NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913344
Clone id YMU001_000029_C01
Library
Length 292
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGCAAATGGCTGCGATAGTGCGTATCGCTGATAAGGGGATAGACTCAAGCATATAAGGG
TGAGTATGGTTCCTCTTTAAACGAAGAATAATTCTCTGTCTTGAATTGTTTTCAGTGGAG
CAAACACGTGTGAGTGTCTCAGGAGCTCCCGCTCGCAATGGGATATTTCCCTTGGTTTTG
GATAAGTTTTCACGCGAGAAAACTCTATTGTTATGCAATCTGTCACGATGGAACTGTGCG
TACCTGTGGGGTGTTACAAAGTGATGACGTAGTATGACATAAAGGACGGACT
■■Homology search results ■■ -
sp_hit_id Q9NS40
Definition sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens
Align length 71
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913344|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_C01.
         (292 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily ...    32   1.3  
sp|O54852|KCNH7_RAT Potassium voltage-gated channel subfamily H ...    30   2.8  
sp|P10075|GLI4_HUMAN Zinc finger protein GLI4 OS=Homo sapiens GN...    30   4.8  
sp|A5GQ11|TIG_SYNR3 Trigger factor OS=Synechococcus sp. (strain ...    29   6.3  
sp|P12822|ACE_RABIT Angiotensin-converting enzyme, somatic isofo...    29   8.2  
sp|Q10751|ACE_CHICK Angiotensin-converting enzyme (Fragment) OS=...    29   8.2  
sp|P22968|ACET_RABIT Angiotensin-converting enzyme, testis-speci...    29   8.2  
sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily ...    29   8.2  

>sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H
            member 7 OS=Homo sapiens GN=KCNH7 PE=1 SV=1
          Length = 1196

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = -3

Query: 218  LHNNRVFSRENLSKTKGNIPLRAGAPETLTRVCSTENNSRQRIILRLKRNHTHPYMLESI 39
            L  +++ S+E+LS     + L   + + LT +   +++    + LR ++ + HP    S+
Sbjct: 1115 LEKSKLKSKESLSS---GVHLNTASEDNLTSLLKQDSDLSLELHLRQRKTYVHPIRHPSL 1171

Query: 38   PLSAIRTIAAI 6
            P S++ T+  +
Sbjct: 1172 PDSSLSTVGIV 1182


>sp|O54852|KCNH7_RAT Potassium voltage-gated channel subfamily H
            member 7 OS=Rattus norvegicus GN=Kcnh7 PE=1 SV=1
          Length = 1195

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/71 (22%), Positives = 38/71 (53%)
 Frame = -3

Query: 218  LHNNRVFSRENLSKTKGNIPLRAGAPETLTRVCSTENNSRQRIILRLKRNHTHPYMLESI 39
            L  +++ S+E+LS  K    L   + + LT +   ++++   +  R ++++ HP    S+
Sbjct: 1114 LEKSKLKSKESLSSGKR---LNTASEDNLTSLLKQDSDASSELDPRQRKSYLHPIRHPSL 1170

Query: 38   PLSAIRTIAAI 6
            P S++ T+  +
Sbjct: 1171 PDSSLSTVGIL 1181


>sp|P10075|GLI4_HUMAN Zinc finger protein GLI4 OS=Homo sapiens
           GN=GLI4 PE=1 SV=2
          Length = 376

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 232 SIVTDCITIEFSRVKTYPKPREISHCERELLRHSHVFAPLKT 107
           + +   + IE  R+ T  KP E S C +     SH F  L+T
Sbjct: 303 AFIWSSVLIEHQRIHTGEKPYECSDCGKAFRGRSHFFRHLRT 344


>sp|A5GQ11|TIG_SYNR3 Trigger factor OS=Synechococcus sp. (strain
           RCC307) GN=tig PE=3 SV=1
          Length = 491

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 112 SVEQTRVSVSGAPARNGIFPLVLDKFSREKTLLL 213
           +VEQ +V V G P+ +G F  +L+KF   K L++
Sbjct: 83  AVEQEKVEVLGQPSLSGNFEELLEKFDPAKELVV 116


>sp|P12822|ACE_RABIT Angiotensin-converting enzyme, somatic isoform
            OS=Oryctolagus cuniculus GN=ACE PE=1 SV=3
          Length = 1310

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 164  YFPWFWISFHARKLYCYAICHDGTVRTCGVLQSDD 268
            YF  F I F   +  C A  H G + TC + QS +
Sbjct: 1132 YFVSFIIQFQFHEALCKAAGHTGPLHTCDIYQSKE 1166


>sp|Q10751|ACE_CHICK Angiotensin-converting enzyme (Fragment)
            OS=Gallus gallus GN=ACE PE=2 SV=1
          Length = 1193

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 164  YFPWFWISFHARKLYCYAICHDGTVRTCGVLQSDD 268
            YF  F I F   +  C A  H G + TC + QS +
Sbjct: 1026 YFVSFVIQFQFHQALCKAAGHTGPLHTCDIYQSKE 1060


>sp|P22968|ACET_RABIT Angiotensin-converting enzyme, testis-specific
           isoform OS=Oryctolagus cuniculus GN=ACE PE=1 SV=1
          Length = 737

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 164 YFPWFWISFHARKLYCYAICHDGTVRTCGVLQSDD 268
           YF  F I F   +  C A  H G + TC + QS +
Sbjct: 559 YFVSFIIQFQFHEALCKAAGHTGPLHTCDIYQSKE 593


>sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily H
            member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=1
          Length = 1195

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/71 (21%), Positives = 37/71 (52%)
 Frame = -3

Query: 218  LHNNRVFSRENLSKTKGNIPLRAGAPETLTRVCSTENNSRQRIILRLKRNHTHPYMLESI 39
            L  +++ S+E+LS  +    L   + + LT +   ++++   +  R ++ + HP    S+
Sbjct: 1114 LEKSKLQSKESLSSGRR---LNTASEDNLTSLLKQDSDASSELDPRQRKTYLHPIRHPSL 1170

Query: 38   PLSAIRTIAAI 6
            P S++ T+  +
Sbjct: 1171 PDSSLSTVGIL 1181
tr_hit_id Q6BTQ2
Definition tr|Q6BTQ2|Q6BTQ2_DEBHA DEHA2C16764p OS=Debaryomyces hansenii
Align length 29
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913344|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_C01.
         (292 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BTQ2|Q6BTQ2_DEBHA DEHA2C16764p OS=Debaryomyces hansenii GN=...    34   3.2  
tr|B1SCW8|B1SCW8_9STRE Putative uncharacterized protein OS=Strep...    33   7.1  
tr|B7P833|B7P833_IXOSC Putative uncharacterized protein (Fragmen...    33   9.2  

>tr|Q6BTQ2|Q6BTQ2_DEBHA DEHA2C16764p OS=Debaryomyces hansenii
           GN=DEHA2C16764g PE=4 SV=2
          Length = 990

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 206 YCYAICHDGTVRTCGVLQSDDVV*HKGRT 292
           YC A+CH GT   C    ++D+V H GRT
Sbjct: 489 YCEALCHSGTCGVCLESSNEDLVCHCGRT 517


>tr|B1SCW8|B1SCW8_9STRE Putative uncharacterized protein
           OS=Streptococcus infantarius subsp. infantarius ATCC
           BAA-102 GN=STRINF_00512 PE=4 SV=1
          Length = 400

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 164 YFPWFWISFHARKLYCYAICHDGTVRTCGVLQSDDVV 274
           YFP+F+I+F    L+ Y+I  DG  +  GVL+   ++
Sbjct: 254 YFPFFYITFQVITLFSYSINIDGVKKYAGVLKFSPLI 290


>tr|B7P833|B7P833_IXOSC Putative uncharacterized protein (Fragment)
           OS=Ixodes scapularis GN=IscW_ISCW003393 PE=4 SV=1
          Length = 558

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 244 GTHSSIVTDCITIEFSRVKTYPKPREISHCERELL-RHSHVFAPL 113
           G  S++V  CI+  +++VKTYP     SH +R+LL R S  FAP+
Sbjct: 328 GVTSAVVHLCISTCYTQVKTYP-AEMFSHLQRQLLARLSGRFAPI 371