BP913334
Clone id YMU001_000029_B03
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTTCGCCGTCCCGCCAACCAATCCTCT
CCAAATGTTCCTCTTGGAGCTCCTATTGCAGCCATTGTCCTCTGCAGTTATTGGCCAAGG
TTCTGCCTATATACATTGAGTAGTTGCGACCCCTCGACAATTGGCTATATCCCCCATATC
CATCGAGCTGATGCGAGCCCTCTCCGATTGGATATTCCCTCCATTGTTTGACTCGGTAGC
TGCTGCAGGTTGAACCAGTCGAGGCCTTTATCAAGCGTCTACAACCCATCCCTTGGTCGA
GCTTGCACCTACCTCCAACTGTAGGCTATGGAATTCTTGCTCGCTAATAGCTGCAAGTTG
AAAGGACCTCCATGGGTGCTTGCTTGCCATCATCT
■■Homology search results ■■ -
sp_hit_id A2XMN1
Definition sp|A2XMN1|PCF6_ORYSI Transcription factor PCF6 OS=Oryza sativa subsp. indica
Align length 25
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913334|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_B03.
(395 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A2XMN1|PCF6_ORYSI Transcription factor PCF6 OS=Oryza sativa s... 29 6.4
sp|Q1LPG5|MUTS_RALME DNA mismatch repair protein mutS OS=Ralston... 29 8.3
sp|Q0KCC0|MUTS_RALEH DNA mismatch repair protein mutS OS=Ralston... 29 8.3

>sp|A2XMN1|PCF6_ORYSI Transcription factor PCF6 OS=Oryza sativa
subsp. indica GN=PCF6 PE=4 SV=1
Length = 358

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1

Query: 133 TLSSCDPSTIGYIPHIHRADASPLR 207
TL S DP+ IPH ADA+P R
Sbjct: 109 TLPSLDPAAFAAIPHAAAADAAPTR 133


>sp|Q1LPG5|MUTS_RALME DNA mismatch repair protein mutS OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=mutS PE=3 SV=1
Length = 916

Score = 28.9 bits (63), Expect = 8.3
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 205 RLDIPSIV*LGSCCRLNQSRPLSSVYNPSLGRACTYLQL*AMEFLLA 345
+L S+ + + C+LN++R L + P++G T+++ A+ LLA
Sbjct: 630 QLAAESVAFIANDCQLNEARKLLLITGPNMGGKSTFMRQTALIVLLA 676


>sp|Q0KCC0|MUTS_RALEH DNA mismatch repair protein mutS OS=Ralstonia
eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
337) GN=mutS PE=3 SV=1
Length = 899

Score = 28.9 bits (63), Expect = 8.3
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1

Query: 205 RLDIPSIV*LGSCCRLNQSRPLSSVYNPSLGRACTYLQL*AMEFLLA 345
+L S+ + + C+LN++R L + P++G T+++ A+ LLA
Sbjct: 605 QLAAESVAFIANDCQLNEARKLLLITGPNMGGKSTFMRQTALIVLLA 651


tr_hit_id Q82MZ7
Definition tr|Q82MZ7|Q82MZ7_STRAW Putative uncharacterized protein OS=Streptomyces avermitilis
Align length 62
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913334|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_B03.
(395 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q82MZ7|Q82MZ7_STRAW Putative uncharacterized protein OS=Strep... 34 3.2
tr|B3BQA1|B3BQA1_ECO57 HnhC OS=Escherichia coli O157:H7 str. EC8... 33 7.1

>tr|Q82MZ7|Q82MZ7_STRAW Putative uncharacterized protein
OS=Streptomyces avermitilis GN=SAV1506 PE=4 SV=1
Length = 154

Score = 34.3 bits (77), Expect = 3.2
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2

Query: 104 AVIGQGSAYIH*VVATPRQLAISPISIELMRALSDWIFPPLFDSVAAAG*TSRGLYQAST 283
AV+ +G ++ V A P P+S++ + AL+DWI PLF++ S +AS+
Sbjct: 35 AVLAEGGVFVEDVRAQP------PLSLDDLTALADWIEGPLFEACGGEPGPSGEPEEASS 88

Query: 284 TH 289
H
Sbjct: 89 RH 90


>tr|B3BQA1|B3BQA1_ECO57 HnhC OS=Escherichia coli O157:H7 str. EC869
GN=ECH7EC869_5537 PE=4 SV=1
Length = 149

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2

Query: 286 GCRRLIKASTGSTCSSYRVKQWREYPIGEGSHQLDGYGGYSQLSRGR 146
GCR +G C S++ + W++Y G+ HQ GYG + RGR
Sbjct: 46 GCRHTTTDPSGY-CESHKSEGWKQYKPGQSRHQ-RGYGSKWDVIRGR 90