BP913264
Clone id YMU001_000028_D02
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGACGAAATTCTCAAGCAGGTTAACAAACTTTTGGAGAAGGGCTTAATAAGGCCTAGTAC
TTCTCCATATTGTTCACCTGTCTTGCTAGTACAGAAAAAGGATGGCACATTCCGCATGTG
CATAGACTATAGATCTCTAAACAAGATCACAATCAAGAATCGATTTCCAATCCCTCGGAT
TGACGACATTCTTGATAAGTTACAAGGAGCCAGTGTCTTTAGTCGTATAGACTTGAAGAG
CGGTTATCATCAAATCCGCATAGCTCCTCAGGATGTGCATAAGACTTCATTTAGAACAAC
CTTCGGGTTGTATGAATTTCTAGTGATGCCTTTTGGACTCACTAATGCACCAGCTACATT
CAACAGAATGATGGATAGAATCTTCCACTCATAGAGAAGCTTTACAGGCGTTTTCTTTGA
TGACGTCTTAATCTTCTCAGAGACTAAAGACGAACACTATAAGCATCTCGCCTTAGTGTT
TGAAGAATTACGCAAACACAAATTATTTGTGAATGCTAAGAAGAGTGAGTTCTTTCTAAA
AGAAATCCACTATTTGGGCCATATAGTATCTCACAACCAGGTGAGAATGGACC
■■Homology search results ■■ -
sp_hit_id Q7LHG5
Definition sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 193
Score (bit) 199.0
E-value 1.0e-50
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913264|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D02.
(593 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 199 1e-50
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 199 1e-50
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 170 6e-42
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 169 1e-41
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 164 4e-40
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 155 1e-37
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 152 1e-36
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 152 1e-36
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 150 4e-36
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 145 2e-34
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 145 2e-34
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 144 3e-34
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 142 1e-33
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 141 3e-33
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 140 4e-33
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot... 134 4e-31
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno... 129 1e-29
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 127 5e-29
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m... 121 3e-27
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf... 120 7e-27
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing... 109 9e-24
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing... 108 2e-23
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 108 2e-23
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 108 3e-23
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi... 107 4e-23
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 79 2e-14
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus... 74 7e-13
sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leuk... 72 2e-12
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 71 4e-12
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 70 8e-12

>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498

Score = 199 bits (505), Expect = 1e-50
Identities = 99/193 (51%), Positives = 132/193 (68%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRID 184
EI K V KLL+ I PS SP SPV+LV KKDGTFR+C+DYR+LNK TI + FP+PRID
Sbjct: 637 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 696

Query: 185 DILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFN 364
++L ++ A +F+ +DL SGYHQI + P+D +KT+F T G YE+ VMPFGL NAP+TF
Sbjct: 697 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 756

Query: 365 RMMDRIFHS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLKE 544
R M F R F V+ DD+LIFSE+ +EH+KHL V E L+ L V KK +F +E
Sbjct: 757 RYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 815

Query: 545 IHYLGHIVSHNQV 583
+LG+ + ++
Sbjct: 816 TEFLGYSIGIQKI 828


>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547

Score = 199 bits (505), Expect = 1e-50
Identities = 99/193 (51%), Positives = 132/193 (68%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRID 184
EI K V KLL+ I PS SP SPV+LV KKDGTFR+C+DYR+LNK TI + FP+PRID
Sbjct: 611 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 670

Query: 185 DILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFN 364
++L ++ A +F+ +DL SGYHQI + P+D +KT+F T G YE+ VMPFGL NAP+TF
Sbjct: 671 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 730

Query: 365 RMMDRIFHS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLKE 544
R M F R F V+ DD+LIFSE+ +EH+KHL V E L+ L V KK +F +E
Sbjct: 731 RYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 789

Query: 545 IHYLGHIVSHNQV 583
+LG+ + ++
Sbjct: 790 TEFLGYSIGIQKI 802


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058

Score = 170 bits (430), Expect = 6e-42
Identities = 89/200 (44%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGT-----FRMCIDYRSLNKITIKNRFP 169
E+ Q+ +L +G+IR S SPY SP+ +V KK FR+ IDYR LN+IT+ +R P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281

Query: 170 IPRIDDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNA 349
IP +D+IL KL + F+ IDL G+HQI + P+ V KT+F T G YE+L MPFGL NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341

Query: 350 PATFNRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKS 526
PATF R M+ I V+ DD+++FS + DEH + L LVFE+L K L + K
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401

Query: 527 EFFLKEIHYLGHIVSHNQVR 586
EF +E +LGH+++ + ++
Sbjct: 402 EFLKQETTFLGHVLTPDGIK 421


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003

Score = 169 bits (427), Expect = 1e-41
Identities = 89/205 (43%), Positives = 130/205 (63%), Gaps = 9/205 (4%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKK-----DGTFRMCIDYRSLNKITIKNRFP 169
E+ +Q+++LL+ G+IRPS SPY SP+ +V KK + +RM +D++ LN +TI + +P
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 170 IPRIDDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNA 349
IP I+ L L A F+ +DL SG+HQI + D+ KT+F T G YEFL +PFGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 350 PATFNRMMDRIFHS*RSFTG----VFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNA 517
PA F RM+D I R G V+ DD+++FSE D H+K+L LV L K L VN
Sbjct: 258 PAIFQRMIDDIL---REHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNL 314

Query: 518 KKSEFFLKEIHYLGHIVSHNQVRMD 592
+KS F ++ +LG+IV+ + ++ D
Sbjct: 315 EKSHFLDTQVEFLGYIVTADGIKAD 339


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059

Score = 164 bits (414), Expect = 4e-40
Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 6/200 (3%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGT-----FRMCIDYRSLNKITIKNRFP 169
E+ QV ++L +GLIR S SPY SP +V KK +R+ IDYR LN+ITI +R+P
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 170 IPRIDDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNA 349
IP +D+IL KL F+ IDL G+HQI + + + KT+F T G YE+L MPFGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 350 PATFNRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKS 526
PATF R M+ I V+ DD++IFS + EH + LVF +L L + K
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 527 EFFLKEIHYLGHIVSHNQVR 586
EF KE ++LGHIV+ + ++
Sbjct: 401 EFLKKEANFLGHIVTPDGIK 420


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 155 bits (393), Expect = 1e-37
Identities = 73/186 (39%), Positives = 121/186 (65%), Gaps = 1/186 (0%)
Frame = +2

Query: 17 QVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILD 196
++N+ L+ G+IR S + PV+ V KK+GT RM +DY+ LNK N +P+P I+ +L
Sbjct: 431 EINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLA 490

Query: 197 KLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFNRMMD 376
K+QG+++F+++DLKS YH IR+ D HK +FR G++E+LVMP+G++ APA F ++
Sbjct: 491 KIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550

Query: 377 RIF-HS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLKEIHY 553
I + S + DD+LI S+++ EH KH+ V ++L+ L +N K EF ++ +
Sbjct: 551 TILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

Query: 554 LGHIVS 571
+G+ +S
Sbjct: 611 IGYHIS 616


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 152 bits (384), Expect = 1e-36
Identities = 72/186 (38%), Positives = 121/186 (65%), Gaps = 1/186 (0%)
Frame = +2

Query: 17 QVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILD 196
++N+ L+ G+IR S + PV+ V KK+GT RM +DY+ LNK N +P+P I+ +L
Sbjct: 431 EINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLA 490

Query: 197 KLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFNRMMD 376
K+QG+++F+++DLKS YH IR+ D HK +FR G++E+LVMP+G++ APA F ++
Sbjct: 491 KIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550

Query: 377 RIFHS*R-SFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLKEIHY 553
I + S + D++LI S+++ EH KH+ V ++L+ L +N K EF ++ +
Sbjct: 551 TILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

Query: 554 LGHIVS 571
+G+ +S
Sbjct: 611 IGYHIS 616


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 152 bits (384), Expect = 1e-36
Identities = 72/186 (38%), Positives = 121/186 (65%), Gaps = 1/186 (0%)
Frame = +2

Query: 17 QVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILD 196
++N+ L+ G+IR S + PV+ V KK+GT RM +DY+ LNK N +P+P I+ +L
Sbjct: 431 EINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLA 490

Query: 197 KLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFNRMMD 376
K+QG+++F+++DLKS YH IR+ D HK +FR G++E+LVMP+G++ APA F ++
Sbjct: 491 KIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550

Query: 377 RIFHS*R-SFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLKEIHY 553
I + S + D++LI S+++ EH KH+ V ++L+ L +N K EF ++ +
Sbjct: 551 TILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

Query: 554 LGHIVS 571
+G+ +S
Sbjct: 611 IGYHIS 616


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1035

Score = 150 bits (380), Expect = 4e-36
Identities = 85/204 (41%), Positives = 120/204 (58%), Gaps = 7/204 (3%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKK------DGTFRMCIDYRSLNKITIKNR 163
D + +V +LL+ G+IRPS SPY SP +V KK + R+ ID+R LN+ TI +R
Sbjct: 195 DFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDR 254

Query: 164 FPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLT 343
+P+P I IL L A F+ +DLKSGYHQI +A D KTSF G YEF +PFGL
Sbjct: 255 YPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLR 314

Query: 344 NAPATFNRMMDRIF-HS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAK 520
NA + F R +D + V+ DDV+IFSE + +H +H+ V + L + V+ +
Sbjct: 315 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQE 374

Query: 521 KSEFFLKEIHYLGHIVSHNQVRMD 592
K+ FF + + YLG IVS + + D
Sbjct: 375 KTRFFKESVEYLGFIVSKDGTKSD 398


>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain BBC) GN=ORF V PE=3 SV=1
Length = 679

Score = 145 bits (365), Expect = 2e-34
Identities = 69/190 (36%), Positives = 120/190 (63%), Gaps = 4/190 (2%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLV----QKKDGTFRMCIDYRSLNKITIKNRFP 169
+E KQ+ +LL+ +I+PS SP+ +P LV +K+ G RM ++Y+++NK TI + +
Sbjct: 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYN 319

Query: 170 IPRIDDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNA 349
+P D++L ++G +FS D KSG+ Q+ + + T+F G YE+ V+PFGL A
Sbjct: 320 LPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 379

Query: 350 PATFNRMMDRIFHS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSE 529
P+ F R MD F R F V+ DD+L+FS +++H H+A++ ++ +H + ++ KK++
Sbjct: 380 PSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 439

Query: 530 FFLKEIHYLG 559
F K+I++LG
Sbjct: 440 LFKKKINFLG 449


tr_hit_id Q2R4W7
Definition tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica
Align length 198
Score (bit) 242.0
E-value 1.0e-62
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913264|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D02.
(593 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 242 1e-62
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 241 2e-62
tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon pro... 241 3e-62
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs... 241 3e-62
tr|Q2QTW2|Q2QTW2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 240 4e-62
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1 239 9e-62
tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 239 9e-62
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s... 239 1e-61
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 239 1e-61
tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse tran... 238 2e-61
tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1 238 2e-61
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s... 238 3e-61
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 238 3e-61
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy... 238 3e-61
tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa s... 237 3e-61
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 237 3e-61
tr|Q2QSS9|Q2QSS9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 237 3e-61
tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse tran... 237 3e-61
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 237 3e-61
tr|Q7XZG5|Q7XZG5_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 237 4e-61
tr|Q75HH6|Q75HH6_ORYSJ Putative polyprotein (Retrotransposon pro... 237 4e-61
tr|Q01LS6|Q01LS6_ORYSA OSIGBa0161P06.6 protein OS=Oryza sativa G... 236 6e-61
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s... 236 7e-61
tr|Q7XL40|Q7XL40_ORYSJ OSJNBa0056L23.17 protein OS=Oryza sativa ... 236 1e-60
tr|Q53J72|Q53J72_ORYSJ Retrotransposon protein, putative, Ty3-gy... 236 1e-60
tr|Q33AK6|Q33AK6_ORYSJ Retrotransposon protein, putative, Ty3-gy... 236 1e-60
tr|Q2QTG5|Q2QTG5_ORYSJ Retrotransposon protein, putative, Ty3-gy... 236 1e-60
tr|Q25AF3|Q25AF3_ORYSA H0512B01.1 protein OS=Oryza sativa GN=H05... 236 1e-60
tr|Q01LV8|Q01LV8_ORYSA OSIGBa0139I12.6 protein OS=Oryza sativa G... 236 1e-60
tr|Q01KH2|Q01KH2_ORYSA H0409D10.7 protein OS=Oryza sativa GN=H04... 236 1e-60

>tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g27050 PE=4 SV=1
Length = 1469

Score = 242 bits (617), Expect = 1e-62
Identities = 111/198 (56%), Positives = 156/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 556 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSIRMCVDYRSLNEVTIKNKYPLPRI 615

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I +D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 616 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTRDIPKTAFSTRYGLYEFTVMSFGLTNAPAYF 675

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV E+LRKHKL+ K EF+L
Sbjct: 676 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLQLVLEKLRKHKLYAKFSKCEFWL 735

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 736 KEVAFLGHVISAGGVAVD 753


>tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g28690 PE=4 SV=1
Length = 1470

Score = 241 bits (615), Expect = 2e-62
Identities = 110/198 (55%), Positives = 156/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 556 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRI 615

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I +D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 616 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYF 675

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV ++LRKHKL+ K EF+L
Sbjct: 676 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWL 735

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 736 KEVAFLGHVISAGGVAVD 753


>tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon protein,
putative, Ty3-gypsy subclass) OS=Oryza sativa subsp.
japonica GN=OSJNBa0034B05.13 PE=4 SV=1
Length = 1569

Score = 241 bits (614), Expect = 3e-62
Identities = 112/198 (56%), Positives = 154/198 (77%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+P I
Sbjct: 655 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPWI 714

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 715 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVMSFGLTNAPAYF 774

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ +DEH +HL LV E+LRKHKL+ K EF+L
Sbjct: 775 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEDEHAEHLRLVLEKLRKHKLYAKFSKCEFWL 834

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V MD
Sbjct: 835 KEVAFLGHVISAGGVAMD 852


>tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subsp.
japonica GN=Os07g0444200 PE=4 SV=1
Length = 1316

Score = 241 bits (614), Expect = 3e-62
Identities = 111/198 (56%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 405 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRI 464

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 465 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVMSFGLTNAPAYF 524

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV E+LRKHKL+ K EF+L
Sbjct: 525 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWL 584

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 585 KEVAFLGHVISAGGVAVD 602


>tr|Q2QTW2|Q2QTW2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g18320 PE=4 SV=1
Length = 1226

Score = 240 bits (613), Expect = 4e-62
Identities = 111/198 (56%), Positives = 154/198 (77%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG RMC+DYRSLN++TIKN++P+PRI
Sbjct: 405 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGCIRMCVDYRSLNEVTIKNKYPLPRI 464

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 465 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTTFSTRYGLYEFTVMSFGLTNAPAYF 524

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV E+LRKHKL+ K EF+L
Sbjct: 525 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLVLEKLRKHKLYAKFSKCEFWL 584

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 585 KEVAFLGHVISAGGVAVD 602


>tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
Length = 1484

Score = 239 bits (610), Expect = 9e-62
Identities = 109/198 (55%), Positives = 156/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L +KG IRPS+SP+ +PV+ V KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 574 EELKKQIKELQDKGFIRPSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRI 633

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I D+ KT+F T +GLYE+ VM FGLTNAPA F
Sbjct: 634 DDLFDQLRGACVFSKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAPAYF 693

Query: 362 NRMMDRIF-HS*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
MM+++F F VF DD+L+FS+TK+EH +HL LV ++LR+HKL+ K EF+L
Sbjct: 694 MYMMNKVFMEYLDKFVVVFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSKCEFWL 753

Query: 539 KEIHYLGHIVSHNQVRMD 592
+E+ +LGH+VS+ + +D
Sbjct: 754 EEVSFLGHVVSNGGIAVD 771


>tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g19910 PE=4 SV=1
Length = 1436

Score = 239 bits (610), Expect = 9e-62
Identities = 111/198 (56%), Positives = 154/198 (77%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 556 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRI 615

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I DV KT+F T +GLYEF VM FGLTN PA F
Sbjct: 616 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDVPKTAFSTRYGLYEFTVMSFGLTNTPAYF 675

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV E+LRKHKL+ K EF+L
Sbjct: 676 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLVLEKLRKHKLYAKFSKCEFWL 735

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 736 KEVAFLGHVISAGGVVVD 753


>tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0049I21.5 PE=4 SV=2
Length = 1644

Score = 239 bits (609), Expect = 1e-61
Identities = 110/198 (55%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKDG+ RMC+DYRSLN++TIKN++P+PRI
Sbjct: 646 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRI 705

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I D+ KT+F T +GLY+F VM FGLTNAPA F
Sbjct: 706 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYGLYKFTVMSFGLTNAPAYF 765

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV E+LRKHKL+ K EF+L
Sbjct: 766 MNLMNKVFMDYLDKFMVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWL 825

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 826 KEVAFLGHVISAGGVAVD 843


>tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g28930 PE=4 SV=1
Length = 1470

Score = 239 bits (609), Expect = 1e-61
Identities = 109/198 (55%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Frame = +2

Query: 2 DEILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRI 181
+E+ KQ+ +L EKG +RPS+SP+ +PVL V+KKD + RMC+DYRSLN++TIKN++P+PRI
Sbjct: 556 EELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDSSMRMCVDYRSLNEVTIKNKYPLPRI 615

Query: 182 DDILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATF 361
DD+ D+L+GA VFS+IDL+SGYHQ++I +D+ KT+F T +GLYEF VM FGLTNAPA F
Sbjct: 616 DDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYF 675

Query: 362 NRMMDRIFHS-*RSFTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFL 538
+M+++F F VF DD+LI+S+ ++EH +HL LV ++LRKHKL+ K EF+L
Sbjct: 676 MNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWL 735

Query: 539 KEIHYLGHIVSHNQVRMD 592
KE+ +LGH++S V +D
Sbjct: 736 KEVAFLGHVISAGGVAVD 753


>tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse
transcriptase); Zinc finger, CCHC-type; Peptidase
aspartic, active site; Retrotransposon gag protein
OS=Medicago truncatula GN=MtrDRAFT_AC147774g4v1 PE=4 SV=1
Length = 912

Score = 238 bits (607), Expect = 2e-61
Identities = 109/197 (55%), Positives = 154/197 (78%), Gaps = 1/197 (0%)
Frame = +2

Query: 5 EILKQVNKLLEKGLIRPSTSPYCSPVLLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRID 184
E+ KQ+ LLEK +RPS SP+ +PVLLV+KKDG+ R+CIDYR LNK+TIKNR+P+PRID
Sbjct: 529 ELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRID 588

Query: 185 DILDKLQGASVFSRIDLKSGYHQIRIAPQDVHKTSFRTTFGLYEFLVMPFGLTNAPATFN 364
D++D+L GA VFS+IDL+SGYHQI++ +D+ KT+FRT +G YE+ VMPFG+TNAP F
Sbjct: 589 DLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTAFRTCYGHYEYKVMPFGVTNAPGVFM 648

Query: 365 RMMDRIFHS*RS-FTGVFFDDVLIFSETKDEHYKHLALVFEELRKHKLFVNAKKSEFFLK 541
M+RIFH+ F VF DD+LI+S+T++EH +HL +V + L++ KL+ K EF+LK
Sbjct: 649 EYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLK 708

Query: 542 EIHYLGHIVSHNQVRMD 592
E+ +LGH++S + + +D
Sbjct: 709 EVSFLGHVISGDGIAVD 725