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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913251
Clone id YMU001_000028_B10
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGATTGTCTCTGAAAGGCCAATGTGGCCTCTGAGACCAAACCAATACATACAATGAAAGA
AACCTATCTACATTCGCCTTTTATACCAAATCAATACATACAATGAAGGAGATCTCTCAT
CTAAGAGAAACAGAGTATGACTTCGTTTCCCTCAACAAATGAATNTAGGGGGTACTTCCT
GGCGAGCATTTCTCGGCGAGCGCTTGTTGGGAATCCTTGCCGAAGCTGGACACACAAATT
TTCAACAATCATGACCCCCCCCAAAATCTATGTCACCTCAGTAACACAAGAATTAAACAG
CCCCTTACAAGACGGCACAATGTACCCACAATCTTCCCATGAGCAAAGAACCTTGCAATC
TGTGTATACAAAAAACTACCTTCCATTCGCGGAGGGCCCCAGCTGGCCCAAACCCGAAAT
TTCGCTGTCCGAGATGGAGCAGGAAGTAGAATCCCACCCTGAAAGATTGACAGGAAAATA
TTTCTGGCTCATCTGGGTAAGCTTCAAGGATGGT
■■Homology search results ■■ -
sp_hit_id Q5NCM1
Definition sp|Q5NCM1|S17A4_MOUSE Putative small intestine sodium-dependent phosphate transport protein OS=Mus musculus
Align length 63
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913251|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B10.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NCM1|S17A4_MOUSE Putative small intestine sodium-dependent ...    32   1.3  
sp|Q8BV57|SRCRL_MOUSE Scavenger receptor cysteine-rich domain-co...    30   5.1  
sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=...    30   5.1  
sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS...    30   5.1  
sp|Q06593|OPT2_YEAST Oligopeptide transporter 2 OS=Saccharomyces...    30   6.7  
sp|Q3AZA4|RPOB_SYNS9 DNA-directed RNA polymerase subunit beta OS...    30   8.7  

>sp|Q5NCM1|S17A4_MOUSE Putative small intestine sodium-dependent
           phosphate transport protein OS=Mus musculus GN=Slc17a4
           PE=2 SV=2
          Length = 492

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 479 IFLSIFQGGILLPAPSRTAKFRVWASWGPPRMEGSFLYTQIARFFAHGKIVGTLCRLVRG 300
           I L + QG  +      T ++ +WA W PP+       +Q+    A G ++GT   L+ G
Sbjct: 162 IVLRVIQG--MAQVMVLTGQYSLWAKWAPPQER-----SQLITIAASGSMLGTFLVLIAG 214

Query: 299 CLI 291
            LI
Sbjct: 215 GLI 217


>sp|Q8BV57|SRCRL_MOUSE Scavenger receptor cysteine-rich
            domain-containing protein LOC284297 homolog OS=Mus
            musculus PE=2 SV=1
          Length = 1371

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +2

Query: 230  THKFSTIMTPPKIYVTSVTQELNSPLQDGTMYPQSSHEQRTLQSVYTKN---YLPFAEGP 400
            TH  ST  TP +   +S   EL+SP +       +  E  +  +  T+N   +L    GP
Sbjct: 1164 THPSSTPATPTESLPSSRKTELSSPTKPRLNSELTFEEAPSTDASQTQNLELFLASESGP 1223

Query: 401  SWPKPEISLSEMEQEVESHPERLT 472
            S P P  +L  +  +    P   T
Sbjct: 1224 SSPSPASNLDPLPTDAFKPPRSQT 1247


>sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens
           GN=RBM27 PE=1 SV=2
          Length = 1060

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 332 SSHEQRTLQSVYTKNYLPFAEGPSWPKPEISLSEMEQ 442
           S    +  +S+YTKNYLP  E P  P+P+  + E E+
Sbjct: 62  SGFVDKLFESLYTKNYLPLLE-PVKPEPKPLVQEKEE 97


>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein
            OS=Rattus norvegicus GN=Nalcn PE=2 SV=1
          Length = 1738

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 224  SWTHKFSTIMTPPKIYVTSVTQELNSPLQDGTMYPQSSHEQRTL 355
            S   + S  + PP I  T  +++ N+  QD    P+SS +Q+ L
Sbjct: 1600 SQQQELSRFLNPPSIETTQPSEDTNANSQDHNTQPESSSQQQLL 1643


>sp|Q06593|OPT2_YEAST Oligopeptide transporter 2 OS=Saccharomyces
           cerevisiae GN=OPT2 PE=1 SV=1
          Length = 877

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 484 EIFSCQSFRVGFYFLLHLGQRNFGFGPAGALREWKV 377
           ++F   +F  G+ FLL L  +  GFG AG LR++ V
Sbjct: 264 KLFYHSAFSFGYQFLLSLSVQFIGFGFAGILRKFVV 299


>sp|Q3AZA4|RPOB_SYNS9 DNA-directed RNA polymerase subunit beta
           OS=Synechococcus sp. (strain CC9902) GN=rpoB PE=3 SV=1
          Length = 1097

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 364 VYKKL-----PSIRGGPQLAQTRNFAVRDGAGSRIPP*KIDRKIFL 486
           +YKKL     PS+ GG QL QTR F  +     R+   KI++K+ L
Sbjct: 229 LYKKLRPGEPPSVSGGQQLLQTRFFDAKRYDLGRVGRYKINKKLRL 274
tr_hit_id A1SI07
Definition tr|A1SI07|A1SI07_NOCSJ Undecaprenyl pyrophosphate synthetase OS=Nocardioides sp. (strain BAA-499 / JS614)
Align length 69
Score (bit) 36.2
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913251|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_B10.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1SI07|A1SI07_NOCSJ Undecaprenyl pyrophosphate synthetase OS=...    36   0.98 
tr|Q5WSN4|Q5WSN4_LEGPL Putative uncharacterized protein OS=Legio...    34   3.7  
tr|B5QYR8|B5QYR8_SALEP Phage protein OS=Salmonella enteritidis P...    33   6.4  
tr|B5FL71|B5FL71_SALDC Putative uncharacterized protein OS=Salmo...    33   6.4  
tr|A6KWY0|A6KWY0_BACV8 Glycoside hydrolase family 29 OS=Bacteroi...    33   8.1  
tr|B6VST2|B6VST2_9BACE Putative uncharacterized protein OS=Bacte...    33   8.1  
tr|B5JV98|B5JV98_9GAMM Alanyl-tRNA synthetase OS=gamma proteobac...    33   8.3  

>tr|A1SI07|A1SI07_NOCSJ Undecaprenyl pyrophosphate synthetase
           OS=Nocardioides sp. (strain BAA-499 / JS614)
           GN=Noca_1932 PE=3 SV=1
          Length = 271

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = +1

Query: 289 RIKQPLTRRHNVPTIFP*AKNLAICVYKKLPSIRGGPQLAQTRNFAVRDGAGSRIPP*KI 468
           ++ + LTRR++V T       L +CV     +  G  +LA T     R+ A  R+ P K+
Sbjct: 129 QVAEELTRRNDVLT-------LTMCV-----NYGGRAELADTARSIAREVAAGRLDPEKV 176

Query: 469 DRKIFLAHL 495
           D K+F  HL
Sbjct: 177 DEKVFARHL 185


>tr|Q5WSN4|Q5WSN4_LEGPL Putative uncharacterized protein
           OS=Legionella pneumophila (strain Lens) GN=lpl2844 PE=4
           SV=1
          Length = 167

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 196 ASACWESLPKLDTQIFNNHDPPQNLCHLSNTRIKQPLTRRHNVPTIFP*AKNLAICVYKK 375
           AS     LPK+ T+ F    PP+N   LSN  IK  +T ++         K L  C+  K
Sbjct: 65  ASISHNILPKIMTETFLGVTPPENWQQLSNDIIKNCITNKNLCKKAA--RKELEECIKPK 122

Query: 376 LP--SIRGGPQLAQ 411
           +P   I+ GP  AQ
Sbjct: 123 IPLILIQFGPWFAQ 136


>tr|B5QYR8|B5QYR8_SALEP Phage protein OS=Salmonella enteritidis PT4
           (strain P125109) GN=SEN1952 PE=4 SV=1
          Length = 324

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 275 TSVTQELNSPLQDGTMYPQSSHEQRTLQSVYTKNYLPFAEGPSWPKPEISLSEMEQEVES 454
           TS  Q       D T++P   + + T Q +  ++  PF      P PE++L++   EV +
Sbjct: 157 TSTGQPNEQACGDPTIFPTGDYTETT-QEITQESKTPFCPVAEQPDPEVTLTDQAIEVLT 215

Query: 455 HPERLTGKYF 484
           H  +++G  +
Sbjct: 216 HLNQVSGSRY 225


>tr|B5FL71|B5FL71_SALDC Putative uncharacterized protein
           OS=Salmonella dublin (strain CT_02021853) GN=SeD_A2284
           PE=4 SV=1
          Length = 324

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 275 TSVTQELNSPLQDGTMYPQSSHEQRTLQSVYTKNYLPFAEGPSWPKPEISLSEMEQEVES 454
           TS  Q       D T++P   + + T Q +  ++  PF      P PE++L++   EV +
Sbjct: 157 TSTGQPNEQACGDPTIFPTGDYTETT-QEITQESKTPFCPVAEQPDPEVTLTDQAIEVLT 215

Query: 455 HPERLTGKYF 484
           H  +++G  +
Sbjct: 216 HLNQVSGSRY 225


>tr|A6KWY0|A6KWY0_BACV8 Glycoside hydrolase family 29 OS=Bacteroides
           vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
           GN=BVU_0217 PE=4 SV=1
          Length = 548

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -3

Query: 446 LPAPSRTAKFRVWASWGPPRMEGS------FLYTQIARFFAH 339
           +P   R AKF +WA WGP  +EGS       LY + +R + H
Sbjct: 52  VPEWFRNAKFGIWAHWGPQCVEGSGDWMARSLYLEGSREYKH 93


>tr|B6VST2|B6VST2_9BACE Putative uncharacterized protein
           OS=Bacteroides dorei DSM 17855 GN=BACDOR_00332 PE=4 SV=1
          Length = 548

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -3

Query: 446 LPAPSRTAKFRVWASWGPPRMEGS------FLYTQIARFFAH 339
           +P   R AKF +WA WGP  +EGS       LY + +R + H
Sbjct: 52  VPEWFRNAKFGIWAHWGPQCVEGSGDWMARSLYLEGSREYKH 93


>tr|B5JV98|B5JV98_9GAMM Alanyl-tRNA synthetase OS=gamma
           proteobacterium HTCC5015 GN=alaS PE=4 SV=1
          Length = 868

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 28/80 (35%), Positives = 37/80 (46%)
 Frame = +2

Query: 155 TNEXRGYFLASISRRALVGNPCRSWTHKFSTIMTPPKIYVTSVTQELNSPLQDGTMYPQS 334
           +NE RGY L  I RRA     CR   H +      P  Y  ++ +EL +  Q G  YP+ 
Sbjct: 294 SNEGRGYVLRRIIRRA-----CR---HGYKLGQNQPFFY--TLVEELVA--QMGEAYPEL 341

Query: 335 SHEQRTLQSVYTKNYLPFAE 394
           S  Q  ++ V  K    FAE
Sbjct: 342 SESQARVEQVLKKEEERFAE 361