BP913337
Clone id YMU001_000029_B06
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACTCCATTTCCAATCTCTCCAAGGATCCGGGAACAACCATGTCGTCAATACGATAATCTC
GCTGGCCATTGGATGACACAGAACTTGGAGATCCAGAGTCAGATCTCAAGGTATGGTGAG
CGTGTAAGAACCTGCAATTGGATCCATGTTTACAATAGCCTCTGCTGTAGTAGAGGCAAG
GCTTCCATGCAGGAGAGAGACAGGTGCTATCTGGAGACAATGGGAAATCGGAGAGAGATG
ATGGTCTTCGAGCTGTAACTGACAGGGGTCGGGAGAAAAAGTTAGGACCTGCTTCAGCAT
GAAACTTATCCACAAGGAGATTGGAAATCACATCTGGTGGCGGAGGATATGCATCATCAA
AACCATTGCTGTAGTGGGGATGATGGTGATGATGCTGTTGGTGATGTAGAGGAGTTACTG
GGGCAGAATTGGATGGTTGAAGAGAATCCTCTCCATAGTAAGGAAAAGGATCTGGAGGGA
G
■■Homology search results ■■ -
sp_hit_id Q0D3J9
Definition sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica
Align length 22
Score (bit) 51.2
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913337|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_B06.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein... 51 2e-06
sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein... 51 3e-06
sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein... 50 4e-06
sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein... 43 7e-04
sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein... 38 0.028
sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida gl... 36 0.080
sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein ... 35 0.18
sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity f... 35 0.23
sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity f... 35 0.23
sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity fac... 35 0.23
sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity f... 35 0.23
sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity f... 35 0.23
sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein... 34 0.30
sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia l... 34 0.30
sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwc2 OS=Schizosacc... 34 0.30
sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein ... 34 0.30
sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containin... 34 0.30
sp|Q9QXP6|MKRN1_MOUSE Makorin-1 OS=Mus musculus GN=Mkrn1 PE=2 SV=1 34 0.40
sp|Q4PA86|CWC2_USTMA Pre-mRNA-splicing factor CWC2 OS=Ustilago m... 34 0.40
sp|Q51TF7|CWC2_MAGGR Pre-mRNA-splicing factor CWC2 OS=Magnaporth... 33 0.52
sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromy... 33 0.52
sp|Q9ERV1|MKRN2_MOUSE Makorin-2 OS=Mus musculus GN=Mkrn2 PE=2 SV=1 33 0.68
sp|Q9H000|MKRN2_HUMAN Makorin-2 OS=Homo sapiens GN=MKRN2 PE=2 SV=2 33 0.68
sp|Q9UHC7|MKRN1_HUMAN Makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3 33 0.68
sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphae... 33 0.68
sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella... 33 0.68
sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Aspergillu... 33 0.68
sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.68
sp|Q60764|MKRN3_MOUSE Makorin-3 OS=Mus musculus GN=Mkrn3 PE=2 SV=1 33 0.89
sp|Q13064|MKRN3_HUMAN Makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 33 0.89

>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53
OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2
SV=1
Length = 682

Score = 51.2 bits (121), Expect = 2e-06
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RGYCK+GS CRF+H
Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253


>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22
OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2
SV=2
Length = 688

Score = 50.8 bits (120), Expect = 3e-06
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RG+CK+GS+CRF+H
Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257


>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23
OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2
SV=1
Length = 677

Score = 50.4 bits (119), Expect = 4e-06
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RG+CK+GS CRF+H
Sbjct: 231 WKPCLYYARGFCKNGSTCRFVH 252


>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54
OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2
SV=2
Length = 653

Score = 43.1 bits (100), Expect = 7e-04
Identities = 24/61 (39%), Positives = 31/61 (50%)
Frame = -1

Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERLEM 5
+PC Y+S+G CK+G NC + +HH + NG V PGSLE LEM
Sbjct: 264 RPCHYFSKGICKNGQNCHY--SHH--QVYQDALAGAAINGDVYNHQPGGVTPGSLETLEM 319

Query: 4 E 2
E
Sbjct: 320 E 320


>sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62
OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2
SV=2
Length = 702

Score = 37.7 bits (86), Expect = 0.028
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -1

Query: 187 WKPC-LYYSRGYCKHGSNCRFLH 122
WKPC +Y +G+C +G NC+F+H
Sbjct: 677 WKPCFIYQQQGWCPYGENCKFMH 699


>sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida
glabrata GN=CWC2 PE=3 SV=1
Length = 306

Score = 36.2 bits (82), Expect = 0.080
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1

Query: 196 SPAWKPCLYYSRGYCKHGSNCRFLH 122
S WK CLY++RG C G C +LH
Sbjct: 64 SGTWKFCLYFARGLCALGHKCEYLH 88


>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5
OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2
SV=1
Length = 466

Score = 35.0 bits (79), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1

Query: 199 LSPAWKPCLYYSR-GYCKHGSNCRFLHAHHTL 107
L P +PC YY++ G+CK G C+F H TL
Sbjct: 344 LRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTL 375



Score = 30.4 bits (67), Expect = 4.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1

Query: 184 KPCLYYSR-GYCKHGSNCRFLH 122
K C YY + G+CK GS C+F H
Sbjct: 149 KDCTYYVKTGHCKFGSTCKFHH 170



Score = 29.3 bits (64), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1

Query: 193 PAWKPCLYYSR-GYCKHGSNCRFLH 122
P C+YY R G C +G NCR+ H
Sbjct: 52 PGEADCVYYLRTGACGYGENCRYNH 76


>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity
factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2
SV=1
Length = 269

Score = 34.7 bits (78), Expect = 0.23
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1

Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107
K C +Y RG+CKHG CR H +
Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147



Score = 30.0 bits (66), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1

Query: 178 CLYYSRGYCKHGSNCRFLHAH 116
C ++ RG CK G C FLH +
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88



Score = 29.3 bits (64), Expect = 9.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1

Query: 178 CLYYSRGYCKHGSNCRFLHAHHTL 107
C+ Y G+C G NC+F+H L
Sbjct: 148 CVNYLVGFCIEGPNCKFMHPRFEL 171


>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity
factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269

Score = 34.7 bits (78), Expect = 0.23
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1

Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107
K C +Y RG+CKHG CR H +
Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147



Score = 30.0 bits (66), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1

Query: 178 CLYYSRGYCKHGSNCRFLHAH 116
C ++ RG CK G C FLH +
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88



Score = 29.3 bits (64), Expect = 9.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1

Query: 178 CLYYSRGYCKHGSNCRFLHAHHTL 107
C+ Y G+C G NC+F+H L
Sbjct: 148 CVNYLVGFCIEGPNCKFMHPRFEL 171


>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor
subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243

Score = 34.7 bits (78), Expect = 0.23
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1

Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107
K C +Y RG+CKHG CR H +
Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147



Score = 30.0 bits (66), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1

Query: 178 CLYYSRGYCKHGSNCRFLHAH 116
C ++ RG CK G C FLH +
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88


tr_hit_id A9RVK1
Definition tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 68.9
E-value 1.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913337|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_B06.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella paten... 69 1e-10
tr|A9SY40|A9SY40_PHYPA Predicted protein OS=Physcomitrella paten... 65 2e-09
tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x Po... 52 2e-05
tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequen... 51 2e-05
tr|B6UER2|B6UER2_MAIZE Nucleic acid binding protein OS=Zea mays ... 51 2e-05
tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza... 51 2e-05
tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza... 51 2e-05
tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza... 51 3e-05
tr|B7ETE2|B7ETE2_ORYSJ cDNA clone:J033099F01, full insert sequen... 51 3e-05
tr|A3AHK0|A3AHK0_ORYSJ Putative uncharacterized protein OS=Oryza... 51 3e-05
tr|B8AP12|B8AP12_ORYSI Putative uncharacterized protein OS=Oryza... 50 4e-05
tr|A3AHK1|A3AHK1_ORYSJ Putative uncharacterized protein OS=Oryza... 50 4e-05
tr|B6UEB5|B6UEB5_MAIZE Nucleic acid binding protein OS=Zea mays ... 50 6e-05
tr|A7PQV9|A7PQV9_VITVI Chromosome chr6 scaffold_25, whole genome... 48 3e-04
tr|A5C749|A5C749_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A7P0E3|A7P0E3_VITVI Chromosome chr19 scaffold_4, whole genome... 47 6e-04
tr|A5CBS7|A5CBS7_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
tr|Q9SJ41|Q9SJ41_ARATH Putative uncharacterized protein At2g0516... 43 0.007
tr|B7F483|B7F483_ORYSJ cDNA clone:J013094C18, full insert sequen... 43 0.007
tr|A2YQU0|A2YQU0_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.007
tr|Q94CJ8|Q94CJ8_ARATH Putative uncharacterized protein At5g1244... 41 0.026
tr|Q8GS07|Q8GS07_ARATH Putative uncharacterized protein At5g1244... 41 0.026
tr|A9TCL0|A9TCL0_PHYPA Predicted protein (Fragment) OS=Physcomit... 40 0.044
tr|Q9SV09|Q9SV09_ARATH Putative uncharacterized protein F4F15.60... 40 0.057
tr|Q8RXK0|Q8RXK0_ARATH Putative uncharacterized protein At3g5195... 40 0.057
tr|Q8L9E0|Q8L9E0_ARATH Putative uncharacterized protein OS=Arabi... 40 0.057
tr|A7Q340|A7Q340_VITVI Chromosome chr12 scaffold_47, whole genom... 39 0.098
tr|A9TYM9|A9TYM9_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.17
tr|A7Q1Y9|A7Q1Y9_VITVI Chromosome chr13 scaffold_45, whole genom... 39 0.17
tr|Q5CYT2|Q5CYT2_CRYPV 3CCCH domain containing protein (Fragment... 39 0.17

>tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_119974 PE=4 SV=1
Length = 421

Score = 68.9 bits (167), Expect = 1e-10
Identities = 33/63 (52%), Positives = 40/63 (63%)
Frame = -1

Query: 190 AWKPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERL 11
AWKPCLY++RGYCKHGS+CR SNG R+ R+DD + PGSLERL
Sbjct: 192 AWKPCLYFARGYCKHGSSCR---------------SPASSNGHRELRVDDGMAPGSLERL 236

Query: 10 EME 2
E+E
Sbjct: 237 EIE 239


>tr|A9SY40|A9SY40_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_137259 PE=4 SV=1
Length = 386

Score = 65.1 bits (157), Expect = 2e-09
Identities = 31/63 (49%), Positives = 37/63 (58%)
Frame = -1

Query: 190 AWKPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERL 11
AWKPCLY++RGYCKHGS+CRFLH +DD + PGSLERL
Sbjct: 165 AWKPCLYFARGYCKHGSSCRFLHG-----------------------MDDGMAPGSLERL 201

Query: 10 EME 2
E+E
Sbjct: 202 EIE 204


>tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x
Populus alba PE=2 SV=1
Length = 705

Score = 51.6 bits (122), Expect = 2e-05
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
W+PCLY++RGYCK+GSNCRF+H
Sbjct: 233 WRPCLYFARGYCKNGSNCRFVH 254


>tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 682

Score = 51.2 bits (121), Expect = 2e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RGYCK+GS CRF+H
Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253


>tr|B6UER2|B6UER2_MAIZE Nucleic acid binding protein OS=Zea mays
PE=2 SV=1
Length = 653

Score = 51.2 bits (121), Expect = 2e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RGYCK+GS CRF+H
Sbjct: 234 WKPCLYYARGYCKNGSACRFVH 255


>tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_024599 PE=4 SV=1
Length = 757

Score = 51.2 bits (121), Expect = 2e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RGYCK+GS CRF+H
Sbjct: 207 WKPCLYYARGYCKNGSACRFVH 228


>tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27364 PE=4 SV=1
Length = 721

Score = 51.2 bits (121), Expect = 2e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RGYCK+GS CRF+H
Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253


>tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_11406 PE=4 SV=1
Length = 686

Score = 50.8 bits (120), Expect = 3e-05
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RG+CK+GS+CRF+H
Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257


>tr|B7ETE2|B7ETE2_ORYSJ cDNA clone:J033099F01, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 687

Score = 50.8 bits (120), Expect = 3e-05
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RG+CK+GS+CRF+H
Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257


>tr|A3AHK0|A3AHK0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_010272 PE=4 SV=1
Length = 709

Score = 50.8 bits (120), Expect = 3e-05
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -1

Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122
WKPCLYY+RG+CK+GS+CRF+H
Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257