BP913333 |
Clone id |
YMU001_000029_B02 |
Library |
YMU01 |
Length |
527 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000029_B02. |
Accession |
BP913333 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL743Contig1 |
Sequence |
CGGTTCAGGAGAGCCCATGTGCGGCCACTCCCAATTTTCCCATCAGGAGAAAGATTGGGG GCTCAACCTAGCATCATCCAACACAGGATCATCATTACCCTCTTACATGGTCTCAGCGTC TGGTGAAGCTAGAGGAGGAGGCAGTAGATTTAAGTCTAGGGCTTTGGAGTTGCCGTCCGT TTCTACAGCGGGAGCTGCAGCAGCCATGAGAGATGTTTACAATCGGACCAAGGTCGTTGT GAGGCACCTACCACCAGGCTTGTCAGAATCTGCTTTTATGGAGCAAATTGCATCGCGGTT TTCTTCCATGTACAACATGGTTTCCTTTTGTCCTGGTAAATCCAGTATCAAAGGTAGCAG TTTTTCACGAGCTTACATCGATTTCAAGCACCCAGAGGATGTTCTTGACTTCTACCAGGG TTTCAATGGGCATGTCTGTGTGAATGAGAAAGGGACCCAATTTAAAGCTTTAGTTGAGTA TGCCCCTAATCAACGAGTGCCAAAGTTGTGGATTAAAAAGGATCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9H1J1 |
Definition |
sp|Q9H1J1|REN3A_HUMAN Regulator of nonsense transcripts 3A OS=Homo sapiens |
Align length |
98 |
Score (bit) |
72.8 |
E-value |
1.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QGI3 |
Definition |
tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
106 |
Score (bit) |
144.0 |
E-value |
3.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913333|Adiantum capillus-veneris mRNA, clone: YMU001_000029_B02. (527 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whol... 144 3e-33 tr|A5BSM7|A5BSM7_VITVI Putative uncharacterized protein OS=Vitis... 144 3e-33 tr|A7QC83|A7QC83_VITVI Chromosome undetermined scaffold_77, whol... 142 8e-33 tr|A7QGI8|A7QGI8_VITVI Chromosome undetermined scaffold_92, whol... 137 3e-31 tr|A5AQH0|A5AQH0_VITVI Putative uncharacterized protein OS=Vitis... 137 3e-31 tr|Q9FX10|Q9FX10_ARATH F12G12.20 protein OS=Arabidopsis thaliana... 135 1e-30 tr|Q9FVW4|Q9FVW4_ARATH Putative uncharacterized protein T15K4.3 ... 135 1e-30 tr|A9TJU8|A9TJU8_PHYPA Predicted protein OS=Physcomitrella paten... 130 4e-29 tr|B3H5N7|B3H5N7_ARATH Uncharacterized protein At1g33980.2 OS=Ar... 130 5e-29 tr|Q01K74|Q01K74_ORYSA H0525C06.10 protein OS=Oryza sativa GN=H0... 125 2e-27 tr|B8AU35|B8AU35_ORYSI Putative uncharacterized protein OS=Oryza... 125 2e-27 tr|A3AU56|A3AU56_ORYSJ Putative uncharacterized protein OS=Oryza... 125 2e-27 tr|Q7XQG3|Q7XQG3_ORYSJ OJ000114_01.14 protein OS=Oryza sativa su... 122 1e-26 tr|Q0JD00|Q0JD00_ORYSJ Os04g0440100 protein OS=Oryza sativa subs... 122 1e-26 tr|Q1SL19|Q1SL19_MEDTR Nonsense-mediated decay UPF3 OS=Medicago ... 103 5e-21 tr|A9RK13|A9RK13_PHYPA Predicted protein OS=Physcomitrella paten... 98 2e-19 tr|A8ILB6|A8ILB6_CHLRE UPF3 protein OS=Chlamydomonas reinhardtii... 93 7e-18 tr|B7Q7R2|B7Q7R2_IXOSC Regulator of nonsense transcripts 3B, put... 84 3e-15 tr|Q4VBI8|Q4VBI8_DANRE Upf3a protein (Fragment) OS=Danio rerio G... 81 4e-14 tr|B0S733|B0S733_DANRE Novel protein similar to vertebrate UPF3 ... 81 4e-14 tr|B3MCL9|B3MCL9_DROAN GF12056 OS=Drosophila ananassae GN=GF1205... 75 3e-12 tr|Q9CUH6|Q9CUH6_MOUSE Putative uncharacterized protein (Fragmen... 74 3e-12 tr|Q8CCF7|Q8CCF7_MOUSE Putative uncharacterized protein OS=Mus m... 74 3e-12 tr|Q3ULJ3|Q3ULJ3_MOUSE Putative uncharacterized protein OS=Mus m... 74 3e-12 tr|Q2F5U6|Q2F5U6_BOMMO Upf3 regulator of nonsense transcripts-li... 74 3e-12 tr|Q4RWE6|Q4RWE6_TETNG Chromosome 2 SCAF14990, whole genome shot... 74 5e-12 tr|Q4R3M2|Q4R3M2_MACFA Testis cDNA clone: QtsA-15960, similar to... 74 5e-12 tr|Q5I0C8|Q5I0C8_RAT UPF3 regulator of nonsense transcripts homo... 73 8e-12 tr|A7SEE5|A7SEE5_NEMVE Predicted protein (Fragment) OS=Nematoste... 70 5e-11 tr|Q9CTQ4|Q9CTQ4_MOUSE Putative uncharacterized protein (Fragmen... 70 7e-11
>tr|A7QGI3|A7QGI3_VITVI Chromosome undetermined scaffold_92, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038330001 PE=4 SV=1 Length = 357
Score = 144 bits (363), Expect = 3e-33 Identities = 66/106 (62%), Positives = 85/106 (80%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M+ +RTKV+VRHLPP +SE+AF+EQI + F Y +V FCPGK+S + S+SRAY+DF Sbjct: 1 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV++F + F+GHV VNEKGTQFK +VEYAP+QR+PK W KKD Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKD 106
>tr|A5BSM7|A5BSM7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042717 PE=4 SV=1 Length = 437
Score = 144 bits (363), Expect = 3e-33 Identities = 66/106 (62%), Positives = 85/106 (80%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M+ +RTKV+VRHLPP +SE+AF+EQI + F Y +V FCPGK+S + S+SRAY+DF Sbjct: 76 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 135
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV++F + F+GHV VNEKGTQFK +VEYAP+QR+PK W KKD Sbjct: 136 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKD 181
>tr|A7QC83|A7QC83_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035287001 PE=4 SV=1 Length = 519
Score = 142 bits (359), Expect = 8e-33 Identities = 67/106 (63%), Positives = 84/106 (79%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M+ +RTKVVVRHLPP +SE+AF+EQI + F Y +V F PGK+S K S+SRAY+DF Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV++F + F+GHV VNEKGTQFK +VEYAP+QR+PK W KKD Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKD 106
>tr|A7QGI8|A7QGI8_VITVI Chromosome undetermined scaffold_92, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038335001 PE=4 SV=1 Length = 347
Score = 137 bits (345), Expect = 3e-31 Identities = 64/106 (60%), Positives = 83/106 (78%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M+ +RTKV+VRHLPP + E+AF+EQI + F Y +V F PGK+S + S+SRAY+DF Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV++F + F+GHV VNEKGTQFK +VEYAP+QR+PK W KKD Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKD 106
>tr|A5AQH0|A5AQH0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035617 PE=4 SV=1 Length = 355
Score = 137 bits (345), Expect = 3e-31 Identities = 64/106 (60%), Positives = 83/106 (78%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M+ +RTKV+VRHLPP + E+AF+EQI + F Y +V F PGK+S + S+SRAY+DF Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV++F + F+GHV VNEKGTQFK +VEYAP+QR+PK W KKD Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKD 106
>tr|Q9FX10|Q9FX10_ARATH F12G12.20 protein OS=Arabidopsis thaliana GN=F12G12.20 PE=4 SV=1 Length = 525
Score = 135 bits (341), Expect = 1e-30 Identities = 67/107 (62%), Positives = 78/107 (72%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M++ + KVVVRHLPP LS+S + QI RF+ YN VSF PGKSS K +SRAY+ F Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKDP 526 K PEDV +F FNGHV VNEKG QFKA+VEYAP+QRVPK KKDP Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDP 107
>tr|Q9FVW4|Q9FVW4_ARATH Putative uncharacterized protein T15K4.3 (Putative uncharacterized protein At1g33980) OS=Arabidopsis thaliana GN=At1g33980 PE=2 SV=1 Length = 482
Score = 135 bits (341), Expect = 1e-30 Identities = 67/107 (62%), Positives = 78/107 (72%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M++ + KVVVRHLPP LS+S + QI RF+ YN VSF PGKSS K +SRAY+ F Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKDP 526 K PEDV +F FNGHV VNEKG QFKA+VEYAP+QRVPK KKDP Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDP 107
>tr|A9TJU8|A9TJU8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170493 PE=4 SV=1 Length = 1124
Score = 130 bits (327), Expect = 4e-29 Identities = 64/106 (60%), Positives = 79/106 (74%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFSRAYIDF 385 M++ RTKV VRHLPP L+ + F +QIA +++ Y S+ PGKSS K +SRAYI+F Sbjct: 26 MKEQQARTKVSVRHLPPSLAWAVFQDQIAVKYAGTYTWWSYHPGKSSHKRQVYSRAYINF 85
Query: 386 KHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 K PEDV+DFY+ FNGHV VNE+G Q+KALVEYAP QRVPK KKD Sbjct: 86 KKPEDVIDFYEDFNGHVFVNERGAQYKALVEYAPYQRVPKPRSKKD 131
>tr|B3H5N7|B3H5N7_ARATH Uncharacterized protein At1g33980.2 OS=Arabidopsis thaliana GN=At1g33980 PE=4 SV=1 Length = 484
Score = 130 bits (326), Expect = 5e-29 Identities = 66/109 (60%), Positives = 78/109 (71%), Gaps = 2/109 (1%) Frame = +2
Query: 206 MRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSI--KGSSFSRAYI 379 M++ + KVVVRHLPP LS+S + QI RF+ YN VSF PGKS + K +SRAY+ Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 380 DFKHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKDP 526 FK PEDV +F FNGHV VNEKG QFKA+VEYAP+QRVPK KKDP Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDP 109
>tr|Q01K74|Q01K74_ORYSA H0525C06.10 protein OS=Oryza sativa GN=H0525C06.10 PE=4 SV=1 Length = 507
Score = 125 bits (313), Expect = 2e-27 Identities = 61/112 (54%), Positives = 81/112 (72%) Frame = +2
Query: 188 AGAAAAMRDVYNRTKVVVRHLPPGLSESAFMEQIASRFSSMYNMVSFCPGKSSIKGSSFS 367 A A A ++D +RTKVV+R LPP +++ A +EQ+ +RF Y+ F PG +S K +S Sbjct: 2 AAARAHVKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYS 61
Query: 368 RAYIDFKHPEDVLDFYQGFNGHVCVNEKGTQFKALVEYAPNQRVPKLWIKKD 523 R Y++FK PEDV++F + FNGHV VNEKG QFKALVEYAP+Q+VPK KKD Sbjct: 62 RLYLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKD 113
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