTGCACAAAGAAAGTAAAATAAAGCGTCAGAACACAGTA
ACTGTTTAAATTAACTTTAAGCTTAATTTTAAATCAAAGTCTTCACACAAACACTTACAG
GCCTAGGCCTCGACGAGTGAGGCATCATCGATAAGATCTTGCACCGTATCATCGTCTATC
TCTAATTGGAAACATAACTCTGTCCCAACTCGTTCTAGAAGATTGTCTTCATCCATTGCA
TCTTCATCTACAAGTGTCAATTCTGGCTCGTCTACGTCATCCCGCGAATTCTTC
■■Homology search results ■■ -
sp_hit_id Q5QNQ6
Definition sp|Q5QNQ6|OSBP2_MOUSE Oxysterol-binding protein 2 OS=Mus musculus
Align length 28
Score (bit) 33.1
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913244|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B03.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5QNQ6|OSBP2_MOUSE Oxysterol-binding protein 2 OS=Mus musculu...    33   0.81 
sp|Q969R2|OSBP2_HUMAN Oxysterol-binding protein 2 OS=Homo sapien...    32   1.4  

>sp|Q5QNQ6|OSBP2_MOUSE Oxysterol-binding protein 2 OS=Mus musculus
           GN=Osbp2 PE=2 SV=1
          Length = 908

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 LRSLCHLSRHHPCNEAHECICTHGSGIW 237
           LRSLC    HHP + AH     HG  +W
Sbjct: 614 LRSLCEQVSHHPPSAAHHVFSKHGWSLW 641


>sp|Q969R2|OSBP2_HUMAN Oxysterol-binding protein 2 OS=Homo sapiens
           GN=OSBP2 PE=2 SV=2
          Length = 916

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 LRSLCHLSRHHPCNEAHECICTHGSGIW 237
           LRSLC    HHP + AH     HG  +W
Sbjct: 617 LRSLCEQVSHHPPSAAHYVFSKHGWSLW 644
tr_hit_id Q8K0C7
Definition tr|Q8K0C7|Q8K0C7_MOUSE Oxysterol-binding protein OS=Mus musculus
Align length 28
Score (bit) 33.1
E-value 8.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913244|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B03.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8K0C7|Q8K0C7_MOUSE Oxysterol-binding protein OS=Mus musculus...    33   8.5  
tr|Q6PE09|Q6PE09_MOUSE Oxysterol-binding protein OS=Mus musculus...    33   8.5  
tr|Q5QNQ4|Q5QNQ4_MOUSE Oxysterol-binding protein OS=Mus musculus...    33   8.5  

>tr|Q8K0C7|Q8K0C7_MOUSE Oxysterol-binding protein OS=Mus musculus
           GN=Osbp2 PE=2 SV=1
          Length = 455

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 LRSLCHLSRHHPCNEAHECICTHGSGIW 237
           LRSLC    HHP + AH     HG  +W
Sbjct: 161 LRSLCEQVSHHPPSAAHHVFSKHGWSLW 188


>tr|Q6PE09|Q6PE09_MOUSE Oxysterol-binding protein OS=Mus musculus
           GN=Osbp2 PE=2 SV=1
          Length = 544

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 LRSLCHLSRHHPCNEAHECICTHGSGIW 237
           LRSLC    HHP + AH     HG  +W
Sbjct: 250 LRSLCEQVSHHPPSAAHHVFSKHGWSLW 277


>tr|Q5QNQ4|Q5QNQ4_MOUSE Oxysterol-binding protein OS=Mus musculus
           GN=Osbp2 PE=2 SV=1
          Length = 497

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 154 LRSLCHLSRHHPCNEAHECICTHGSGIW 237
           LRSLC    HHP + AH     HG  +W
Sbjct: 203 LRSLCEQVSHHPPSAAHHVFSKHGWSLW 230