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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913274
Clone id YMU001_000028_D12
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGAATGTTAAGCGAGCAAGGGGCCTGACAAGGTTGAGTAGTAGGGATAGGAGCAACAG
TCCCAATAATGGTTTGGAAGTCCACTCTCGTAGTAGCCATTTTTCTTGAGGTGTAAGCTC
TTCATGAATGGCTCTTGTATTTGATTTTGGTTACCGTGGTGTTGTGGAGTGCTGCCGATG
GAGATTTTTTCATCAAGTGCTTTGCAGCTTTGTAAATACTGGCTGCATGTAAATTTTCAC
CAAAGACTTCTGTATATATAGATGAAGAGCCAGGAGCTACTCAACATCTAGGCTAAGTCT
AAATCTTGGATGCTTTGTTCAAAGATTGTGGACAAGTAGGTGAAGCTTCGGTTCTCGGAC
AGCATAATGGGACCTTGGGGAAGGTTCTCGTTGTATCTATAGCAAGTTTATTAGTATGCA
TCTAGAAAAGACAGGTAAGATGATACTGCCTTAATCAGGTACTCATCCAAAATTGAGATT
TGCCTTAGCTTTTATTTATTGTGGTTCTAATTAGTTCCCCGAGGTGAGGA
■■Homology search results ■■ -
sp_hit_id O77645
Definition sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis familiaris
Align length 67
Score (bit) 30.4
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913274|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D12.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis famil...    30   5.5  
sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast...    30   5.5  
sp|Q9XXV8|MYOK_DICDI Myosin-K heavy chain OS=Dictyostelium disco...    30   7.2  
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast...    30   9.4  

>sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis
           familiaris GN=TNP2 PE=2 SV=1
          Length = 129

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = -1

Query: 230 TCSQYLQSC-KALDEKISIGSTPQHH----GNQNQIQEPFMKSLHLKKNGYYESGLPNHY 66
           TCS + Q+C ++  +  S   +P  H    G+Q+Q   P +   H K   +     P   
Sbjct: 30  TCSSHCQTCSQSCSQSRSSSQSPTGHHSSSGHQSQSPHPTLPPRHQKHTRHSHHCPPRPT 89

Query: 65  WDCCSYP 45
              CSYP
Sbjct: 90  THSCSYP 96


>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
           OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
          Length = 448

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 186 NLHRQHSTTPR*PKSNTRAIHEELTPQEKW 97
           N+H  H  +PR P  N RA HE +  QE W
Sbjct: 365 NVHIPHHISPRIPSYNLRAAHESI--QENW 392


>sp|Q9XXV8|MYOK_DICDI Myosin-K heavy chain OS=Dictyostelium
           discoideum GN=myoK PE=2 SV=1
          Length = 858

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -1

Query: 476 SILDEYLIKAVSSYLSF-LDAY**TCYRYNENLPQGPIMLSENRSFTYLSTIFEQSIQD 303
           S  DE+ IK  +  +S+ ++ +   C++ N+NL    +   +N ++ ++ ++F ++IQD
Sbjct: 629 SSADEFTIKHYAGEVSYSIEEF---CFKNNDNLYASIVGCLQNSTYQFIVSLFPENIQD 684


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
           OS=Glycine max PE=2 SV=1
          Length = 424

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 186 NLHRQHSTTPR*PKSNTRAIHEELTPQEKW 97
           N+H  H  +PR P  N RA H+ L  QE W
Sbjct: 359 NVHIPHHISPRIPSYNLRAAHKSL--QENW 386
tr_hit_id B5WWZ8
Definition tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1 OS=Lotus japonicus
Align length 62
Score (bit) 37.4
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913274|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_D12.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1 OS=...    37   0.48 
tr|A7NXF0|A7NXF0_VITVI Chromosome chr5 scaffold_2, whole genome ...    36   1.1  
tr|Q0E1H7|Q0E1H7_ORYSJ Os02g0442200 protein OS=Oryza sativa subs...    36   1.4  
tr|A5AH38|A5AH38_VITVI Putative uncharacterized protein OS=Vitis...    36   1.4  
tr|B3RKC6|B3RKC6_TRIAD Predicted protein OS=Trichoplax adhaerens...    35   3.1  

>tr|B5WWZ8|B5WWZ8_LOTJA Long chain fatty alcohol oxidase FAO1
           OS=Lotus japonicus GN=fao1 PE=2 SV=1
          Length = 749

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
           F+ S+YL + + + E+I +  +  H G QNQ+     ++L LK +    +   NH+   C
Sbjct: 340 FSTSEYLSAMETVCERIGVTESCTHEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHFCGSC 399

Query: 53  SY 48
            Y
Sbjct: 400 GY 401


>tr|A7NXF0|A7NXF0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020305001
           PE=4 SV=1
          Length = 741

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
           F  SQY  +  A+ E+I +  T    G QNQ+ +   ++L LK +    +    HY   C
Sbjct: 335 FGSSQYFSAMDAVCERIGVTETCVEEGFQNQVLQKGCENLGLKVDLVPRNSSEKHYCGSC 394

Query: 53  SY 48
           SY
Sbjct: 395 SY 396


>tr|Q0E1H7|Q0E1H7_ORYSJ Os02g0442200 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0442200 PE=4 SV=1
          Length = 683

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 167 PQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCCSYPYYSTLSGP 21
           P   GNQ  I+ P      ++ N  +  G   HY + CSYP+++ L GP
Sbjct: 162 PPVGGNQQAIRPP------VRSNNCFNCGQAGHYINQCSYPHHAQLQGP 204


>tr|A5AH38|A5AH38_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019349 PE=4 SV=1
          Length = 741

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 233 FTCSQYLQSCKALDEKISIGSTPQHHGNQNQIQEPFMKSLHLKKNGYYESGLPNHYWDCC 54
           F  SQY  +  A+ E+I +  T    G QNQ+     ++L LK +    +    HY   C
Sbjct: 335 FGSSQYFSAMDAVCERIGVTETCAEEGFQNQVLRKGCENLGLKVDLVPRNSSEKHYCGSC 394

Query: 53  SY 48
           SY
Sbjct: 395 SY 396


>tr|B3RKC6|B3RKC6_TRIAD Predicted protein OS=Trichoplax adhaerens
           GN=TRIADDRAFT_52796 PE=4 SV=1
          Length = 452

 Score = 34.7 bits (78), Expect = 3.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -2

Query: 250 EVFGENLHAASIYKAAKHLMKKSPSAALHNTTVTKIKYKSHS*RAYTSRKMATTRVDFQT 71
           + F  +   AS+   A   +  + ++++  TT T I     S  A TS  +ATT    QT
Sbjct: 43  DYFESSFSGASVASTATSSVVSTATSSVAGTTATSI-----SSAASTSATLATTGASSQT 97

Query: 70  IIGTVAPIPTTQPC-QAPC 17
               + P PTT PC + PC
Sbjct: 98  ---PITPTPTTNPCLRNPC 113