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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913314
Clone id YMU001_000028_H06
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAGTCTTTTTGATAAATATGTTGAATCATGATAATTCATGAGTTTTGTAGTCATC
AGGAGCTCAAGGAAGCAGAATGTGTTCGCATGTCTGTGTCTGTTTACTAAATGTATCAAG
ATTATAAGGTTCTACATTATGGTCTGCCATTGGTGTGCAGCTACATCATGACTTATGATA
TTTGTAAAGTTTGTCAAGCTACTCAAAGCTAGCATTCAAACTGTATTTTCTATTATGCCG
ACTTCGAAAGGTCCAAAAATAGTGGCCTTAATGGCATCAATATTCTCAGTTCAGGGCTAT
GGGAGGTGATGCATGGCATCTTGGTGGGGAGAAACGGTCCACTTTGTCTTCTCTACACTG
GAGTAAAGCTGTTGATACAATTCAGATGAAGGGTTCTAAGCCACTTACACAATCAGGGCT
TGTATATAGATTTCTATGACAAATGAGATGGTGTGCAATTTCAATATTTATTTCAGGCCT
CG
■■Homology search results ■■ -
sp_hit_id P0C6V1
Definition sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM)
Align length 42
Score (bit) 32.7
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913314|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_H06.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir...    33   0.89 
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir...    33   0.89 
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronaviru...    33   0.89 
sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain...    31   3.4  
sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog O...    30   4.4  
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronaviru...    30   5.7  
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav...    30   5.7  
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronaviru...    30   7.5  
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronaviru...    30   7.5  
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavir...    30   7.5  
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavir...    30   7.5  
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronav...    30   7.5  
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavi...    30   7.5  
sp|Q68798|POLG_HCVJL Genome polyprotein OS=Hepatitis C virus gen...    29   9.8  
sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus gen...    29   9.8  
sp|Q9W594|GR02A_DROME Putative gustatory receptor 2a OS=Drosophi...    29   9.8  

>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
            (strain JHM) GN=1a PE=1 SV=1
          Length = 4474

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4431 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4472


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
            (strain A59) GN=1a PE=1 SV=1
          Length = 4468

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4466


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
            (strain 2) GN=1a PE=3 SV=1
          Length = 4416

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain
           HZ) GN=eno PE=3 SV=1
          Length = 429

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 266 ATIFGPFEVGIIENTV*MLALSSLTNFTNIISH 168
           A +  P ++G +  T+  + L+S++NF +I+SH
Sbjct: 337 AVLIKPNQIGTLSETIEAIRLASMSNFNSIVSH 369


>sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog
           OS=Xenopus laevis PE=2 SV=1
          Length = 987

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 189 VCQATQS*HSNCIFYYADFERSKNSGLN-GINILSSGLWEVM 311
           V Q  Q  HS   FY  D E+ K SGL    ++ +  +WEV+
Sbjct: 652 VLQQLQELHSTIFFYLVDVEKGKLSGLRLNKDLSTEEIWEVL 693


>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
            OC43 GN=1a PE=3 SV=1
          Length = 4383

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+      +    + LNG  +
Sbjct: 4340 SYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain A59) GN=rep PE=1 SV=1
          Length = 7176

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGI 278
            SY++T+D+C+VC   +    +C+   + F+    + LN I
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNRI 4464


>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus
            (strain Quebec) GN=1a PE=3 SV=1
          Length = 4383

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+      +    + LNG  +
Sbjct: 4340 SYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381


>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus
            (strain Mebus) GN=1a PE=3 SV=1
          Length = 4383

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+      +    + LNG  +
Sbjct: 4340 SYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381


>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus
            (strain 98TXSF-110-LUN) GN=1a PE=3 SV=1
          Length = 4383

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+      +    + LNG  +
Sbjct: 4340 SYVLTHDVCQVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381
tr_hit_id A8P271
Definition tr|A8P271|A8P271_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 51
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913314|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_H06.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P271|A8P271_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|Q5CQ19|Q5CQ19_CRYPV Putative uncharacterized protein OS=Crypt...    33   7.0  
tr|Q9J3F8|Q9J3F8_9CORO RNA-directed RNA polymerase OS=Murine hep...    33   9.2  
tr|Q9J3F3|Q9J3F3_9CORO RNA-directed RNA polymerase OS=Murine hep...    33   9.2  
tr|Q9J3E9|Q9J3E9_9CORO RNA-directed RNA polymerase OS=Murine hep...    33   9.2  
tr|Q66WN5|Q66WN5_9CORO Replicative polyprotein 1a OS=Murine hepa...    33   9.2  

>tr|A8P271|A8P271_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04698 PE=4 SV=1
          Length = 323

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 465 IEIAHHLICHRNLYTSPDCVSGLEPFI*IVSTALLQCREDKVDRFSPPRCH 313
           +E AH+L+ +   +       GLEP   +   A      D  +R+ PPRCH
Sbjct: 4   LERAHNLVINGGTFNDFSSSHGLEPLAYLEQYAASGATYDSAERYPPPRCH 54


>tr|Q5CQ19|Q5CQ19_CRYPV Putative uncharacterized protein
           OS=Cryptosporidium parvum Iowa II GN=cgd5_4460 PE=4 SV=1
          Length = 340

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 237 HNRKYSLNASFE*LDKLYKYHKS*CSCTPMADHNVEPYNLDTFSKQT 97
           HN KYSL+  F+ L K+++Y K     + M  H ++ +N  TFS  T
Sbjct: 286 HNNKYSLSIEFQKLPKIFQYIKK--ETSKMTIHKLQFFNNLTFSDCT 330


>tr|Q9J3F8|Q9J3F8_9CORO RNA-directed RNA polymerase OS=Murine
            hepatitis virus strain ML-11 GN=orf1A PE=4 SV=1
          Length = 4416

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>tr|Q9J3F3|Q9J3F3_9CORO RNA-directed RNA polymerase OS=Murine
            hepatitis virus GN=ORF1A PE=4 SV=1
          Length = 4416

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>tr|Q9J3E9|Q9J3E9_9CORO RNA-directed RNA polymerase OS=Murine
            hepatitis virus GN=ORF1A PE=4 SV=1
          Length = 4467

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4424 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4465


>tr|Q66WN5|Q66WN5_9CORO Replicative polyprotein 1a OS=Murine hepatitis
            virus PE=4 SV=1
          Length = 4470

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 159  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4427 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4468