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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913277
Clone id YMU001_000028_E03
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTTTTTAAAAAGGAAGAAGCGGATTACTCCTCTTCTCAGAACCTTGGTACAACTAAG
TATACAGATGAATGTGCCCAACTCTATGAGGAACTCCCTTCCAGAATTCCCTTCTATGGT
ACAAAAGCTTATATACACACCAGAGGTAAAGCCTTCAGGCTAAGACAACATCCCAGTCCA
GAGTGAAAGAATAAAGAATCATCCAATTTAGTCTCCCTCACAAAACTGCCCAGAGCTACC
TCATCTTTATTGAGCGCATCAATTTCATACTAGGTCCAATGAGACCACGCACCCAAATTT
GCTATGTACATTCAACATGTTTGACAAGAGCTGCCACTATTTCTTGTTGATACCCTTCAA
GTTCTTTAAAGTGATCACTAATTCGCCCCGTTCTGCCTCAGCTTCAGCAAG
■■Homology search results ■■ -
sp_hit_id Q32J23
Definition sp|Q32J23|CRL_SHIDS Sigma factor-binding protein crl OS=Shigella dysenteriae serotype 1 (strain Sd197)
Align length 44
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913277|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_E03.
         (411 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32J23|CRL_SHIDS Sigma factor-binding protein crl OS=Shigella...    34   0.26 
sp|Q6D1I2|CRL_ERWCT Sigma factor-binding protein crl OS=Erwinia ...    34   0.26 
sp|Q3Z597|CRL_SHISS Sigma factor-binding protein crl OS=Shigella...    33   0.45 
sp|Q83SI1|CRL_SHIFL Sigma factor-binding protein crl OS=Shigella...    33   0.45 
sp|Q0T7R1|CRL_SHIF8 Sigma factor-binding protein crl OS=Shigella...    33   0.45 
sp|Q325P6|CRL_SHIBS Sigma factor-binding protein crl OS=Shigella...    33   0.45 
sp|Q1RFT0|CRL_ECOUT Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|B1J0Z4|CRL_ECOLC Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|Q8FKM4|CRL_ECOL6 Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|Q0TL76|CRL_ECOL5 Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|A1A7V1|CRL_ECOK1 Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|A7ZWK3|CRL_ECOHS Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|A7ZHZ9|CRL_ECO24 Sigma factor-binding protein crl OS=Escheric...    33   0.45 
sp|P24251|CRL_ECOLI Sigma factor-binding protein crl OS=Escheric...    32   1.00 
sp|Q7CR52|CRL_SALTY Sigma factor-binding protein crl OS=Salmonel...    31   1.7  
sp|Q8XH11|CRL_SALTI Sigma factor-binding protein crl OS=Salmonel...    31   1.7  
sp|Q5PF66|CRL_SALPA Sigma factor-binding protein crl OS=Salmonel...    31   1.7  
sp|Q57ST5|CRL_SALCH Sigma factor-binding protein crl OS=Salmonel...    31   1.7  
sp|A9MNR7|CRL_SALAR Sigma factor-binding protein crl OS=Salmonel...    31   1.7  
sp|A8AKP8|CRL_CITK8 Sigma factor-binding protein crl OS=Citrobac...    31   1.7  
sp|P20122|ORF1A_CMVO Replication protein 1a OS=Cucumber mosaic v...    29   8.4  
sp|A4W6X2|CRL_ENT38 Sigma factor-binding protein crl OS=Enteroba...    29   8.5  

>sp|Q32J23|CRL_SHIDS Sigma factor-binding protein crl OS=Shigella
           dysenteriae serotype 1 (strain Sd197) GN=crl PE=3 SV=3
          Length = 133

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 269 YEIDALNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           Y    L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 7   YPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q6D1I2|CRL_ERWCT Sigma factor-binding protein crl OS=Erwinia
           carotovora subsp. atroseptica GN=crl PE=3 SV=1
          Length = 124

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALP 144
           L K+  ALG ++RE + +D+ FF   L  C+++K  P
Sbjct: 12  LMKNFTALGPYIREAQCEDTAFFFDCLAVCVNIKPAP 48


>sp|Q3Z597|CRL_SHISS Sigma factor-binding protein crl OS=Shigella
           sonnei (strain Ss046) GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q83SI1|CRL_SHIFL Sigma factor-binding protein crl OS=Shigella
           flexneri GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q0T7R1|CRL_SHIF8 Sigma factor-binding protein crl OS=Shigella
           flexneri serotype 5b (strain 8401) GN=crl PE=3 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q325P6|CRL_SHIBS Sigma factor-binding protein crl OS=Shigella
           boydii serotype 4 (strain Sb227) GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q1RFT0|CRL_ECOUT Sigma factor-binding protein crl OS=Escherichia
           coli (strain UTI89 / UPEC) GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LVKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|B1J0Z4|CRL_ECOLC Sigma factor-binding protein crl OS=Escherichia
           coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=crl PE=3
           SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q8FKM4|CRL_ECOL6 Sigma factor-binding protein crl OS=Escherichia
           coli O6 GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>sp|Q0TL76|CRL_ECOL5 Sigma factor-binding protein crl OS=Escherichia
           coli O6:K15:H31 (strain 536 / UPEC) GN=crl PE=3 SV=3
          Length = 133

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LVKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50
tr_hit_id Q1DHD9
Definition tr|Q1DHD9|Q1DHD9_COCIM Putative uncharacterized protein OS=Coccidioides immitis
Align length 113
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913277|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_E03.
         (411 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1DHD9|Q1DHD9_COCIM Putative uncharacterized protein OS=Cocci...    34   4.2  
tr|B6I020|B6I020_ECOSE Transcriptional regulator OS=Escherichia ...    33   7.1  
tr|B2U3T1|B2U3T1_SHIB3 Sigma factor-binding protein Crl OS=Shige...    33   7.1  
tr|B1LHT6|B1LHT6_ECOSM Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B7UJC8|B7UJC8_ECO27 DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B7NK85|B7NK85_ECOLX DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B7N8H1|B7N8H1_ECOLX DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B7MC90|B7MC90_ECOLX DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B7LNG0|B7LNG0_ESCFE DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B7L3Z2|B7L3Z2_ECOLX DNA-binding transcriptional regulator OS=...    33   7.1  
tr|B3XF54|B3XF54_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B3WZT2|B3WZT2_SHIDY Sigma factor-binding protein Crl OS=Shige...    33   7.1  
tr|B3WL76|B3WL76_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B3IJ69|B3IJ69_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B3I3N7|B3I3N7_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B3HQ83|B3HQ83_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B3H9V7|B3H9V7_ECOLX Sigma factor-binding protein Crl OS=Esche...    33   7.1  
tr|B2NAI1|B2NAI1_ECOLX Curlin genes transcriptional activator pr...    33   7.1  
tr|B1EL01|B1EL01_9ESCH Sigma factor-binding protein Crl OS=Esche...    33   7.1  

>tr|Q1DHD9|Q1DHD9_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_10274 PE=4 SV=1
          Length = 186

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +2

Query: 17  KKRITPLLRTLVQLSIQMNVPNSMRNSLPEFPSMVQKLIYTPEVKPSG*DNIP--VQSER 190
           KK I+P  R+ V+ S+Q ++ N    + P F   + +++  P+  P     +P  V    
Sbjct: 3   KKDISPGARSKVKSSVQRSLRNKFLETYPGFEPYIDEVM--PKKAPLEAVKLPDRVTLYL 60

Query: 191 IKNHPI*SPSQNCPELPHLY*AHQFHTRSNETTHPNLLCTFNMFDKSCHYFLL 349
             +HPI   S + P +PHL   H F         PN L T  + D+    F+L
Sbjct: 61  SDSHPIFFQSLDSPLIPHLRVLHAF---------PNALPTIGI-DRGAIRFVL 103


>tr|B6I020|B6I020_ECOSE Transcriptional regulator OS=Escherichia
           coli (strain SE11) GN=ECSE_0260 PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B2U3T1|B2U3T1_SHIB3 Sigma factor-binding protein Crl OS=Shigella
           boydii serotype 18 (strain CDC 3083-94 / BS512) GN=crl
           PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B1LHT6|B1LHT6_ECOSM Sigma factor-binding protein Crl
           OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=crl PE=4
           SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7UJC8|B7UJC8_ECO27 DNA-binding transcriptional regulator
           OS=Escherichia coli O127:H6 str. E2348/69 GN=crl PE=4
           SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7NK85|B7NK85_ECOLX DNA-binding transcriptional regulator
           OS=Escherichia coli GN=crl PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7N8H1|B7N8H1_ECOLX DNA-binding transcriptional regulator
           OS=Escherichia coli GN=crl PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7MC90|B7MC90_ECOLX DNA-binding transcriptional regulator
           OS=Escherichia coli GN=crl PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LVKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7LNG0|B7LNG0_ESCFE DNA-binding transcriptional regulator
           OS=Escherichia fergusonii GN=crl PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50


>tr|B7L3Z2|B7L3Z2_ECOLX DNA-binding transcriptional regulator
           OS=Escherichia coli GN=crl PE=4 SV=1
          Length = 133

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 254 LNKDEVALGSFVRETKLDDSLFFHSGLGCCLSLKALPLV 138
           L K   ALG ++RE K +D+ FF   L  C+++K  P V
Sbjct: 12  LIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEV 50