BP913274
Clone id YMU001_000028_D12
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATGAATGTTAAGCGAGCAAGGGGCCTGACAAGGTTGAGTAGTAGGGATAGGAGCAACAG
TCCCAATAATGGTTTGGAAGTCCACTCTCGTAGTAGCCATTTTTCTTGAGGTGTAAGCTC
TTCATGAATGGCTCTTGTATTTGATTTTGGTTACCGTGGTGTTGTGGAGTGCTGCCGATG
GAGATTTTTTCATCAAGTGCTTTGCAGCTTTGTAAATACTGGCTGCATGTAAATTTTCAC
CAAAGACTTCTGTATATATAGATGAAGAGCCAGGAGCTACTCAACATCTAGGCTAAGTCT
AAATCTTGGATGCTTTGTTCAAAGATTGTGGACAAGTAGGTGAAGCTTCGGTTCTCGGAC
AGCATAATGGGACCTTGGGGAAGGTTCTCGTTGTATCTATAGCAAGTTTATTAGTATGCA
TCTAGAAAAGACAGGTAAGATGATACTGCCTTAATCAGGTACTCATCCAAAATTGAGATT
TGCCTTAGCTTTTATTTATTGTGGTTCTAATTAGTTCCCCGAGGTGAGGA
■■Homology search results ■■ -
sp_hit_id O77645
Definition sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis familiaris
Align length 67
Score (bit) 30.4
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913274|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D12.
(530 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis famil... 30 5.5
sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast... 30 5.5
sp|Q9XXV8|MYOK_DICDI Myosin-K heavy chain OS=Dictyostelium disco... 30 7.2
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast... 30 9.4

>sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis
familiaris GN=TNP2 PE=2 SV=1
Length = 129

Score = 30.4 bits (67), Expect = 5.5
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -1

Query: 230 TCSQYLQSC-KALDEKISIGSTPQHH----GNQNQIQEPFMKSLHLKKNGYYESGLPNHY 66
TCS + Q+C ++ + S +P H G+Q+Q P + H K + P
Sbjct: 30 TCSSHCQTCSQSCSQSRSSSQSPTGHHSSSGHQSQSPHPTLPPRHQKHTRHSHHCPPRPT 89

Query: 65 WDCCSYP 45
CSYP
Sbjct: 90 THSCSYP 96


>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
Length = 448

Score = 30.4 bits (67), Expect = 5.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3

Query: 186 NLHRQHSTTPR*PKSNTRAIHEELTPQEKW 97
N+H H +PR P N RA HE + QE W
Sbjct: 365 NVHIPHHISPRIPSYNLRAAHESI--QENW 392


>sp|Q9XXV8|MYOK_DICDI Myosin-K heavy chain OS=Dictyostelium
discoideum GN=myoK PE=2 SV=1
Length = 858

Score = 30.0 bits (66), Expect = 7.2
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = -1

Query: 476 SILDEYLIKAVSSYLSF-LDAY**TCYRYNENLPQGPIMLSENRSFTYLSTIFEQSIQD 303
S DE+ IK + +S+ ++ + C++ N+NL + +N ++ ++ ++F ++IQD
Sbjct: 629 SSADEFTIKHYAGEVSYSIEEF---CFKNNDNLYASIVGCLQNSTYQFIVSLFPENIQD 684


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
OS=Glycine max PE=2 SV=1
Length = 424

Score = 29.6 bits (65), Expect = 9.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3

Query: 186 NLHRQHSTTPR*PKSNTRAIHEELTPQEKW 97
N+H H +PR P N RA H+ L QE W
Sbjct: 359 NVHIPHHISPRIPSYNLRAAHKSL--QENW 386


tr_hit_id B5WWZ8
Definition tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1 OS=Lotus japonicus
Align length 62
Score (bit) 37.4
E-value 0.48
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913274|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D12.
(530 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1 OS=... 37 0.48
tr|A7NXF0|A7NXF0_VITVI Chromosome chr5 scaffold_2, whole genome ... 36 1.1
tr|Q0E1H7|Q0E1H7_ORYSJ Os02g0442200 protein OS=Oryza sativa subs... 36 1.4
tr|A5AH38|A5AH38_VITVI Putative uncharacterized protein OS=Vitis... 36 1.4
tr|B3RKC6|B3RKC6_TRIAD Predicted protein OS=Trichoplax adhaerens... 35 3.1

>tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1
OS=Lotus japonicus GN=fao1 PE=2 SV=1
Length = 749

Score = 37.4 bits (85), Expect = 0.48
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
F+ S+YL + + + E+I + + H G QNQ+ ++L LK + + NH+ C
Sbjct: 340 FSTSEYLSAMETVCERIGVTESCTHEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHFCGSC 399

Query: 53 SY 48
Y
Sbjct: 400 GY 401


>tr|A7NXF0|A7NXF0_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020305001
PE=4 SV=1
Length = 741

Score = 36.2 bits (82), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
F SQY + A+ E+I + T G QNQ+ + ++L LK + + HY C
Sbjct: 335 FGSSQYFSAMDAVCERIGVTETCVEEGFQNQVLQKGCENLGLKVDLVPRNSSEKHYCGSC 394

Query: 53 SY 48
SY
Sbjct: 395 SY 396


>tr|Q0E1H7|Q0E1H7_ORYSJ Os02g0442200 protein OS=Oryza sativa subsp.
japonica GN=Os02g0442200 PE=4 SV=1
Length = 683

Score = 35.8 bits (81), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1

Query: 167 PQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCCSYPYYSTLSGP 21
P GNQ I+ P ++ N + G HY + CSYP+++ L GP
Sbjct: 162 PPVGGNQQAIRPP------VRSNNCFNCGQAGHYINQCSYPHHAQLQGP 204


>tr|A5AH38|A5AH38_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_019349 PE=4 SV=1
Length = 741

Score = 35.8 bits (81), Expect = 1.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
F SQY + A+ E+I + T G QNQ+ ++L LK + + HY C
Sbjct: 335 FGSSQYFSAMDAVCERIGVTETCAEEGFQNQVLRKGCENLGLKVDLVPRNSSEKHYCGSC 394

Query: 53 SY 48
SY
Sbjct: 395 SY 396


>tr|B3RKC6|B3RKC6_TRIAD Predicted protein OS=Trichoplax adhaerens
GN=TRIADDRAFT_52796 PE=4 SV=1
Length = 452

Score = 34.7 bits (78), Expect = 3.1
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2

Query: 250 EVFGENLHAASIYKAAKHLMKKSPSAALHNTTVTKIKYKSHS*RAYTSRKMATTRVDFQT 71
+ F + AS+ A + + ++++ TT T I S A TS +ATT QT
Sbjct: 43 DYFESSFSGASVASTATSSVVSTATSSVAGTTATSI-----SSAASTSATLATTGASSQT 97

Query: 70 IIGTVAPIPTTQPC-QAPC 17
+ P PTT PC + PC
Sbjct: 98 ---PITPTPTTNPCLRNPC 113