BP913246
Clone id YMU001_000028_B05
Library
Length 277
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGTACTCACGCCCACGACATACTTGAGAGTGACAGGAGTCATGCTTGTCCAACCTGCTG
CTCACAGGGGAGTAATATTGCAACAATGGCTGAGTCACTGCGATAGGGGCAGTGGGTCAT
GTCTCCTGCTCCATGCTTGAAATATACTGCAGAAGCTTCAGCTTCTTTCTTGTTAGCTGA
TTGACCGGCACAGACGAGTCTAGCCACCTATACAACTCTTTACAGCGTAATCTATGCACA
ATGAAATTATCTATCTCAATAGAAGCGATTCCATCCT
■■Homology search results ■■ -
sp_hit_id B0K1Y9
Definition sp|B0K1Y9|RLMN_THEPX Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter sp. (strain X514)
Align length 57
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913246|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B05.
(277 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|B0K1Y9|RLMN_THEPX Ribosomal RNA large subunit methyltransfera... 30 3.8
sp|B0KA06|RLMN_THEP3 Ribosomal RNA large subunit methyltransfera... 30 3.8
sp|P20409|TRPG_PHYBL Anthranilate synthase component 2 OS=Phycom... 29 8.3

>sp|B0K1Y9|RLMN_THEPX Ribosomal RNA large subunit methyltransferase
N OS=Thermoanaerobacter sp. (strain X514) GN=rlmN PE=3
SV=1
Length = 342

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = -3

Query: 257 EIDNFIVH----RLRCKELYRWL--------DSSVPVNQLTRKKLKLLQYISSMEQE 123
E++ F V+ R R K++Y+W+ D +++ R KLK + Y+S ++ E
Sbjct: 11 EMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAYVSQLKIE 67


>sp|B0KA06|RLMN_THEP3 Ribosomal RNA large subunit methyltransferase
N OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=rlmN PE=3 SV=1
Length = 342

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = -3

Query: 257 EIDNFIVH----RLRCKELYRWL--------DSSVPVNQLTRKKLKLLQYISSMEQE 123
E++ F V+ R R K++Y+W+ D +++ R KLK + Y+S ++ E
Sbjct: 11 EMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAYVSQLKIE 67


>sp|P20409|TRPG_PHYBL Anthranilate synthase component 2
OS=Phycomyces blakesleeanus GN=trp1 PE=4 SV=1
Length = 765

Score = 28.9 bits (63), Expect = 8.3
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2

Query: 8 HAHDILESDRSHACPTCCSQGSNIATMAESLR*GQWVMSPAP---CLKYTAEASASFLLA 178
H +E + H C G + + SLR G W +PA K A A+
Sbjct: 159 HKKYTVEGVQFHPESILCEHGHTMISNFLSLRGGNWDENPAAGVLAQKVPAAATEKAAQE 218

Query: 179 D*PAQTSLATYTTLYSVIYAQ 241
PA ++ T +T+ S IYAQ
Sbjct: 219 ASPAISTPPTCSTILSRIYAQ 239


tr_hit_id Q03B50
Definition tr|Q03B50|Q03B50_LACC3 Putative uncharacterized protein OS=Lactobacillus casei (strain ATCC 334)
Align length 62
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913246|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B05.
(277 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q03B50|Q03B50_LACC3 Putative uncharacterized protein OS=Lacto... 33 5.5
tr|B3WC23|B3WC23_LACCB Putative uncharacterized protein OS=Lacto... 33 5.5
tr|Q9SR02|Q9SR02_ARATH F7O18.23 protein (Struwwelpeter 1 protein... 33 9.4

>tr|Q03B50|Q03B50_LACC3 Putative uncharacterized protein
OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_0735
PE=4 SV=1
Length = 302

Score = 33.5 bits (75), Expect = 5.5
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = -3

Query: 257 EIDNFIVHRLRCKELYRWLDSSVPVNQLTRK-----KLKLLQYISSMEQET*PTAPIAVT 93
E++N I + + YR++++++P+++ +K K K Q +S + T +AP+ V+
Sbjct: 170 ELNNTITLKNKTPHSYRYVETNLPLSKSKKKLTSLAKFKTTQETASAQSSTVSSAPVIVS 229

Query: 92 QP 87
QP
Sbjct: 230 QP 231


>tr|B3WC23|B3WC23_LACCB Putative uncharacterized protein
OS=Lactobacillus casei (strain BL23) GN=LCABL_08010 PE=4
SV=1
Length = 302

Score = 33.5 bits (75), Expect = 5.5
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = -3

Query: 257 EIDNFIVHRLRCKELYRWLDSSVPVNQLTRK-----KLKLLQYISSMEQET*PTAPIAVT 93
E++N I + + YR++++++P+++ +K K K Q +S + T +AP+ V+
Sbjct: 170 ELNNTITLKNKTPHSYRYVETNLPLSKSKKKLTSLAKFKTTQETASAQSSTVSSAPVIVS 229

Query: 92 QP 87
QP
Sbjct: 230 QP 231


>tr|Q9SR02|Q9SR02_ARATH F7O18.23 protein (Struwwelpeter 1 protein)
(SWP1) OS=Arabidopsis thaliana GN=swp1 PE=2 SV=1
Length = 1703

Score = 32.7 bits (73), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3

Query: 173 TRKKLKLLQYISSMEQET*PTAPIAV---TQPLLQYYSPVSSRLDKHDSCHSQ 24
T KK+ LL+Y++ +Q +A PL+ Y+ + S L HD C +Q
Sbjct: 41 TEKKVSLLKYVAKTQQRMLRLNALAKWCKQVPLINYFQDLGSTLSAHDICFTQ 93