NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913245
Clone id YMU001_000028_B04
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAATGATATCTCTGCCTCTGAATATATCCTCGAAGATCCCTGATTCAAATCTTAGCCCCA
TTGTAATTTCATACAGCTAGCTTCAAAGAGGTCCCACAGGTCTTCTAGCATCATTTGGAG
TGATGCTCCAAAATAACGACCTTCCCACCTTTATAAGATGCCAATTTTCCTTCTCGCCCA
GCTGCCAGTATCCTAGGCATACATTTGCGTTATGTGCTAGCTGATTTGGAGTGAGGTCCT
CTCCTAAAAATAAACGTGTGCCCTTAAGTGTTCTTAGAGCAATGAATTCTGTCCTAGTTT
CTATCAACGGAGAGCTTAGGATAACAGCTCCATCCTTGGAGCTTTCTCCCA
■■Homology search results ■■ -
sp_hit_id Q9Z408
Definition sp|Q9Z408|CSD_PSEPK Probable cysteine desulfurase OS=Pseudomonas putida (strain KT2440)
Align length 56
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913245|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B04.
         (351 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z408|CSD_PSEPK Probable cysteine desulfurase OS=Pseudomonas...    30   3.7  
sp|P10810|CD14_MOUSE Monocyte differentiation antigen CD14 OS=Mu...    29   6.3  

>sp|Q9Z408|CSD_PSEPK Probable cysteine desulfurase OS=Pseudomonas
           putida (strain KT2440) GN=csdA PE=3 SV=1
          Length = 401

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 256 RLFLGEDLTPNQLAHNANVCLGYWQLGEKENWHLIKVGRSLFWSITPNDARRPVGP 89
           RL  G+++  + L H+AN+ L + QL  + N HL+ +       I  + A + +GP
Sbjct: 106 RLEAGDEIAISALEHHANL-LPWQQLAHRRNLHLVVLPLDAHGRIDQDQALQLIGP 160


>sp|P10810|CD14_MOUSE Monocyte differentiation antigen CD14 OS=Mus
           musculus GN=Cd14 PE=1 SV=1
          Length = 366

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +3

Query: 90  GPTGLLASFGVMLQNNDLPTFIRCQFSFSPSCQYPRHTFALCAS*FGVRSSPKNKRVPLS 269
           G    LA+  V LQ  DL        + +PSC +P    +L  S  G++  PK     LS
Sbjct: 235 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 294

Query: 270 VL 275
           VL
Sbjct: 295 VL 296
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913245|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B04.
         (351 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******