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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913300
Clone id YMU001_000028_G04
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGAAACTCCATAGCTATGGGTGCTAGCCATGCCCTGTTGAAGCTCCTCTGTTTCTTGTC
TCTTCTAGCTCATGGAATGTCTGCCTCAGATAAATTTAGACAGACCTCCCGGCATGCACG
AAGGGGCGCAGCGCCAGGTCCCTTTGCCACTTGCAGAACTACACCATACCCACAATTGTG
CTCTCACATTCTCCGCTCTTCATCAGCTTCGCCCACTTCTCCTCTCAATCGGCAGATAGC
CACAGTTTCCTCATTTGCATTGAGCCTCACATCCTCATCATATCAGCTCGCACGGCATCT
CGCGAGCATTCCGCCGCCCCGATCTGCTCCACACACATACAAAGGGGCACTTCAGGATTG
CATTGACCTGATGAGTAACACCATGGATCAGCTTAGGCTGTCAATTTCACGGCTTTCTGA
CCTCAACTTGGCGCGCTCATCGCCATATGTGCTAAGGTCTCGAATCATGGATGCGCAAGT
GT
■■Homology search results ■■ -
sp_hit_id Q9NZR2
Definition sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens
Align length 39
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913300|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_G04.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related p...    32   2.0  
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related p...    31   3.4  
sp|Q2FTS5|TYPH_METHJ Putative thymidine phosphorylase OS=Methano...    29   9.8  

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related
            protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2
          Length = 4599

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 389  DPWCYSSGQC--NPE--VPLCMCVEQIGAAECSRDAVRA 285
            D +CY+ G C  +PE  VP+C+C       +C R A ++
Sbjct: 4395 DGYCYNGGTCQLDPETNVPVCLCSTNWSGTQCERPAPKS 4433


>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related
            protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1
          Length = 4599

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 389  DPWCYSSGQC--NPE--VPLCMCVEQIGAAECSRDAVRA 285
            D +CY+ G C  +PE  +P+C+C       +C R A ++
Sbjct: 4395 DGYCYNGGTCQLDPETSIPVCVCSTNWSGTQCERPAPKS 4433


>sp|Q2FTS5|TYPH_METHJ Putative thymidine phosphorylase
           OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
           GN=Mhun_2262 PE=3 SV=1
          Length = 516

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 214 HFSSQSADSHSFLICIEPHILIISARTASREHSAAPICSTHIQRGTS 354
           HF +  ADS  ++I +  H LI  ARTA            H + GTS
Sbjct: 414 HFYTVRADSTGYVIDLNNHSLITIARTAGAPADHGAGLYLHAKHGTS 460
tr_hit_id O49298
Definition tr|O49298|O49298_ARATH Pectinesterase OS=Arabidopsis thaliana
Align length 85
Score (bit) 39.3
E-value 0.098
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913300|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_G04.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O49298|O49298_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    39   0.098
tr|Q84WE4|Q84WE4_ARATH Putative ripening-related protein (At5g20...    39   0.17 
tr|A5CBR6|A5CBR6_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A7P3R9|A7P3R9_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    38   0.28 
tr|A7PDP1|A7PDP1_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    37   0.37 
tr|A7Q8F9|A7Q8F9_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    37   0.49 
tr|Q8LE11|Q8LE11_ARATH Ripening-related protein-like OS=Arabidop...    37   0.63 
tr|Q6UAP2|Q6UAP2_TETNG Class I helical cytokine receptor member ...    36   0.83 
tr|Q9SG78|Q9SG78_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    36   0.83 
tr|Q94CB1|Q94CB1_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    36   0.83 
tr|Q6K7E3|Q6K7E3_ORYSJ Pectinesterase OS=Oryza sativa subsp. jap...    36   0.83 
tr|Q0DX02|Q0DX02_ORYSJ Pectinesterase OS=Oryza sativa subsp. jap...    36   0.83 
tr|A9NQ46|A9NQ46_PICSI Putative uncharacterized protein OS=Picea...    36   0.83 
tr|Q8L8X8|Q8L8X8_ARATH Putative ripening-related protein OS=Arab...    35   1.4  
tr|Q0Z7S4|Q0Z7S4_9SOLN Pectin methylesterase inhibitor isoform O...    35   1.4  
tr|O49603|O49603_ARATH Invertase inhibitor homologue (Putative i...    35   1.4  
tr|A7QVC4|A7QVC4_VITVI Chromosome chr2 scaffold_187, whole genom...    35   1.8  
tr|A7QAI5|A7QAI5_VITVI Chromosome undetermined scaffold_71, whol...    35   1.8  
tr|Q9FF77|Q9FF77_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    35   2.4  
tr|Q94FS5|Q94FS5_LINUS Pectinesterase OS=Linum usitatissimum GN=...    35   2.4  
tr|A9PDL3|A9PDL3_POPTR Putative uncharacterized protein OS=Popul...    34   3.1  
tr|A9PD34|A9PD34_POPTR Putative uncharacterized protein OS=Popul...    34   3.1  
tr|A9PBM0|A9PBM0_POPTR Putative uncharacterized protein OS=Popul...    34   3.1  
tr|A8NBT8|A8NBT8_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   3.1  
tr|Q0FJW7|Q0FJW7_9RHOB Alkylphosphonate utilization protein PhnG...    34   4.1  
tr|O48711|O48711_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    34   4.1  
tr|B7FFF5|B7FFF5_MEDTR Putative uncharacterized protein OS=Medic...    34   4.1  
tr|Q8GS16|Q8GS16_CITSI Pectinesterase OS=Citrus sinensis GN=PME4...    33   7.0  
tr|B6SZL3|B6SZL3_MAIZE Pectinesterase-2 OS=Zea mays PE=2 SV=1          33   7.0  
tr|A7Q4X4|A7Q4X4_VITVI Chromosome undetermined scaffold_51, whol...    33   7.0  

>tr|O49298|O49298_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At1g23200 PE=2 SV=1
          Length = 554

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +2

Query: 149 TCRTTPYPQLCSHILRSSSASPTSPLNRQIXXXXXXXXXXXXXXYQLARHLASIPPPRSA 328
           +C+ TPYP +C H + +S                           QL R ++S+    S 
Sbjct: 37  SCKQTPYPSVCDHHMSNSPLKTLDDQTDGFTFHDLVVSSTMDQAVQLHRLVSSLKQHHSL 96

Query: 329 PHTYKGALQDCIDLMSNTMDQLRLS 403
                 AL DC++L  +T+DQL  S
Sbjct: 97  HKHATSALFDCLELYEDTIDQLNHS 121


>tr|Q84WE4|Q84WE4_ARATH Putative ripening-related protein
           (At5g20740) OS=Arabidopsis thaliana GN=At5g20740 PE=2
           SV=1
          Length = 205

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
 Frame = +2

Query: 95  FRQTSRHARR-GAAPGPFATCRTTPYPQLCSHILRSSSASPTSPLNRQIXXXXXXXXXXX 271
           F  ++ H R  GA     ++C    YP LC   L SS + PT    R +           
Sbjct: 18  FTASTVHGRHNGAEDIVHSSCEHASYPSLCVRTL-SSYSGPTITNRRDLAQAAIKISLSH 76

Query: 272 XXXYQLARHLASIPPPRSAPHTYKGALQDCIDLMSNTMDQLRLSISRLSDLNLARSSPYV 451
                 A+ LA +          K AL DC++++ +++D+L  ++  L  L ++  S   
Sbjct: 77  AQ--SAAKKLAVVRDSVGKKKQEKAALVDCVEMIGDSVDELSRTLGVLKHLRVSGGSAKE 134

Query: 452 LRSRIMDAQ 478
            R ++ +AQ
Sbjct: 135 FRWQMSNAQ 143


>tr|A5CBR6|A5CBR6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041020 PE=4 SV=1
          Length = 204

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 149 TCRTTPYPQLC-SHILRSSSASPTSPLNRQIXXXXXXXXXXXXXXYQLARHLASIPPPRS 325
           +CRTT YPQLC S +L  +S   TSP                   +  +  +  +   +S
Sbjct: 44  SCRTTTYPQLCTSSLLSYASKIQTSPK----ILADTALSIALATAHSTSTAITKLSKTQS 99

Query: 326 APHTYKGALQDCIDLMSNTMDQLRLSISRL 415
                  A++DC++++ ++ D+L++SI  +
Sbjct: 100 LKPGEAAAIRDCVEVLGDSEDELQMSIQEM 129


>tr|A7P3R9|A7P3R9_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00030551001 PE=3 SV=1
          Length = 534

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 23/93 (24%), Positives = 42/93 (45%)
 Frame = +2

Query: 140 PFATCRTTPYPQLCSHILRSSSASPTSPLNRQIXXXXXXXXXXXXXXYQLARHLASIPPP 319
           P ++C  TPYP++C++ +   +  PT+ ++                  +    L S    
Sbjct: 25  PISSCSQTPYPEVCNYFI--GNYKPTAGIDEIQFPFRDRVLGVTMNQAKRLHLLVSAMDL 82

Query: 320 RSAPHTYKGALQDCIDLMSNTMDQLRLSISRLS 418
            S+    K A  DC++L  NT+D +  SI+ +S
Sbjct: 83  SSSDERTKLAWADCLELYENTIDLVNRSINSIS 115


>tr|A7PDP1|A7PDP1_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00016357001 PE=3 SV=1
          Length = 578

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
 Frame = +2

Query: 107 SRHARRGAAPGPFATCRTTPYPQLCSHILRS---SSASPTSPLNRQIXXXXXXXXXXXXX 277
           S+H    A P   ++C  T YP+LC   + S     A  T P +  I             
Sbjct: 47  SQHQNWAAHPIVKSSCSATLYPELCFSAVSSREGEEAKITKPKD-VIEAVLNFTITTVQH 105

Query: 278 XYQLARHLASIPPPRSAPHTYKGALQDCIDLMSNTMDQLRLSISRLSDLNLARS 439
            Y   +H+  I          K AL DC++++ +T+D+L  S   L D +L +S
Sbjct: 106 NYFTLQHI--IKTRLGLSPREKAALHDCLEMVDDTLDELHKSALDLQDYSLNKS 157


>tr|A7Q8F9|A7Q8F9_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00033038001 PE=3 SV=1
          Length = 571

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/102 (26%), Positives = 46/102 (45%)
 Frame = +2

Query: 146 ATCRTTPYPQLCSHILRSSSASPTSPLNRQIXXXXXXXXXXXXXXYQLARHLASIPPPRS 325
           A C+ T Y + C + L S+ A+ + P    +               Q +  L  +     
Sbjct: 67  AICQPTDYKEACVNSLTSAKANTSDP-KELVRTAFQVAINQISSALQNSTTLRDL---EK 122

Query: 326 APHTYKGALQDCIDLMSNTMDQLRLSISRLSDLNLARSSPYV 451
            P T KGAL++C +LM   +D LR S ++L   ++++   YV
Sbjct: 123 DPRT-KGALENCHELMDYAIDDLRNSFNKLGVFDISKIDDYV 163


>tr|Q8LE11|Q8LE11_ARATH Ripening-related protein-like OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 205

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
 Frame = +2

Query: 113 HARR-GAAPGPFATCRTTPYPQLCSHILRSSSASPTSPLNRQIXXXXXXXXXXXXXXYQL 289
           H R  GA     ++C    YP LC   L SS + PT    R +                 
Sbjct: 24  HGRHNGAEDIVHSSCGHASYPSLCVRTL-SSYSGPTITNRRDLAQAAIKISLSHAQ--SA 80

Query: 290 ARHLASIPPPRSAPHTYKGALQDCIDLMSNTMDQLRLSISRLSDLNLARSSPYVLRSRIM 469
           A+ LA +          K AL DC++++ +++D+L  ++  L  L ++  S    R ++ 
Sbjct: 81  AKKLAVVRDSVGKKKQEKAALVDCVEMIGDSVDELSRTLGVLKHLRVSGGSAKEFRWQMS 140

Query: 470 DAQ 478
           +AQ
Sbjct: 141 NAQ 143


>tr|Q6UAP2|Q6UAP2_TETNG Class I helical cytokine receptor member 14
           OS=Tetraodon nigroviridis GN=CRFA14 PE=2 SV=1
          Length = 314

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
 Frame = -2

Query: 346 PFVCVWSRSGRR------------NAREMPCELI**GCEAQCK*GNCGY 236
           PF C WSR+  R            N RE+PCEL   G   QC+  NC Y
Sbjct: 133 PFRCSWSRTASRSNAAVLLLNATRNGREIPCELDADGSGIQCEEDNCPY 181


>tr|Q9SG78|Q9SG78_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=T7M13.20 PE=3 SV=1
          Length = 617

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 140 PFATCRTTPYPQLCSHILRSSSASPTSPLNR---QIXXXXXXXXXXXXXXYQLARHLASI 310
           P   C++TPYP+LC  IL +  +SP+ P       I                 AR + S 
Sbjct: 77  PSLACKSTPYPKLCRTILNAVKSSPSDPYRYGKFTIKQCLKQASRLSKVITSYARRVES- 135

Query: 311 PPPRSAPHTYKGALQDCIDLMSNTMDQLRLSISRL 415
             P SA     GA+ DC +L   +++ L    + L
Sbjct: 136 -KPGSATAEEIGAVADCGELSELSVNYLETVTTEL 169


>tr|Q94CB1|Q94CB1_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At3g10720 PE=2 SV=1
          Length = 619

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 140 PFATCRTTPYPQLCSHILRSSSASPTSPLNR---QIXXXXXXXXXXXXXXYQLARHLASI 310
           P   C++TPYP+LC  IL +  +SP+ P       I                 AR + S 
Sbjct: 79  PSLACKSTPYPKLCRTILNAVKSSPSDPYRYGKFTIKQCLKQASRLSKVITSYARRVES- 137

Query: 311 PPPRSAPHTYKGALQDCIDLMSNTMDQLRLSISRL 415
             P SA     GA+ DC +L   +++ L    + L
Sbjct: 138 -KPGSATAEEIGAVADCGELSELSVNYLETVTTEL 171