BP913247 |
Clone id |
YMU001_000028_B06 |
Library |
YMU01 |
Length |
567 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000028_B06. |
Accession |
BP913247 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCAGGAGTTTATGGTCTCAAAGAAACTAGATCTGAAAAGAAGCCCGGAGCAATGGGATTG GTTGAAAGATTGAAGGAAATACGTGATTCAAAGAGCAAGACCGACCAAGAAGCTCTTGAA GAATGGCGCAGGAAGAAGCTGGAAGAAGCAAAAAGGCGCTCAGAGGCTATGAAAGCTAAG CAAGATGAGTACTCATCGTGACAAGCTCTATGTAGATCCTCCTGCCACCTAGATATGGAA TGATCCAGCTTGAGAGGTGCTTTCACAGAAGTGAGACTCAAAAGCTCTTACCAGGGACAA TTGGTTGCTGCTGGCATTGTTTAATGCATTGACTAAAGATGCTCAAATTTTCCAGAAAAA CAAATGGGGCATGTTTATGAATTGTCAATGGTGGCTTCAAGGCAGAATAAGGAAGGTTGC ATCCGCTCGAACAAGTGCGATTCATGGGACATTTTCTATTAGAGATTGAAAATGGGTTGA GGAGTTGAACAGATTCGGCGCATGTGAAACGATGATGTACTGCGACAAGAAAGAGAGACA TGCCTTGTTGCATGTGTGGTTATGTAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q86DC6 |
Definition |
sp|Q86DC6|IFD1_CAEEL Intermediate filament protein ifd-1 OS=Caenorhabditis elegans |
Align length |
43 |
Score (bit) |
37.0 |
E-value |
0.069 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913247|Adiantum capillus-veneris mRNA, clone: YMU001_000028_B06. (567 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q86DC6|IFD1_CAEEL Intermediate filament protein ifd-1 OS=Caen... 37 0.069 sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium disco... 35 0.20 sp|Q6BUT3|NST1_DEBHA Stress response protein NST1 OS=Debaryomyce... 35 0.26 sp|A5DXA0|NST1_LODEL Stress response protein NST1 OS=Lodderomyce... 35 0.34 sp|A5DLJ8|NST1_PICGU Stress response protein NST1 OS=Pichia guil... 34 0.45 sp|Q3IYN5|IF2_RHOS4 Translation initiation factor IF-2 OS=Rhodob... 34 0.58 sp|A3PNL2|IF2_RHOS1 Translation initiation factor IF-2 OS=Rhodob... 34 0.58 sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B... 34 0.58 sp|Q5U236|PERQ2_XENLA PERQ amino acid-rich with GYF domain-conta... 33 0.76 sp|Q55FI4|NOL5_DICDI Nucleolar protein 5 OS=Dictyostelium discoi... 33 0.76 sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6... 33 0.99 sp|Q5RE49|TCHP_PONAB Trichoplein keratin filament-binding protei... 33 1.3 sp|Q9BT92|TCHP_HUMAN Trichoplein keratin filament-binding protei... 33 1.3 sp|A7TIF5|NOP58_VANPO Nucleolar protein NOP58 OS=Vanderwaltozyma... 33 1.3 sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein... 32 1.7 sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella ... 32 1.7 sp|Q0CP15|NST1_ASPTN Stress response protein nst1 OS=Aspergillus... 32 1.7 sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A OS=M... 32 1.7 sp|Q8N4E4|PDCL2_HUMAN Phosducin-like protein 2 OS=Homo sapiens G... 32 2.2 sp|A7TR75|NST1_VANPO Stress response protein NST1 OS=Vanderwalto... 32 2.2 sp|Q4X1D7|CWC25_ASPFU Pre-mRNA-splicing factor cwc25 OS=Aspergil... 32 2.2 sp|P54697|MYOJ_DICDI Myosin IJ heavy chain OS=Dictyostelium disc... 32 2.9 sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containi... 32 2.9 sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomona... 32 2.9 sp|Q54SV8|DPOLA_DICDI DNA polymerase alpha catalytic subunit OS=... 32 2.9 sp|Q9ESU6|BRD4_MOUSE Bromodomain-containing protein 4 OS=Mus mus... 32 2.9 sp|P56095|AP1_KLULA AP-1-like transcription factor OS=Kluyveromy... 32 2.9 sp|P06720|AGAL_ECOLI Alpha-galactosidase OS=Escherichia coli (st... 32 2.9 sp|Q08CX2|SH24A_XENTR SH2 domain-containing protein 4A OS=Xenopu... 31 3.8 sp|A3LYI0|NST1_PICST Stress response protein NST1 OS=Pichia stip... 31 3.8
>sp|Q86DC6|IFD1_CAEEL Intermediate filament protein ifd-1 OS=Caenorhabditis elegans GN=ifd-1 PE=1 SV=2 Length = 575
Score = 37.0 bits (84), Expect = 0.069 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%) Frame = +1
Query: 70 LKEIRD---SKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 +KEIRD S SK ++ EEW +KK+ E K+RSE Q++ Sbjct: 264 MKEIRDQFESDSKKARKTWEEWYKKKITEIKKRSEKFSLTQNQ 306
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Length = 2357
Score = 35.4 bits (80), Expect = 0.20 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +1
Query: 73 KEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 KE RD + K D+E RR+ EE KRR E ++AK++E Sbjct: 811 KEERDRQEKEDKEKETADRRQLQEEQKRREEELRAKREE 849
>sp|Q6BUT3|NST1_DEBHA Stress response protein NST1 OS=Debaryomyces hansenii GN=NST1 PE=3 SV=2 Length = 1179
Score = 35.0 bits (79), Expect = 0.26 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = +1
Query: 67 RLKEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQD 186 R KE K + Q A EE RRKK EE K + E +K KQ+ Sbjct: 675 RQKEKAKEKKRLQQLAKEEERRKKEEEQKAKEEELKQKQE 714
Score = 31.2 bits (69), Expect = 3.8 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +1
Query: 64 ERLKEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 E ++ ++ + K QEAL +R+K EEAK++ E K K+ E Sbjct: 699 EEEQKAKEEELKQKQEALRAEQRRKKEEAKQKREEEKRKRIE 740
Score = 30.8 bits (68), Expect = 4.9 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Frame = +1
Query: 19 KETRSEKKPGAMGLVERLKEIRDSKSKTDQEA---LEEWRRKKLEEAKRRSEAMKAKQDE 189 KE ++K A+ +R K+ ++K K ++E +EE +RK+LE K R EA + K++E Sbjct: 705 KEEELKQKQEALRAEQRRKK-EEAKQKREEEKRKRIEELKRKELEHQK-RLEAQRKKEEE 762
>sp|A5DXA0|NST1_LODEL Stress response protein NST1 OS=Lodderomyces elongisporus GN=NST1 PE=3 SV=1 Length = 1637
Score = 34.7 bits (78), Expect = 0.34 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +1
Query: 73 KEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 KE + + Q A EE +RKK EEAKR +E + AKQ++ Sbjct: 883 KEKAKERKRLQQLAKEEEKRKKEEEAKRIAEELHAKQEQ 921
Score = 30.8 bits (68), Expect = 4.9 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%) Frame = +1
Query: 19 KETRSEKKPGAMGLVERL----KEIRDSKSKTDQEAL---EEWRRKKLEEAKRRSEAMKA 177 +E + +K+ A + E L ++++ + K +EA EE ++KKLEE KRR K Sbjct: 898 EEEKRKKEEEAKRIAEELHAKQEQLKLEQKKKKEEARLRREEEKKKKLEEIKRREAEHKR 957
Query: 178 KQDE 189 K +E Sbjct: 958 KVEE 961
>sp|A5DLJ8|NST1_PICGU Stress response protein NST1 OS=Pichia guilliermondii GN=NST1 PE=3 SV=2 Length = 1107
Score = 34.3 bits (77), Expect = 0.45 Identities = 23/70 (32%), Positives = 33/70 (47%) Frame = +1
Query: 73 KEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDEYSS*QALCRSSCHLDME*SSL 252 KE K + Q A +E RR+K EE + R E ++ KQ+E + Q + E Sbjct: 617 KEKAKEKKRLQQVAKDEERRRKEEEERAREEELRLKQEELRAEQKRRKEEARQKKE-EEK 675
Query: 253 RGAFTEVRLK 282 R E+RLK Sbjct: 676 RKRIEELRLK 685
Score = 32.0 bits (71), Expect = 2.2 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +1
Query: 28 RSEKKPGAMGLVERLK--EIRDSKSKTDQEAL---EEWRRKKLEEAKRRSEAMKAKQDE 189 R E++ A RLK E+R + + +EA EE +RK++EE + + EA K KQ+E Sbjct: 637 RKEEEERAREEELRLKQEELRAEQKRRKEEARQKKEEEKRKRIEELRLKKEAEKKKQEE 695
>sp|Q3IYN5|IF2_RHOS4 Translation initiation factor IF-2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=infB PE=3 SV=1 Length = 836
Score = 33.9 bits (76), Expect = 0.58 Identities = 18/59 (30%), Positives = 35/59 (59%) Frame = +1
Query: 13 GLKETRSEKKPGAMGLVERLKEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 G+ + E++ A+ +L+E+ D+K + D+E R++ EE +RR E ++AK+ E Sbjct: 71 GISDAEMERRLAALRAA-KLREVEDAKRRADEE------RQREEERQRRREELEAKERE 122
>sp|A3PNL2|IF2_RHOS1 Translation initiation factor IF-2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=infB PE=3 SV=1 Length = 836
Score = 33.9 bits (76), Expect = 0.58 Identities = 18/59 (30%), Positives = 35/59 (59%) Frame = +1
Query: 13 GLKETRSEKKPGAMGLVERLKEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 G+ + E++ A+ +L+E+ D+K + D+E R++ EE +RR E ++AK+ E Sbjct: 71 GISDAEMERRLAALRAA-KLREVEDAKRRADEE------RQREEERQRRREELEAKERE 122
>sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1 Length = 1045
Score = 33.9 bits (76), Expect = 0.58 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = +1
Query: 76 EIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQ 183 E+ DS D E +EE ++KK EEAKR+ E +A++ Sbjct: 387 EVMDSWDNDDYETVEEIQKKKEEEAKRKEEEEEAQR 422
>sp|Q5U236|PERQ2_XENLA PERQ amino acid-rich with GYF domain-containing protein 2 OS=Xenopus laevis GN=gigyf2 PE=2 SV=1 Length = 1239
Score = 33.5 bits (75), Expect = 0.76 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +1
Query: 16 LKETRSEKKPGAMGLVERLKEIRDSKS-KTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 ++E ++K L ER+++ + K + ++ EE RRK+LEE KR E + +++E Sbjct: 742 MEEEERQRKKELQLLEERMRQEEERKRLEEERRRQEEERRKQLEERKRAEEERRRREEE 800
>sp|Q55FI4|NOL5_DICDI Nucleolar protein 5 OS=Dictyostelium discoideum GN=nol5 PE=3 SV=1 Length = 638
Score = 33.5 bits (75), Expect = 0.76 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +1
Query: 19 KETRSEKKPGAMGLVERLKEIRDSKSKTDQEALEEWRRKKLEEAKRRSEAMKAKQDE 189 K+ + EKK E KE +D K KT++ + + +K+ +E K E K K+++ Sbjct: 522 KKDKKEKKEEKEDKKEEKKEKKDKKEKTEETPVAKEEKKEKKEKKEEKEEKKDKKEK 578
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6U4P3 |
Definition |
tr|B6U4P3|B6U4P3_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
53 |
Score (bit) |
47.4 |
E-value |
0.0006 |
Report |
|