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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913321
Clone id YMU001_000029_A02
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTCCATGCTATAGATATATCAGGACTTAAAAGTTTGTATACCAAAGAATCTTGAGAACC
TTGTGCTTGTTGCCATAACTCCAACTTTTCAGATTCTTCAAGGGCTAACAGCTGCTTCTC
TACAGCAGAGAGCTGGACTAGAATAGCTTTTGCATCATCATCGTCATTAGGCTGACATTT
CTCCAGGTTCTTGTCCGGCTCAACAAGCATGGTCTCCTCCGTCTCATGTGGAACCTGCAA
ATCTTTCAAATCACATACTCCTTCAATGTGGGTAAAGCTCTTAAACCTCTTCAAAGGCTC
ACAACACTCTTCTTTCAGAGGCAAGCACTTCAAAGCTGTAGTGGTATAGGCAGATCTTAC
AACAGTCTCACCAGCCTCCTCTGCTACATTGACAAATTCATCAATACCGCCAGTCAAAAG
AAAAAGAGGTTTGGTCACAATGGAGCGGGATGGGACCTTCTCCACATTCTCTGCCATATC
CAAGTAATCATCCTCAGCGTATGTCCTCCTTCG
■■Homology search results ■■ -
sp_hit_id Q8TXI4
Definition sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPase OS=Methanopyrus kandleri
Align length 59
Score (bit) 34.7
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913321|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_A02.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPas...    35   0.27 
sp|Q8WYP5|AHTF1_HUMAN AT-hook-containing transcription factor 1 ...    31   3.0  
sp|Q11121|PLB1_TORDE Lysophospholipase OS=Torulaspora delbruecki...    31   3.8  
sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS...    30   5.1  
sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein M...    30   6.7  
sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 OS=Homo sapien...    30   8.7  

>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPase
           OS=Methanopyrus kandleri GN=rad50 PE=3 SV=1
          Length = 876

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = -1

Query: 333 LKCLPLKEECCEPLKRFKSFTHIEGVCDLKDLQVPHETEETMLVEPDKNLEKCQPNDDD 157
           LK + +KE+  E L+R +S    EG C +   ++P E  E +L + +K LE+ Q  ++D
Sbjct: 408 LKEIRVKEK--ELLERIESLREAEGECPVCLRKLPRERAEKLLRDAEKELERLQGREED 464


>sp|Q8WYP5|AHTF1_HUMAN AT-hook-containing transcription factor 1
           OS=Homo sapiens GN=AHCTF1 PE=1 SV=2
          Length = 2275

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
 Frame = -1

Query: 483 LDMAENVEKVPSRSIVTKPLFLLTGGIDEFVNVAEEAGETVVRSAYTTTALKCLPLKEE- 307
           L   E +E + S +I T  L LLTG I  ++   +    T +R     T  K +  KEE 
Sbjct: 548 LSQEEQLEAILSAAIQTSSLGLLTGYIRRWITEEQPNSATNLRFVLEWTWNKVVLTKEEF 607

Query: 306 --CCEPLKRFKSFTHIEGVCDLKDLQVPHETEETMLVEPDKNL 184
              C PL         +G C   D Q     ++  L+  + N+
Sbjct: 608 DRLCVPL--------FDGSCHFMDPQTIQSIQQCYLLLSNLNI 642


>sp|Q11121|PLB1_TORDE Lysophospholipase OS=Torulaspora delbrueckii
           PE=1 SV=1
          Length = 649

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 29  KSLYTKES*EPCACCHNSNFSDSSRANSCFSTAESWTRIAFASS 160
           + +YT+E+         SNFSDSS  +  FS A    RIA A S
Sbjct: 59  RDVYTREALRSFLDRATSNFSDSSLVSQLFSNASDIPRIAVACS 102


>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2
           OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1
          Length = 735

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 507 RTYAEDDYLDMAENVEKVPSRSIVTKPLFLLTG-GIDEFVN 388
           R Y E DY+ + +  E   +RS VT P+ +L   G+D+ +N
Sbjct: 422 RLYCESDYVKLPKQSEPEIARSDVTSPVLMLKRYGVDDLLN 462


>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2
            homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2
          Length = 1982

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = -1

Query: 411  GGIDEFVNVAEEAGETVVRSAYTTTALKCLPLKEECCEPLKRFKSFTHI---EGVCDLKD 241
            G + +   V E AG+T    A   T +     KEE  +P  + +  T     E V D K 
Sbjct: 1605 GDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKEETKDPEVKEEPKTEEKEKEKVDDKKP 1664

Query: 240  LQ----VPHETEETMLVEPDKNLEKCQPNDDDDAKAILVQLSA 124
            +     +  + ++ M+V+ D  LEK   +   D KA+    SA
Sbjct: 1665 IPPTTVIDDDDDDVMIVKEDGELEKPSASSPKDQKAVAAATSA 1707


>sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 OS=Homo sapiens
           GN=GOLGA4 PE=1 SV=1
          Length = 2230

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 300 EPLKRFKSFTHIEGVCDLKDLQVPHETEETMLVEPDKNLEKCQPNDDDDAKAILVQLSA 124
           E L+  K     E    L+DLQ   ET  T ++E + +LEK    + + +K + V L A
Sbjct: 538 EELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEA 596
tr_hit_id Q5DMW7
Definition tr|Q5DMW7|Q5DMW7_CUCME Protein disulfide isomerase (PDI)-like protein 1 OS=Cucumis melo
Align length 44
Score (bit) 36.2
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913321|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_A02.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5DMW7|Q5DMW7_CUCME Protein disulfide isomerase (PDI)-like pr...    36   0.98 
tr|Q22CF8|Q22CF8_TETTH Putative uncharacterized protein OS=Tetra...    36   0.98 
tr|O94182|O94182_PNECA Major surface glycoprotein-related protei...    36   0.98 
tr|Q9UVY1|Q9UVY1_PNECA Major surface glycoprotein 110 (Fragment)...    36   1.3  
tr|A7Q2J0|A7Q2J0_VITVI Chromosome chr1 scaffold_46, whole genome...    35   2.9  
tr|O94170|O94170_PNECA Variant 1 major surface glycoprotein OS=P...    35   2.9  
tr|Q29H75|Q29H75_DROPS GA13681 OS=Drosophila pseudoobscura pseud...    34   3.7  
tr|Q9Z933|Q9Z933_CHLPN Putative uncharacterized protein OS=Chlam...    34   4.9  
tr|Q9K229|Q9K229_CHLPN Putative uncharacterized protein OS=Chlam...    34   4.9  
tr|Q9JSI7|Q9JSI7_CHLPN Putative uncharacterized protein CPj0150 ...    34   4.9  
tr|B0X089|B0X089_CULQU Set domain protein OS=Culex quinquefascia...    33   8.1  
tr|Q871I3|Q871I3_NEUCR Putative uncharacterized protein B16M17.0...    33   8.1  
tr|Q7S7H8|Q7S7H8_NEUCR Putative uncharacterized protein OS=Neuro...    33   8.1  
tr|Q4GZF5|Q4GZF5_9TRYP Putative uncharacterized protein OS=Trypa...    33   8.3  
tr|Q22PC7|Q22PC7_TETTH Hypothetical repeat containing protein OS...    33   8.3  

>tr|Q5DMW7|Q5DMW7_CUCME Protein disulfide isomerase (PDI)-like
           protein 1 OS=Cucumis melo GN=PDI1 PE=4 SV=1
          Length = 341

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 396 FVNVAEEAGETVVRSAYTTTALKCLPLKEECCEPLKRFKSFTHI 265
           F+++ EE  E + + A+ T     LP K+E C+ LK +   THI
Sbjct: 239 FISLDEEEDENLFKEAFKTMPWLALPFKDERCQELKLYFEVTHI 282


>tr|Q22CF8|Q22CF8_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01044610 PE=4
           SV=2
          Length = 690

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 501 YAEDDYLDMAENVEKVPSRSIVTKPLFLLTGGIDEFVNV 385
           Y EDD   +   + + PS+S+    LFLLTGG+D+ + V
Sbjct: 370 YNEDDLQYLQNQISENPSKSLSNLGLFLLTGGLDKIIKV 408


>tr|O94182|O94182_PNECA Major surface glycoprotein-related protein 1
           OS=Pneumocystis carinii GN=msr1 PE=4 SV=1
          Length = 781

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 393 VNVAEEAGETVVRSAYTTTALKCLPLKEECCEPLKRFKSFTHIEGVC-DLKDLQVPHETE 217
           +N  +++ ET+V+   TT    C  L E C + LK+  +  + +GVC  LK+   P   E
Sbjct: 659 LNKTKDSNETLVKKFCTTWGSYCRQLMENCPDTLKKGSNSHNEKGVCLQLKENCKPFWVE 718

Query: 216 ETMLVEPDKNLEK 178
           + +  +P K  EK
Sbjct: 719 KKVEDKPAKEEEK 731


>tr|Q9UVY1|Q9UVY1_PNECA Major surface glycoprotein 110 (Fragment)
           OS=Pneumocystis carinii GN=msg110 PE=4 SV=1
          Length = 765

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = -1

Query: 393 VNVAEEAGETVVRSAYTTTALKCLPLKEECCEPLKRFKSFTHIEGVC-----DLKDLQVP 229
           +N  +++ ET+V+   TT    C  L E C + LK+  +  + +GVC     + K   V 
Sbjct: 632 LNKTKDSNETLVKKLCTTWGSYCRQLMENCPDTLKKGSNSHNEKGVCLQLKDNCKSFWVE 691

Query: 228 HETEETMLVEPDKNLEKCQPNDDDDAK 148
            + E+    E  K +E  +P+ +D  K
Sbjct: 692 KKVEDKPSKEDGKKVED-KPSKEDGKK 717


>tr|A7Q2J0|A7Q2J0_VITVI Chromosome chr1 scaffold_46, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00028904001
            PE=4 SV=1
          Length = 1277

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
 Frame = -1

Query: 492  DDYLDMAENVEKVPSRSIVTKPLFLLTGG------IDEFVNVAEEAGETVVRSAYTTTAL 331
            DDY+    NV+ V + +++       TGG      +DEF+    E    VV SA    A 
Sbjct: 661  DDYVARERNVDGVSNSNVIAVQRIGTTGGRPPSIHVDEFMARQRERQNPVV-SAVGEVAA 719

Query: 330  KCLPLKEECCEPLKRFKSFTHIEGVC--DLKDLQVPHETEETMLVEPDKNLEKCQPNDD- 160
            +      E    +++F     I+     DL+ + +  + EE+   EPD+ L   QP+D+ 
Sbjct: 720  QAKNAAPENDADMEKFNKSRQIKADLDDDLQGIDIVFDGEES---EPDEKLPFPQPDDNL 776

Query: 159  DDAKAILVQLSA 124
                +++V+ S+
Sbjct: 777  QQPASVIVEQSS 788


>tr|O94170|O94170_PNECA Variant 1 major surface glycoprotein
           OS=Pneumocystis carinii PE=2 SV=1
          Length = 774

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = -1

Query: 399 EFVNVAEEAGETVVRSAYTTTALKCLPLKEECCEPLKRFKSFTHIEGVC-----DLKDLQ 235
           + ++  +++ +T+V+    T  L C  L E C + LK+  +  + +GVC     + K   
Sbjct: 650 KILDKTKDSNQTLVKELCATWGLYCRQLMENCPDTLKKGSNSHNEKGVCLQLKDNCKSFW 709

Query: 234 VPHETEETMLVEPDKNLEKCQPNDDDDAK 148
           V  + E+    E +K LE  +P  +++ K
Sbjct: 710 VEKKVEDKPAKEEEKKLED-KPAKEEEKK 737


>tr|Q29H75|Q29H75_DROPS GA13681 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA13681 PE=4 SV=2
          Length = 1165

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -1

Query: 321 PLKEECCE---PLKRFKSFTHIEGVCDLKDLQVPHETEETMLVEPDKNLEKCQPNDDDDA 151
           PL +E  +   P     +F +  G+  ++D Q+P+E EE    +P   L+  + +DD+D 
Sbjct: 798 PLSQELVDVLQPAAAAAAFAYYTGISFVRDSQLPNEAEEEARKQPSDGLDSSE-DDDEDV 856

Query: 150 KAIL 139
            ++L
Sbjct: 857 DSLL 860


>tr|Q9Z933|Q9Z933_CHLPN Putative uncharacterized protein
           OS=Chlamydia pneumoniae GN=CPn_0150 PE=4 SV=1
          Length = 1537

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 223 LMWNLQIFQITYSFNVGKALKPLQRLTTLFFQRQALQSCSGIGRSYNSLTSLLCYIDKFI 402
           + WN Q+  I  S+ + +  + L     +F    AL +  G G++   L SLLCY D+ I
Sbjct: 313 IAWNPQLPAIAQSYLLEQQ-RHLDYAAKIFQDLSALTTAHGTGQALEDLDSLLCYYDQLI 371

Query: 403 NTASQKKK 426
            +    +K
Sbjct: 372 ESKGVGEK 379


>tr|Q9K229|Q9K229_CHLPN Putative uncharacterized protein
           OS=Chlamydia pneumoniae GN=CP_0623 PE=4 SV=1
          Length = 1537

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 223 LMWNLQIFQITYSFNVGKALKPLQRLTTLFFQRQALQSCSGIGRSYNSLTSLLCYIDKFI 402
           + WN Q+  I  S+ + +  + L     +F    AL +  G G++   L SLLCY D+ I
Sbjct: 313 IAWNPQLPAIAQSYLLEQQ-RHLDYAAKIFQDLSALTTAHGTGQALEDLDSLLCYYDQLI 371

Query: 403 NTASQKKK 426
            +    +K
Sbjct: 372 ESKGVGEK 379


>tr|Q9JSI7|Q9JSI7_CHLPN Putative uncharacterized protein CPj0150
           (Putative uncharacterized protein) OS=Chlamydia
           pneumoniae GN=CPj0150 PE=4 SV=1
          Length = 1537

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 223 LMWNLQIFQITYSFNVGKALKPLQRLTTLFFQRQALQSCSGIGRSYNSLTSLLCYIDKFI 402
           + WN Q+  I  S+ + +  + L     +F    AL +  G G++   L SLLCY D+ I
Sbjct: 313 IAWNPQLPAIAQSYLLEQQ-RHLDYAAKIFQDLSALTTAHGTGQALEDLDSLLCYYDQLI 371

Query: 403 NTASQKKK 426
            +    +K
Sbjct: 372 ESKGVGEK 379