NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913273
Clone id YMU001_000028_D11
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTTTAGAATAGGAGAGGGTGTTGCATTGTGTCAAAATTGGTGTATTGAGACATTGCGG
TGAAGGTCTGCAAGCCTATCTCTACTTCTATGGAGATGGGGGTGAAGCTCAGTCTCCTTG
ACGTTGGAAACTTTTTCTGTGCCACTGTGTATTGGGAGGCTGTTGGTGGTGCCTTGTTTA
AGGCTAGACATTCAATTTGTAGTCTGGCATATAACCGGATTTATGCATAGTCGAGGGATT
AAGCTTGCAGTCTCACCTTGAGGAGATGTTTATGTAGCACGTCGACTTAGCATAGGTATG
CAGTTAAGCATATGTTTCGCTATCCATGAGTTGTTTTTGCTTCATGCTTGGCAGCTCATG
CATTTAGTGGTTTAGCAAGAAGTAGCCTATTGGGGTCACAGTATGGGGCAGCTTTCACAC
TGGTGCCTGATTGTGTTTATCTCAAAGGCCTTGTTTTTGTTTCACTGACAGTTTGAGCGC
ATTGGAAACTGCAAGCAACACAGTGTTCCATGCTAGCACCAAGCACATTAAAATGCATTA
TCATTATGT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 39
Score (bit) 38.9
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913273|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D11.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    39   0.017
sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes ...    30   7.8  
sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=...    30   7.8  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +2

Query: 431  LCLSQRPCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
            L L Q+    + DS SA++ + N+++HA TKHI + YH+
Sbjct: 1244 LGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1282


>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes
           GN=PCDHGB1 PE=3 SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 204 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 115
           D+K+   P    HQ PPNT W     QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820


>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens
           GN=PCDHGB1 PE=2 SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 204 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 115
           D+K+   P    HQ PPNT W     QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820
tr_hit_id A5AKW8
Definition tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 94
Score (bit) 46.6
E-value 0.0009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913273|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D11.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    47   9e-04
tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q9C739|Q9C739_ARATH Copia-type polyprotein, putative OS=Arabi...    44   0.004
tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis...    44   0.006
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...    44   0.007
tr|Q9SFE1|Q9SFE1_ARATH T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1     44   0.007
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...    44   0.007
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...    44   0.007
tr|Q2QP29|Q2QP29_ORYSJ Retrotransposon protein, putative, unclas...    39   0.012
tr|Q2QQK0|Q2QQK0_ORYSJ Retrotransposon protein, putative, unclas...    39   0.012
tr|A5C4L4|A5C4L4_VITVI Putative uncharacterized protein OS=Vitis...    43   0.012
tr|Q75K98|Q75K98_ORYSJ Putative gag-pol polyprotein (Retrotransp...    38   0.020
tr|A5BM89|A5BM89_VITVI Putative uncharacterized protein OS=Vitis...    42   0.021
tr|A5B8U3|A5B8U3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.021
tr|Q10GK7|Q10GK7_ORYSJ Retrotransposon protein, putative, unclas...    38   0.025
tr|Q75LG0|Q75LG0_ORYSJ Putative integrase OS=Oryza sativa subsp....    38   0.025
tr|A5BHI3|A5BHI3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.036
tr|A5BNY7|A5BNY7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.047
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.062
tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical O...    40   0.080
tr|A5AJH0|A5AJH0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.080
tr|A5BNR5|A5BNR5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.10 
tr|A5BDE6|A5BDE6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.10 
tr|A5B8V7|A5B8V7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.10 
tr|Q8S7X8|Q8S7X8_ORYSA Putative retroelement OS=Oryza sativa GN=...    35   0.12 
tr|Q7XHA7|Q7XHA7_ORYSJ Retrotransposon protein, putative, Ty1-co...    35   0.12 
tr|Q9LPK1|Q9LPK1_ARATH F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2       39   0.14 
tr|Q9FH39|Q9FH39_ARATH Copia-type polyprotein (Polyprotein) OS=A...    39   0.14 
tr|Q9C7Y1|Q9C7Y1_ARATH Copia-type polyprotein, putative; 28768-3...    39   0.14 
tr|A5C001|A5C001_VITVI Putative uncharacterized protein OS=Vitis...    39   0.14 

>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 46.6 bits (109), Expect = 9e-04
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 448
            S + + FMLGS  I W SK+ P + ++   + +  A +   +                  
Sbjct: 1154 STTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYA 1213

Query: 449  -PCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
             P +C  D+ SA+  A N VFHA TKH+++HYH+
Sbjct: 1214 VPLYC--DNQSAVRLAENPVFHARTKHVEVHYHF 1245


>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 448
            S + + FMLGS  I W SK+ P + +    + +  A +   +                  
Sbjct: 827  STTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLMNDLHQLVDYA 886

Query: 449  -PCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
             P +C  D+ SA+  A N VFHA TKH+++HYH+
Sbjct: 887  VPLYC--DNQSAVRLAENPVFHARTKHVEVHYHF 918


>tr|Q9C739|Q9C739_ARATH Copia-type polyprotein, putative
            OS=Arabidopsis thaliana GN=F11I4_21 PE=4 SV=1
          Length = 1352

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*PIGV-TVWGSFHTGA*LCL----------------SQRP 451
            S S F F +G +   W SKK PI V +   + +  A  C+                 + P
Sbjct: 1207 STSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1266

Query: 452  CFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
               F D+ SA+  A N VFH  +KHI   YHY
Sbjct: 1267 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1298


>tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003097 PE=4 SV=1
          Length = 1052

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 448
            S + + FMLGS  I W SK+ P + ++   + +  A +   +                  
Sbjct: 906  STTGYVFMLGSRAISWCSKRQPTVSLSTTEAEYRAAAMATQESTWLIXLMNDLHQLVDYA 965

Query: 449  -PCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
             P +C  D+  A+  A N VFHA TKH+++HYH+
Sbjct: 966  VPLYC--DNQLAVHLAENPVFHARTKHVEVHYHF 997


>tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana
            GN=T28P6.8 PE=4 SV=1
          Length = 1352

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*PI-GVTVWGSFHTGA*LCL----------------SQRP 451
            S S F F +G +   W SKK PI  ++   + +  A  C+                 + P
Sbjct: 1207 STSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1266

Query: 452  CFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
               F D+ SA+  A N VFH  +KHI   YHY
Sbjct: 1267 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1298


>tr|Q9SFE1|Q9SFE1_ARATH T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1291

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*PI-GVTVWGSFHTGA*LCL----------------SQRP 451
            S S F F +G +   W SKK PI  ++   + +  A  C+                 + P
Sbjct: 1146 STSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1205

Query: 452  CFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
               F D+ SA+  A N VFH  +KHI   YHY
Sbjct: 1206 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1237


>tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis thaliana
            GN=T20K12.230 PE=4 SV=1
          Length = 1352

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*PI-GVTVWGSFHTGA*LCL----------------SQRP 451
            S S F F +G +   W SKK PI  ++   + +  A  C+                 + P
Sbjct: 1207 STSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1266

Query: 452  CFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
               F D+ SA+  A N VFH  +KHI   YHY
Sbjct: 1267 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1298


>tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative
            OS=Arabidopsis thaliana GN=T18I24.5 PE=4 SV=1
          Length = 1320

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*PI-GVTVWGSFHTGA*LCL----------------SQRP 451
            S S F F +G +   W SKK PI  ++   + +  A  C+                 + P
Sbjct: 1175 STSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1234

Query: 452  CFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
               F D+ SA+  A N VFH  +KHI   YHY
Sbjct: 1235 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1266


>tr|Q2QP29|Q2QP29_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g35880 PE=4 SV=1
          Length = 1417

 Score = 38.5 bits (88), Expect(2) = 0.012
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
 Frame = +2

Query: 323  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 448
            S S  C  LG+S I W S+K   +G +   S +  A  C SQ                  
Sbjct: 1277 STSGTCHFLGTSLIGWSSRKQSSVGQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKV 1336

Query: 449  PCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
            P FC  D+ SA+  A N V ++ TKHI + +H+
Sbjct: 1337 PLFC--DNTSAINIAKNPVQYSRTKHIDIRFHF 1367



 Score = 23.1 bits (48), Expect(2) = 0.012
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
 Frame = +3

Query: 69   CKPISTSMEMGVKLSLLDVGNFFCATVYWEAVGGALFKARHSICSLAYNRIYA*SRD*AC 248
            CKPIST +     L   + G       Y   +G  L+                 SR    
Sbjct: 1169 CKPISTPIGSTAVLDPDEDGEVVDQKEYRSMIGSLLYLTA--------------SRP--- 1211

Query: 249  SLTLRRCLC-----STST*HRYAVKHMFRY 323
             +    CLC     S  T HR AVK + RY
Sbjct: 1212 DIQFAVCLCARFQASPRTSHRQAVKRIMRY 1241


>tr|Q2QQK0|Q2QQK0_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g30770 PE=4 SV=2
          Length = 776

 Score = 38.5 bits (88), Expect(2) = 0.012
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
 Frame = +2

Query: 323 SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 448
           S S  C  LG+S I W S+K   +  +   S +  A  C SQ                  
Sbjct: 636 STSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKV 695

Query: 449 PCFCFTDSLSALETASNTVFHASTKHIKMHYHY 547
           P FC  D+ SA+  A N V H+ TKHI + +H+
Sbjct: 696 PLFC--DNTSAINIAKNPVQHSRTKHIDIRFHF 726



 Score = 23.1 bits (48), Expect(2) = 0.012
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
 Frame = +3

Query: 267 CLC-----STST*HRYAVKHMFRY 323
           CLC     ST   HR AVK + RY
Sbjct: 577 CLCARFQASTRASHRQAVKRIMRY 600