BP913301 |
Clone id |
YMU001_000028_G05 |
Library |
YMU01 |
Length |
482 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000028_G05. |
Accession |
BP913301 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TCATGCCCTAGCAAGTGCGTGTGAGAGAGACGACACTGTCTTTTGAACCTAAACCCTGGA TCTGATGCTGTTGGGCAGTATTCCGTAGCTTCAGGAGGTCATTTACCTAGACACCTCAAG ATGGAACAGATTCTTTCTAGATCATCCCTATGGCATATTTCATGCAGAGCTCCACTTTAT GTGAGGTATGGTAGAACTATGGGTTCTCAAGCTGTTGGTGTACAGGAGGTGGAAGCCGAT GACACTAAATACCGGCGATGGCAGGCAGATGAGACTAAGATACTCATTAAGGCAAAAAAA CAGTATTGTCTGGGGAAATTGGAACAAAGAGAGACATTTTGGGCTCAACTGAAGAAGGCT ATAAGCGATTGGAAGGACATGGAGACTATGATACTCGTTGCGGCAAGAGCCCAGGATTAT CTGGAGAACTTGGAACGCAGAGAAACATTTGGGGCTGAACTGAAGAAGTTTAATATCAAT TG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9KDV2 |
Definition |
sp|Q9KDV2|GALT_BACHD Galactose-1-phosphate uridylyltransferase OS=Bacillus halodurans |
Align length |
88 |
Score (bit) |
32.3 |
E-value |
1.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913301|Adiantum capillus-veneris mRNA, clone: YMU001_000028_G05. (482 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9KDV2|GALT_BACHD Galactose-1-phosphate uridylyltransferase O... 32 1.2 sp|Q9FGR8|FBD19_ARATH Putative FBD-associated F-box protein At5g... 32 2.0 sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sa... 31 2.6 sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinas... 31 2.6 sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kin... 31 2.6 sp|Q9YHY9|OTC_CHICK Ornithine carbamoyltransferase, mitochondria... 31 3.4 sp|B4MQL8|EIF3B_DROWI Eukaryotic translation initiation factor 3... 30 4.4 sp|B3ME25|EIF3B_DROAN Eukaryotic translation initiation factor 3... 30 4.4 sp|Q54E36|XPO2_DICDI Exportin-2 OS=Dictyostelium discoideum GN=x... 30 5.7 sp|Q9YGN1|SAND_FUGRU Protein SAND OS=Fugu rubripes GN=sand PE=3 ... 30 5.7 sp|B4LM71|EIF3B_DROVI Eukaryotic translation initiation factor 3... 29 9.8 sp|B4KNN9|EIF3B_DROMO Eukaryotic translation initiation factor 3... 29 9.8
>sp|Q9KDV2|GALT_BACHD Galactose-1-phosphate uridylyltransferase OS=Bacillus halodurans GN=galT PE=3 SV=1 Length = 508
Score = 32.3 bits (72), Expect = 1.2 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%) Frame = +2
Query: 119 RWNRFFLDHPYGIF--HAELHFM----*GMVELWVLKLLVYRRWKPM-----TLNTGDGR 265 R NR +HP GIF H E+H + G++E+ L +L R + + L + D R Sbjct: 377 RNNRTSKEHPDGIFHPHQEVHHIKKENIGLIEVMGLAVLPGRLKEELELLAEALLSSDPR 436
Query: 266 QMRLRYSLRQKNSIVWGNWNKERHFGLN 349 Q+ RY QK+ W KERH L+ Sbjct: 437 QVIARYEQIQKHE-AWALAIKERHAHLH 463
>sp|Q9FGR8|FBD19_ARATH Putative FBD-associated F-box protein At5g50270 OS=Arabidopsis thaliana GN=At5g50270 PE=4 SV=1 Length = 423
Score = 31.6 bits (70), Expect = 2.0 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Frame = -3
Query: 432 QVLQIILGSCRNEYHSLHVLPIAYSLLQLSPKCLSL------FQFPQTILFFCLNEYLSL 271 +++ I L +C +E+ L + LL+ SPK +SL FQF Q +++ + L Sbjct: 300 RLVHITLCTCDDEW-----LNLLACLLKGSPKLISLKLEKVIFQFIQCLMYRLSQHHGHL 354
Query: 270 ICLPSPV 250 IC PSP+ Sbjct: 355 ICSPSPL 361
>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=2 SV=2 Length = 1720
Score = 31.2 bits (69), Expect = 2.6 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = +1
Query: 247 KYRRWQADETKILIKAKKQYCLGKLEQRETFWAQLKKAISD------WKDMETMILVAAR 408 + + WQAD + L + +Y + ++ T W +K + D + ++ M+++A + Sbjct: 298 RIKTWQADTSTTLSSIRSKYKVNPIKVDPTMWDTIKNDVKDDRILIEFDTLKEMVILAGK 357
Query: 409 AQD 417 ++D Sbjct: 358 SED 360
>sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinase 1 OS=Rattus norvegicus GN=Map3k1 PE=1 SV=1 Length = 1493
Score = 31.2 bits (69), Expect = 2.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2
Query: 424 PDNPGLLPQRVS*SPCPSNRL*PSSVEPKMSLFVPISPDNT 302 P++PG+ +RVS P S R+ P P F P SP+ T Sbjct: 254 PESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPEET 294
>sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kinase 1 OS=Mus musculus GN=Map3k1 PE=1 SV=3 Length = 1493
Score = 31.2 bits (69), Expect = 2.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2
Query: 424 PDNPGLLPQRVS*SPCPSNRL*PSSVEPKMSLFVPISPDNT 302 P++PG+ +RVS P S R+ P P F P SP+ T Sbjct: 259 PESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPEET 299
>sp|Q9YHY9|OTC_CHICK Ornithine carbamoyltransferase, mitochondrial OS=Gallus gallus GN=OTC PE=1 SV=1 Length = 354
Score = 30.8 bits (68), Expect = 3.4 Identities = 21/69 (30%), Positives = 26/69 (37%) Frame = +1
Query: 100 HLPRHLKMEQILSRSSLWHISCRAPLYVRYGRTMGSQAVGVQEVEADDTKYRRWQADETK 279 HLPRH CR P G + +Q AD+ KY W A + K Sbjct: 20 HLPRHF---------------CRGPPNQMNVCLKGRDLLTLQNYTADELKYLLWVASDLK 64
Query: 280 ILIKAKKQY 306 IK K +Y Sbjct: 65 QRIKDKGEY 73
>sp|B4MQL8|EIF3B_DROWI Eukaryotic translation initiation factor 3 subunit B OS=Drosophila willistoni GN=eIF3-S9 PE=3 SV=1 Length = 690
Score = 30.4 bits (67), Expect = 4.4 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +1
Query: 250 YRRWQADETKILIKAKKQYCLGKLEQRETFWAQLKKAISDWKDMETMILVAARAQDYLEN 429 Y ++ + L +A K+ + + RETF K I++WKD ++ V R +N Sbjct: 609 YPAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWKDQKSR-RVMLRGHVDTDN 667
Query: 430 LERRE 444 LE E Sbjct: 668 LETEE 672
>sp|B3ME25|EIF3B_DROAN Eukaryotic translation initiation factor 3 subunit B OS=Drosophila ananassae GN=eIF3-S9 PE=3 SV=1 Length = 686
Score = 30.4 bits (67), Expect = 4.4 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1
Query: 283 LIKAKKQYCLGKLEQRETFWAQLKKAISDWKDMETMILVAARAQDYLENLERRE 444 L +A K+ + + RETF K I++WKD ++ V R +NLE E Sbjct: 616 LTRASKELLEKRAQLRETFMEYRNKRIAEWKDQKSR-RVMLRGHVDTDNLETEE 668
>sp|Q54E36|XPO2_DICDI Exportin-2 OS=Dictyostelium discoideum GN=xpo2 PE=3 SV=1 Length = 951
Score = 30.0 bits (66), Expect = 5.7 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -3
Query: 462 QFSPKCFSAFQVLQIILGSCRNEYHSLH--VLPIAYS 358 +FSP CF Q+L I++ +CR EY L +LPI ++ Sbjct: 658 EFSPYCF---QLLSILVENCRPEYLDLFRPILPIIFN 691
>sp|Q9YGN1|SAND_FUGRU Protein SAND OS=Fugu rubripes GN=sand PE=3 SV=1 Length = 520
Score = 30.0 bits (66), Expect = 5.7 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = +1
Query: 172 PLYVRYGR------TMGSQAVGVQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQ 327 P+Y RYG TMG V VE+D R AD K++ AK L + Q Sbjct: 132 PIYTRYGSEEALSSTMGVMMALVSFVESDKNTIRSIHADGCKVIFLAKSPLVLVGVSQ 189
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q22G02 |
Definition |
tr|Q22G02|Q22G02_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 |
Align length |
81 |
Score (bit) |
39.3 |
E-value |
0.098 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913301|Adiantum capillus-veneris mRNA, clone: YMU001_000028_G05. (482 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q22G02|Q22G02_TETTH Putative uncharacterized protein OS=Tetra... 39 0.098 tr|B4VM87|B4VM87_9CYAN Putative uncharacterized protein OS=Micro... 35 1.8 tr|Q5XBA4|Q5XBA4_STRP6 COME operon protein 3 OS=Streptococcus py... 35 2.4 tr|B6PUW3|B6PUW3_BRAFL Putative uncharacterized protein (Fragmen... 34 4.1 tr|O58643|O58643_PYRHO 397aa long hypothetical NADH oxidase OS=P... 34 4.1 tr|Q1IMY4|Q1IMY4_ACIBL PpiC-type peptidyl-prolyl cis-trans isome... 33 7.0 tr|Q1I5G2|Q1I5G2_PSEE4 Putative uncharacterized protein OS=Pseud... 33 7.0 tr|Q3K7X1|Q3K7X1_PSEPF RDD OS=Pseudomonas fluorescens (strain Pf... 33 9.2 tr|B6M462|B6M462_BRAFL Putative uncharacterized protein (Fragmen... 33 9.2 tr|A8P380|A8P380_BRUMA RH17657p, putative OS=Brugia malayi GN=Bm... 33 9.2
>tr|Q22G02|Q22G02_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00721550 PE=4 SV=1 Length = 2778
Score = 39.3 bits (90), Expect = 0.098 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Frame = -3
Query: 444 FSAFQV--LQIILGSCRNEYHSLHVLPIAYSLLQLSPKCLSLFQFPQTILFFCLNEYLSL 271 F +F++ +I++ +++YH +++ +Y + +S CL + + QTI +CL++Y+SL Sbjct: 1391 FFSFKISSAEILVFPSKSQYHVINIQTNSYQIYNISYSCLQIKYYNQTI--YCLDQYISL 1448
Query: 270 ICLPSPVFSVIGFHLLYTNSL 208 S FSV+ +L +S+ Sbjct: 1449 FYTNSS-FSVLDTNLQKESSI 1468
>tr|B4VM87|B4VM87_9CYAN Putative uncharacterized protein OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_1961 PE=4 SV=1 Length = 1163
Score = 35.0 bits (79), Expect = 1.8 Identities = 22/78 (28%), Positives = 38/78 (48%) Frame = -3
Query: 402 RNEYHSLHVLPIAYSLLQLSPKCLSLFQFPQTILFFCLNEYLSLICLPSPVFSVIGFHLL 223 + + LP+ L L + L+ Q PQT LF ++E +++ L PV GF + Sbjct: 107 KKRWQDWETLPMVQQLGLLMDEVLA--QLPQTRLFIFVDEIDTILSLSFPVNDFFGF-IR 163
Query: 222 YTNSLRTHSSTIPHIKWS 169 Y + LR + +T + W+ Sbjct: 164 YCHELRQNQATYQRLTWA 181
>tr|Q5XBA4|Q5XBA4_STRP6 COME operon protein 3 OS=Streptococcus pyogenes serotype M6 GN=M6_Spy1174 PE=4 SV=1 Length = 524
Score = 34.7 bits (78), Expect = 2.4 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Frame = -3
Query: 480 IDIKLLQFSPKCFSAFQVLQIILGSCRNEYHSLHVLPIAYSLLQLSP-----KCLSLFQF 316 I + +L F FS+F + ++L + + + +L +LP+ + LSP C LF F Sbjct: 362 ISLGILSFLLFYFSSFNPMSMVLTALLSYFFALFILPLLCLVFCLSPLITLSGCNYLFLF 421
Query: 315 PQTILFFCLNEYLSLICLPSP-----VFSVIGFHLLY 220 + ++ F N + S + SP + VI F + Y Sbjct: 422 LEKVIQFLGNTFNSSLVFGSPTSWHLLILVISFAIFY 458
>tr|B6PUW3|B6PUW3_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_274385 PE=4 SV=1 Length = 291
Score = 33.9 bits (76), Expect = 4.1 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +1
Query: 286 IKAKKQYCLGKLEQRETFWAQLKKAISDWKDMET 387 IKAKKQ C+ E+ + F+ L+ + DW+D+ T Sbjct: 156 IKAKKQECIKSYEELKPFFPSLEPLLPDWEDIFT 189
>tr|O58643|O58643_PYRHO 397aa long hypothetical NADH oxidase OS=Pyrococcus horikoshii GN=PH0890 PE=4 SV=1 Length = 397
Score = 33.9 bits (76), Expect = 4.1 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +1
Query: 136 SRSSLWHISCRAPLYVRYGRTMGSQAVGVQEVEADDTKYRRWQADETKILIKAKKQYCLG 315 +R +WH S A L++ GR G+Q VG KY A + L++ ++ + Sbjct: 328 ARKEIWHGSHIAKLFIENGRLNGAQLVG---------KYALQYAGTIEYLVRTRRPIRID 378
Query: 316 KLEQRETFWAQLKKAI 363 + +TF ++ KA+ Sbjct: 379 SISDTKTFIKEVWKAM 394
>tr|Q1IMY4|Q1IMY4_ACIBL PpiC-type peptidyl-prolyl cis-trans isomerase OS=Acidobacteria bacterium (strain Ellin345) GN=Acid345_2765 PE=3 SV=1 Length = 654
Score = 33.1 bits (74), Expect = 7.0 Identities = 27/98 (27%), Positives = 40/98 (40%) Frame = +1
Query: 181 VRYGRTMGSQAVGVQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQRETFWAQLKKA 360 ++Y +GS+ GVQ +AD KY E I A Q+ L + Q Sbjct: 238 IKYVSVIGSKLPGVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQ----------- 286
Query: 361 ISDWKDMETMILVAARAQDYLENLERRETFGAELKKFN 474 D +T A+A+DYL+ FG KK++ Sbjct: 287 ---GADAKTDAAAKAKAEDYLKQARGGANFGELAKKYS 321
>tr|Q1I5G2|Q1I5G2_PSEE4 Putative uncharacterized protein OS=Pseudomonas entomophila (strain L48) GN=PSEEN4440 PE=4 SV=1 Length = 162
Score = 33.1 bits (74), Expect = 7.0 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = +1
Query: 169 APLYVRYGRTMGSQAVGVQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQRETFWAQ 348 A + G+T+G Q GV+ AD + WQA + ++ CLG FW+ Sbjct: 83 AKFWTHGGQTLGMQVWGVRVQNADGSAISLWQA-LLRFVVSIASWLCLG----LGFFWSM 137
Query: 349 LKKAISDWKDM 381 + K W D+ Sbjct: 138 IDKRQRSWHDI 148
>tr|Q3K7X1|Q3K7X1_PSEPF RDD OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pf01_4396 PE=4 SV=1 Length = 162
Score = 32.7 bits (73), Expect = 9.2 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = +1
Query: 169 APLYVRYGRTMGSQAVGVQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQRETFWAQ 348 A + G+T+G Q G++ AD T WQA + ++ CLG FW+ Sbjct: 83 AKFWTHAGQTLGMQVWGIRVQNADGTAISLWQA-LLRFMVSIASWLCLG----LGFFWSL 137
Query: 349 LKKAISDWKDM 381 K W D+ Sbjct: 138 FDKQKRAWHDI 148
>tr|B6M462|B6M462_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_218254 PE=4 SV=1 Length = 137
Score = 32.7 bits (73), Expect = 9.2 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = +1
Query: 217 GVQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQRETFWAQLKKAI--SDWKDMETM 390 G+Q ++ + T++ + ++DE K L + ++Q KL++ + Q KKA+ D K+ + Sbjct: 18 GMQRLQQEMTEFEKLKSDELKRLEEFRQQEA-AKLKKERKLFEQHKKALLQPDKKERAEI 76
Query: 391 ILVAARAQDYLENLERRE 444 + + Q+ + L+RRE Sbjct: 77 EELREQVQELQDELQRRE 94
>tr|A8P380|A8P380_BRUMA RH17657p, putative OS=Brugia malayi GN=Bm1_15245 PE=4 SV=1 Length = 173
Score = 32.7 bits (73), Expect = 9.2 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = +1
Query: 220 VQEVEADDTKYRRWQADETKILIKAKKQYCLGKLEQRETFWAQLKKA--ISDWKDMETMI 393 +Q++ D + WQ + TK+ A K C +EQ E A +KA +S W+ +E + Sbjct: 74 LQDLPTDGSAVHYWQFERTKLKQWAAKYLCPSDIEQYERNLAYFEKANILSRWRKIEQRV 133
|