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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913319
Clone id YMU001_000028_H11
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTGATGCCCAAAGTTTGCTGTCTATTTGCAAGTCAAACTTTCAATGGAATGATGAAG
ATTGAAATAAGTTCTCCATACTATGCACCAGACCACTGACTTCTATAATTACTTTCTCCA
TACATTCAATCCAATTCGCTCTGATCTTTCACCGGTAACTGACATTAATCAACAACGTGG
AATGGAGGCAAGGGTCAGGGTAAGCTTTAACGAAATGGCGGAGTATAATCACCTGCTTCC
TTATAGCTGATGTGAGATTTCAGTTACAACATTCAATGAGAAATGTCGCAACGATTAGAG
AGCACTATCCAGCTCCAGACGCACCTTCAGCATTTCCCTGTTTCATCTCTGCAAGGTGAA
TGCATTCACGCTGGAGATCCCCAAGAATTTCTCTTACAATCTTAGCAGTTACCCCTCTCA
CATAACCATTCAGTGGCCACGGCGGCACAATTGCAGGCTCAACAACCTGATTAAATGTTA
TCCACGAGCCT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913319|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_H11.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9RFP1
Definition tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913319|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_H11.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella paten...    83   8e-15
tr|A9TSV5|A9TSV5_PHYPA Predicted protein (Fragment) OS=Physcomit...    78   2e-13
tr|Q38888|Q38888_ARATH OBP32pep (Fragment) OS=Arabidopsis thalia...    48   3e-04
tr|Q9CAL6|Q9CAL6_ARATH Putative uncharacterized protein F24J13.5...    47   4e-04
tr|Q8LCZ0|Q8LCZ0_ARATH Putative uncharacterized protein OS=Arabi...    47   4e-04
tr|A9SIW2|A9SIW2_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A9SJC0|A9SJC0_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|Q6K2P1|Q6K2P1_ORYSJ Putative uncharacterized protein P0706E03...    45   0.002
tr|A3BXI6|A3BXI6_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A7QNY4|A7QNY4_VITVI Chromosome chr1 scaffold_135, whole genom...    44   0.003
tr|A9SYZ5|A9SYZ5_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|Q9ZUD8|Q9ZUD8_ARATH F5O8.12 protein OS=Arabidopsis thaliana G...    38   0.22 
tr|Q9LQC3|Q9LQC3_ARATH F28C11.19 OS=Arabidopsis thaliana PE=4 SV=1     38   0.22 
tr|A9RFQ9|A9RFQ9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|Q8LCB8|Q8LCB8_ARATH Putative uncharacterized protein OS=Arabi...    37   0.64 
tr|A8P0M0|A8P0M0_BRUMA FG-GAP repeat family protein OS=Brugia ma...    35   1.9  

>tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113132 PE=4 SV=1
          Length = 222

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 34/49 (69%), Positives = 43/49 (87%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 344
           GSW+ F QV+EPAIVPPWPLNGYVRGVT +I+RE+L DLQ EC+ L+++
Sbjct: 171 GSWVNFQQVLEPAIVPPWPLNGYVRGVTERIIREMLADLQLECLRLSQV 219


>tr|A9TSV5|A9TSV5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_6718 PE=4 SV=1
          Length = 192

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 344
           GSWITF QVVEP+I PPWPL+ Y+RGV+ KIVRE+L DLQ+EC  L E+
Sbjct: 144 GSWITFQQVVEPSIKPPWPLSNYIRGVSDKIVREMLADLQQECQRLTEL 192


>tr|Q38888|Q38888_ARATH OBP32pep (Fragment) OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 255

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 34/50 (68%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEMK 341
           GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E     +++
Sbjct: 206 GSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAETARSVQLE 255


>tr|Q9CAL6|Q9CAL6_ARATH Putative uncharacterized protein F24J13.5
           (Putative uncharacterized protein At1g70480) (Putative
           uncharacterized protein At1g70480; F24J13.5)
           OS=Arabidopsis thaliana GN=At1g70480/F24J13.5 PE=2 SV=1
          Length = 320

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRE 365
           GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E
Sbjct: 233 GSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAE 274


>tr|Q8LCZ0|Q8LCZ0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 320

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRE 365
           GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E
Sbjct: 233 GSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAE 274


>tr|A9SIW2|A9SIW2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130447 PE=4 SV=1
          Length = 266

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = -2

Query: 487 SWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 344
           S ++  QVV PA+VPP P   YVRG+T +    +L DLQ E   L E+
Sbjct: 167 SIVSLEQVVRPAVVPPPPFKSYVRGITTRTTEMLLQDLQAEGKRLREL 214


>tr|A9SJC0|A9SJC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185602 PE=4 SV=1
          Length = 279

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/47 (48%), Positives = 28/47 (59%)
 Frame = -2

Query: 487 SWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAE 347
           S IT  QVV+PA+VPP P   YVR +T +    +L DLQ E   L E
Sbjct: 181 SIITLQQVVQPAVVPPPPFKNYVRKITTRTTEMLLQDLQAEGKRLRE 227


>tr|Q6K2P1|Q6K2P1_ORYSJ Putative uncharacterized protein P0706E03.11
           OS=Oryza sativa subsp. japonica GN=P0706E03.11 PE=4 SV=1
          Length = 378

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 353
           GS IT +Q++EPA+VPP P + Y+RG+T +    ++ DL  E   L
Sbjct: 279 GSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARL 324


>tr|A3BXI6|A3BXI6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_027758 PE=4 SV=1
          Length = 1199

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -2

Query: 490  GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 353
            GS IT +Q++EPA+VPP P + Y+RG+T +    ++ DL  E   L
Sbjct: 1100 GSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARL 1145


>tr|A7QNY4|A7QNY4_VITVI Chromosome chr1 scaffold_135, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002723001
           PE=4 SV=1
          Length = 323

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = -2

Query: 490 GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 353
           GS ++  Q+++PAIVPP P++ Y+RG+T++    ++ DL  E   +
Sbjct: 230 GSKVSLEQLIQPAIVPPPPISWYLRGITSRTTEMLINDLLAEAARI 275