BP913337 |
Clone id |
YMU001_000029_B06 |
Library |
YMU01 |
Length |
481 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000029_B06. |
Accession |
BP913337 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2828Contig1 |
Sequence |
ACTCCATTTCCAATCTCTCCAAGGATCCGGGAACAACCATGTCGTCAATACGATAATCTC GCTGGCCATTGGATGACACAGAACTTGGAGATCCAGAGTCAGATCTCAAGGTATGGTGAG CGTGTAAGAACCTGCAATTGGATCCATGTTTACAATAGCCTCTGCTGTAGTAGAGGCAAG GCTTCCATGCAGGAGAGAGACAGGTGCTATCTGGAGACAATGGGAAATCGGAGAGAGATG ATGGTCTTCGAGCTGTAACTGACAGGGGTCGGGAGAAAAAGTTAGGACCTGCTTCAGCAT GAAACTTATCCACAAGGAGATTGGAAATCACATCTGGTGGCGGAGGATATGCATCATCAA AACCATTGCTGTAGTGGGGATGATGGTGATGATGCTGTTGGTGATGTAGAGGAGTTACTG GGGCAGAATTGGATGGTTGAAGAGAATCCTCTCCATAGTAAGGAAAAGGATCTGGAGGGA G |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0D3J9 |
Definition |
sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica |
Align length |
22 |
Score (bit) |
51.2 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913337|Adiantum capillus-veneris mRNA, clone: YMU001_000029_B06. (481 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein... 51 2e-06 sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein... 51 3e-06 sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein... 50 4e-06 sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein... 43 7e-04 sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein... 38 0.028 sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida gl... 36 0.080 sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein ... 35 0.18 sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity f... 35 0.23 sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity f... 35 0.23 sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity fac... 35 0.23 sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity f... 35 0.23 sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity f... 35 0.23 sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein... 34 0.30 sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia l... 34 0.30 sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwc2 OS=Schizosacc... 34 0.30 sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein ... 34 0.30 sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containin... 34 0.30 sp|Q9QXP6|MKRN1_MOUSE Makorin-1 OS=Mus musculus GN=Mkrn1 PE=2 SV=1 34 0.40 sp|Q4PA86|CWC2_USTMA Pre-mRNA-splicing factor CWC2 OS=Ustilago m... 34 0.40 sp|Q51TF7|CWC2_MAGGR Pre-mRNA-splicing factor CWC2 OS=Magnaporth... 33 0.52 sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromy... 33 0.52 sp|Q9ERV1|MKRN2_MOUSE Makorin-2 OS=Mus musculus GN=Mkrn2 PE=2 SV=1 33 0.68 sp|Q9H000|MKRN2_HUMAN Makorin-2 OS=Homo sapiens GN=MKRN2 PE=2 SV=2 33 0.68 sp|Q9UHC7|MKRN1_HUMAN Makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3 33 0.68 sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphae... 33 0.68 sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella... 33 0.68 sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Aspergillu... 33 0.68 sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein... 33 0.68 sp|Q60764|MKRN3_MOUSE Makorin-3 OS=Mus musculus GN=Mkrn3 PE=2 SV=1 33 0.89 sp|Q13064|MKRN3_HUMAN Makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 33 0.89
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1 Length = 682
Score = 51.2 bits (121), Expect = 2e-06 Identities = 18/22 (81%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RGYCK+GS CRF+H Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2 Length = 688
Score = 50.8 bits (120), Expect = 3e-06 Identities = 17/22 (77%), Positives = 22/22 (100%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RG+CK+GS+CRF+H Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1 Length = 677
Score = 50.4 bits (119), Expect = 4e-06 Identities = 17/22 (77%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RG+CK+GS CRF+H Sbjct: 231 WKPCLYYARGFCKNGSTCRFVH 252
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2 Length = 653
Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/61 (39%), Positives = 31/61 (50%) Frame = -1
Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERLEM 5 +PC Y+S+G CK+G NC + +HH + NG V PGSLE LEM Sbjct: 264 RPCHYFSKGICKNGQNCHY--SHH--QVYQDALAGAAINGDVYNHQPGGVTPGSLETLEM 319
Query: 4 E 2 E Sbjct: 320 E 320
>sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2 Length = 702
Score = 37.7 bits (86), Expect = 0.028 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -1
Query: 187 WKPC-LYYSRGYCKHGSNCRFLH 122 WKPC +Y +G+C +G NC+F+H Sbjct: 677 WKPCFIYQQQGWCPYGENCKFMH 699
>sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida glabrata GN=CWC2 PE=3 SV=1 Length = 306
Score = 36.2 bits (82), Expect = 0.080 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1
Query: 196 SPAWKPCLYYSRGYCKHGSNCRFLH 122 S WK CLY++RG C G C +LH Sbjct: 64 SGTWKFCLYFARGLCALGHKCEYLH 88
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Length = 466
Score = 35.0 bits (79), Expect = 0.18 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1
Query: 199 LSPAWKPCLYYSR-GYCKHGSNCRFLHAHHTL 107 L P +PC YY++ G+CK G C+F H TL Sbjct: 344 LRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTL 375
Score = 30.4 bits (67), Expect = 4.4 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -1
Query: 184 KPCLYYSR-GYCKHGSNCRFLH 122 K C YY + G+CK GS C+F H Sbjct: 149 KDCTYYVKTGHCKFGSTCKFHH 170
Score = 29.3 bits (64), Expect = 9.8 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -1
Query: 193 PAWKPCLYYSR-GYCKHGSNCRFLH 122 P C+YY R G C +G NCR+ H Sbjct: 52 PGEADCVYYLRTGACGYGENCRYNH 76
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1 Length = 269
Score = 34.7 bits (78), Expect = 0.23 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1
Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107 K C +Y RG+CKHG CR H + Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147
Score = 30.0 bits (66), Expect = 5.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1
Query: 178 CLYYSRGYCKHGSNCRFLHAH 116 C ++ RG CK G C FLH + Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88
Score = 29.3 bits (64), Expect = 9.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1
Query: 178 CLYYSRGYCKHGSNCRFLHAHHTL 107 C+ Y G+C G NC+F+H L Sbjct: 148 CVNYLVGFCIEGPNCKFMHPRFEL 171
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1 Length = 269
Score = 34.7 bits (78), Expect = 0.23 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1
Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107 K C +Y RG+CKHG CR H + Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147
Score = 30.0 bits (66), Expect = 5.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1
Query: 178 CLYYSRGYCKHGSNCRFLHAH 116 C ++ RG CK G C FLH + Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88
Score = 29.3 bits (64), Expect = 9.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1
Query: 178 CLYYSRGYCKHGSNCRFLHAHHTL 107 C+ Y G+C G NC+F+H L Sbjct: 148 CVNYLVGFCIEGPNCKFMHPRFEL 171
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1 Length = 243
Score = 34.7 bits (78), Expect = 0.23 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1
Query: 184 KPCLYYSRGYCKHGSNCRFLHAHHTL 107 K C +Y RG+CKHG CR H + Sbjct: 122 KDCPWYDRGFCKHGPLCRHRHTRRVI 147
Score = 30.0 bits (66), Expect = 5.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1
Query: 178 CLYYSRGYCKHGSNCRFLHAH 116 C ++ RG CK G C FLH + Sbjct: 68 CKHWLRGLCKKGDQCEFLHEY 88
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RVK1 |
Definition |
tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
63 |
Score (bit) |
68.9 |
E-value |
1.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913337|Adiantum capillus-veneris mRNA, clone: YMU001_000029_B06. (481 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella paten... 69 1e-10 tr|A9SY40|A9SY40_PHYPA Predicted protein OS=Physcomitrella paten... 65 2e-09 tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x Po... 52 2e-05 tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequen... 51 2e-05 tr|B6UER2|B6UER2_MAIZE Nucleic acid binding protein OS=Zea mays ... 51 2e-05 tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza... 51 2e-05 tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza... 51 2e-05 tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza... 51 3e-05 tr|B7ETE2|B7ETE2_ORYSJ cDNA clone:J033099F01, full insert sequen... 51 3e-05 tr|A3AHK0|A3AHK0_ORYSJ Putative uncharacterized protein OS=Oryza... 51 3e-05 tr|B8AP12|B8AP12_ORYSI Putative uncharacterized protein OS=Oryza... 50 4e-05 tr|A3AHK1|A3AHK1_ORYSJ Putative uncharacterized protein OS=Oryza... 50 4e-05 tr|B6UEB5|B6UEB5_MAIZE Nucleic acid binding protein OS=Zea mays ... 50 6e-05 tr|A7PQV9|A7PQV9_VITVI Chromosome chr6 scaffold_25, whole genome... 48 3e-04 tr|A5C749|A5C749_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|A7P0E3|A7P0E3_VITVI Chromosome chr19 scaffold_4, whole genome... 47 6e-04 tr|A5CBS7|A5CBS7_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04 tr|Q9SJ41|Q9SJ41_ARATH Putative uncharacterized protein At2g0516... 43 0.007 tr|B7F483|B7F483_ORYSJ cDNA clone:J013094C18, full insert sequen... 43 0.007 tr|A2YQU0|A2YQU0_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.007 tr|Q94CJ8|Q94CJ8_ARATH Putative uncharacterized protein At5g1244... 41 0.026 tr|Q8GS07|Q8GS07_ARATH Putative uncharacterized protein At5g1244... 41 0.026 tr|A9TCL0|A9TCL0_PHYPA Predicted protein (Fragment) OS=Physcomit... 40 0.044 tr|Q9SV09|Q9SV09_ARATH Putative uncharacterized protein F4F15.60... 40 0.057 tr|Q8RXK0|Q8RXK0_ARATH Putative uncharacterized protein At3g5195... 40 0.057 tr|Q8L9E0|Q8L9E0_ARATH Putative uncharacterized protein OS=Arabi... 40 0.057 tr|A7Q340|A7Q340_VITVI Chromosome chr12 scaffold_47, whole genom... 39 0.098 tr|A9TYM9|A9TYM9_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.17 tr|A7Q1Y9|A7Q1Y9_VITVI Chromosome chr13 scaffold_45, whole genom... 39 0.17 tr|Q5CYT2|Q5CYT2_CRYPV 3CCCH domain containing protein (Fragment... 39 0.17
>tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_119974 PE=4 SV=1 Length = 421
Score = 68.9 bits (167), Expect = 1e-10 Identities = 33/63 (52%), Positives = 40/63 (63%) Frame = -1
Query: 190 AWKPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERL 11 AWKPCLY++RGYCKHGS+CR SNG R+ R+DD + PGSLERL Sbjct: 192 AWKPCLYFARGYCKHGSSCR---------------SPASSNGHRELRVDDGMAPGSLERL 236
Query: 10 EME 2 E+E Sbjct: 237 EIE 239
>tr|A9SY40|A9SY40_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_137259 PE=4 SV=1 Length = 386
Score = 65.1 bits (157), Expect = 2e-09 Identities = 31/63 (49%), Positives = 37/63 (58%) Frame = -1
Query: 190 AWKPCLYYSRGYCKHGSNCRFLHAHHTLRXXXXXXXXXXSNGQRDYRIDDMVVPGSLERL 11 AWKPCLY++RGYCKHGS+CRFLH +DD + PGSLERL Sbjct: 165 AWKPCLYFARGYCKHGSSCRFLHG-----------------------MDDGMAPGSLERL 201
Query: 10 EME 2 E+E Sbjct: 202 EIE 204
>tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x Populus alba PE=2 SV=1 Length = 705
Score = 51.6 bits (122), Expect = 2e-05 Identities = 17/22 (77%), Positives = 22/22 (100%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 W+PCLY++RGYCK+GSNCRF+H Sbjct: 233 WRPCLYFARGYCKNGSNCRFVH 254
>tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 682
Score = 51.2 bits (121), Expect = 2e-05 Identities = 18/22 (81%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RGYCK+GS CRF+H Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253
>tr|B6UER2|B6UER2_MAIZE Nucleic acid binding protein OS=Zea mays PE=2 SV=1 Length = 653
Score = 51.2 bits (121), Expect = 2e-05 Identities = 18/22 (81%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RGYCK+GS CRF+H Sbjct: 234 WKPCLYYARGYCKNGSACRFVH 255
>tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024599 PE=4 SV=1 Length = 757
Score = 51.2 bits (121), Expect = 2e-05 Identities = 18/22 (81%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RGYCK+GS CRF+H Sbjct: 207 WKPCLYYARGYCKNGSACRFVH 228
>tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27364 PE=4 SV=1 Length = 721
Score = 51.2 bits (121), Expect = 2e-05 Identities = 18/22 (81%), Positives = 21/22 (95%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RGYCK+GS CRF+H Sbjct: 232 WKPCLYYARGYCKNGSACRFVH 253
>tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11406 PE=4 SV=1 Length = 686
Score = 50.8 bits (120), Expect = 3e-05 Identities = 17/22 (77%), Positives = 22/22 (100%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RG+CK+GS+CRF+H Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257
>tr|B7ETE2|B7ETE2_ORYSJ cDNA clone:J033099F01, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 687
Score = 50.8 bits (120), Expect = 3e-05 Identities = 17/22 (77%), Positives = 22/22 (100%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RG+CK+GS+CRF+H Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257
>tr|A3AHK0|A3AHK0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_010272 PE=4 SV=1 Length = 709
Score = 50.8 bits (120), Expect = 3e-05 Identities = 17/22 (77%), Positives = 22/22 (100%) Frame = -1
Query: 187 WKPCLYYSRGYCKHGSNCRFLH 122 WKPCLYY+RG+CK+GS+CRF+H Sbjct: 236 WKPCLYYARGFCKNGSSCRFVH 257
|