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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913306
Clone id YMU001_000028_G10
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCATCGCACTAAGGATATGGGTGGAAATAGTACCACACAAGAGATGGTCGATGCAGTGAT
TGAGAAATGGGGATAAGGAACATTCTGTTCGGGAAGACCAAGAGATAACTATGGTCTGTT
CAGAGTTATTTGTCTCCGATTCGGATATATTGAGGACAGAGGCCCAGAATAAGATCATCC
TCTTGGGTAAGTTCCAATCTCTACAAAAGTTGACCCACAAGTGCGACTAACCGTTGTATC
TCTAGTGTATGATAGAGGTTATGAAAA
■■Homology search results ■■ -
sp_hit_id Q8LFC0
Definition sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana
Align length 21
Score (bit) 37.7
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913306|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_G10.
         (267 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory s...    38   0.018
sp|P93032|IDH2_ARATH Isocitrate dehydrogenase [NAD] regulatory s...    37   0.031
sp|O81796|IDH3_ARATH Isocitrate dehydrogenase [NAD] regulatory s...    35   0.090
sp|P87257|LEU3B_ASPNG 3-isopropylmalate dehydrogenase B OS=Asper...    31   1.7  
sp|O31626|YJCD_BACSU Putative ATP-dependent DNA helicase yjcD OS...    30   2.9  
sp|Q93353|IDH3B_CAEEL Probable isocitrate dehydrogenase [NAD] su...    30   2.9  
sp|P34738|LEU3_NEUCR 3-isopropylmalate dehydrogenase OS=Neurospo...    30   5.0  
sp|Q8Y5N2|NADA_LISMO Quinolinate synthetase A OS=Listeria monocy...    29   6.5  
sp|Q02143|LEU3_LACLA 3-isopropylmalate dehydrogenase OS=Lactococ...    29   6.5  
sp|Q8C351|LAYN_MOUSE Layilin OS=Mus musculus GN=Layn PE=1 SV=3         29   6.5  

>sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory
           subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1
           PE=1 SV=2
          Length = 367

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVIEK 67
           RTKD+GG STTQE+VDAVI K
Sbjct: 345 RTKDLGGTSTTQEVVDAVIAK 365


>sp|P93032|IDH2_ARATH Isocitrate dehydrogenase [NAD] regulatory
           subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2
           PE=1 SV=2
          Length = 367

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVI 61
           RT+D+GGNSTTQE+VDAVI
Sbjct: 345 RTEDLGGNSTTQEVVDAVI 363


>sp|O81796|IDH3_ARATH Isocitrate dehydrogenase [NAD] regulatory
           subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3
           PE=1 SV=1
          Length = 368

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVI 61
           +RTKD+GG+ TTQE+VDAVI
Sbjct: 345 YRTKDLGGDCTTQEVVDAVI 364


>sp|P87257|LEU3B_ASPNG 3-isopropylmalate dehydrogenase B
           OS=Aspergillus niger GN=leu2B PE=2 SV=1
          Length = 371

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVI 61
           RT D+GGNS+TQE  DAV+
Sbjct: 346 RTPDLGGNSSTQEFGDAVV 364


>sp|O31626|YJCD_BACSU Putative ATP-dependent DNA helicase yjcD
           OS=Bacillus subtilis GN=yjcD PE=1 SV=1
          Length = 759

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 75  KEHSVREDQEITMVCSELFVSDSDIL-RTEAQNKIILLGKFQSLQKLTHK 221
           KEHS  +  ++   C ELF+   D+L + +++   IL+ +FQ +  + +K
Sbjct: 309 KEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYK 358


>sp|Q93353|IDH3B_CAEEL Probable isocitrate dehydrogenase [NAD]
           subunit beta, mitochondrial OS=Caenorhabditis elegans
           GN=C37E2.1 PE=1 SV=1
          Length = 379

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVIEKW 70
           RT+D+GG +TT +  DAVI+K+
Sbjct: 356 RTRDLGGYATTVDFADAVIDKF 377


>sp|P34738|LEU3_NEUCR 3-isopropylmalate dehydrogenase OS=Neurospora
           crassa GN=leu-1 PE=3 SV=2
          Length = 368

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVI 61
           +TKD+GGN+TT +M +AV+
Sbjct: 341 KTKDLGGNATTSDMGNAVV 359


>sp|Q8Y5N2|NADA_LISMO Quinolinate synthetase A OS=Listeria
           monocytogenes GN=nadA PE=3 SV=1
          Length = 366

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +3

Query: 30  VPHKRWSMQ*LRNGDKEHSVREDQEIT 110
           +PH  W+++ ++NG+K + ++ D++ T
Sbjct: 326 LPHLLWTLEAIQNGEKRNQIKVDEQTT 352


>sp|Q02143|LEU3_LACLA 3-isopropylmalate dehydrogenase OS=Lactococcus
           lactis subsp. lactis GN=leuB PE=3 SV=3
          Length = 345

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 8   TKDMGGNSTTQEMVDAVIE 64
           TKD+GG +TT+EM +A+++
Sbjct: 324 TKDLGGTATTKEMTEAILK 342


>sp|Q8C351|LAYN_MOUSE Layilin OS=Mus musculus GN=Layn PE=1 SV=3
          Length = 381

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 169 FWASVLNISESETNNSEQTIVISWSSRTECSLSPFLNHCIDHLLCGT 29
           FW  +  + E ++NN+    + +W   T+ S S F N  +D   CG+
Sbjct: 104 FWIGLKRLEEKQSNNTACQDLYAW---TDGSTSQFRNWYVDEPSCGS 147
tr_hit_id B8LPK1
Definition tr|B8LPK1|B8LPK1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 21
Score (bit) 41.6
E-value 0.02
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913306|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_G10.
         (267 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPK1|B8LPK1_PICSI Putative uncharacterized protein OS=Picea...    42   0.020
tr|B4FYN6|B4FYN6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.075
tr|A9TE71|A9TE71_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|B4FRW8|B4FRW8_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.17 
tr|A9SPK5|A9SPK5_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|Q84TU3|Q84TU3_BRANA NAD-dependent isocitrate dehydrogenase be...    38   0.29 
tr|Q84JL9|Q84JL9_BRANA NAD-dependent isocitrate dehydrogenase be...    38   0.29 
tr|A7P8I7|A7P8I7_VITVI Chromosome chr3 scaffold_8, whole genome ...    37   0.49 
tr|Q9ZNX0|Q9ZNX0_TOBAC NAD-dependent isocitrate dehydrogenase OS...    36   0.83 
tr|Q6ZI55|Q6ZI55_ORYSJ Os02g0595500 protein OS=Oryza sativa subs...    36   1.1  
tr|A7R4Q3|A7R4Q3_VITVI Chromosome undetermined scaffold_758, who...    36   1.1  
tr|A7R131|A7R131_VITVI Chromosome undetermined scaffold_334, who...    36   1.1  
tr|A3A8M2|A3A8M2_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A2X6Q9|A2X6Q9_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q7XK23|Q7XK23_ORYSJ cDNA clone:J023001I19, full insert sequen...    35   1.4  
tr|Q5U8V3|Q5U8V3_MAIZE NAD-dependent isocitrate dehydrogenase (F...    35   1.4  
tr|Q33E21|Q33E21_ORYSJ NAD-dependent isocitrate dehydrogenase c;...    35   1.4  
tr|Q0JCD0|Q0JCD0_ORYSJ Os04g0479200 protein (Fragment) OS=Oryza ...    35   1.4  
tr|Q01JY8|Q01JY8_ORYSA OSIGBa0116M22.11 protein OS=Oryza sativa ...    35   1.4  
tr|B6TJD7|B6TJD7_MAIZE Isocitrate dehydrogenase subunit 1 OS=Zea...    35   1.4  
tr|B4FID6|B4FID6_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.4  
tr|A2XUP0|A2XUP0_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|Q84JH3|Q84JH3_BRANA NAD-dependent isocitrate dehydrogenase ga...    35   2.4  
tr|A9T1S8|A9T1S8_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|A9V4K9|A9V4K9_MONBE Predicted protein OS=Monosiga brevicollis...    34   4.1  
tr|Q9ZNX1|Q9ZNX1_TOBAC NAD-dependent isocitrate dehydrogenase OS...    33   5.4  
tr|Q5A9D9|Q5A9D9_CANAL Putative uncharacterized protein LYS12 OS...    33   7.1  
tr|B1C507|B1C507_9FIRM Putative uncharacterized protein OS=Clost...    33   9.2  

>tr|B8LPK1|B8LPK1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 378

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVIEK 67
           RTKD+GG STTQEMVDAVIEK
Sbjct: 356 RTKDLGGESTTQEMVDAVIEK 376


>tr|B4FYN6|B4FYN6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 373

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVIEKWG 73
           +RTKD+GG STTQE++DAVI K G
Sbjct: 350 YRTKDLGGTSTTQEVIDAVIAKLG 373


>tr|A9TE71|A9TE71_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144112 PE=3 SV=1
          Length = 349

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVIEK 67
           +RTKD+GG STTQ++VDAVIEK
Sbjct: 326 YRTKDLGGTSTTQDVVDAVIEK 347


>tr|B4FRW8|B4FRW8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 375

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVIEKWG 73
           +RTKD+GG STTQE+ DAVI K G
Sbjct: 352 YRTKDLGGTSTTQEVTDAVIAKLG 375


>tr|A9SPK5|A9SPK5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_133156 PE=3 SV=1
          Length = 349

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/22 (72%), Positives = 21/22 (95%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVIEK 67
           +RTKD+GG STTQ++VDAVI+K
Sbjct: 326 YRTKDLGGTSTTQDVVDAVIDK 347


>tr|Q84TU3|Q84TU3_BRANA NAD-dependent isocitrate dehydrogenase beta
           subunit OS=Brassica napus PE=2 SV=1
          Length = 367

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVIEK 67
           RTKD+GG STTQE+VDAVI K
Sbjct: 345 RTKDLGGQSTTQEVVDAVIAK 365


>tr|Q84JL9|Q84JL9_BRANA NAD-dependent isocitrate dehydrogenase beta
           subunit OS=Brassica napus PE=2 SV=1
          Length = 367

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVIEK 67
           RTKD+GG STTQE+VDAVI K
Sbjct: 345 RTKDLGGQSTTQEVVDAVIAK 365


>tr|A7P8I7|A7P8I7_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036195001
           PE=3 SV=1
          Length = 372

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVI 61
           +RTKD+GG STTQE+VDAVI
Sbjct: 349 YRTKDLGGTSTTQEVVDAVI 368


>tr|Q9ZNX0|Q9ZNX0_TOBAC NAD-dependent isocitrate dehydrogenase
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 357

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +2

Query: 5   RTKDMGGNSTTQEMVDAVI 61
           RTKD+GG+STTQE+VDA+I
Sbjct: 335 RTKDLGGDSTTQEVVDAII 353


>tr|Q6ZI55|Q6ZI55_ORYSJ Os02g0595500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1126_D09.28 PE=1 SV=1
          Length = 378

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   HRTKDMGGNSTTQEMVDAVI 61
           +RTKD+GG+STTQE+ DAVI
Sbjct: 355 YRTKDLGGSSTTQEVTDAVI 374