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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913357
Clone id YMU001_000029_D03
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCACAGAGGCTCTTCACTGTCTAGTTCCTCCACATACACTTTCCAATCTTTAGGCACCT
CGTAATAAGCGTTTATAAAACCAGAGGCCATCCACAAGTCCTCCTCTTCATACATGTAGG
GATGTGAGGGGTCCGTAAATGGACCTTTAACTTGCCGCACCATTCCATCTGGCTTGTTTG
CAAACATTCTGGCTTTTGCAGCTGCCACTTCTGCAAGACCAGCATGTAAAGCAGTGTAAT
CAATAGTGCACTCATCAGGATCAGGTAGCAACTCTCCAAAGTAAAATTTACCCCAGATAG
CAAGGCCATTTACTTCATACACTCCACAGCCATGGAAGCGACTATGCTTCCATTGCCCAG
CGTATTTATAGTGCCCCTTTTCCGGGAGCTCACCAAACTCCTCAATCCACCCTTCTTTTT
CTTCCCCAGGCGTAAAAACTCTACCATGTTCCTCAAACTGCTCTTCGGCATCCATTTTCA
GCCATTCCCGGTCAAAAGGATCCATGTAATCTGACCTCAAAAGCTGACCCTCGGNCTTGG
CCTGTGCTGCTTCTTCAGTATCTGGTAT
■■Homology search results ■■ -
sp_hit_id Q8UCC9
Definition sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Align length 45
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913357|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_D03.
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC OS=Agrob...    32   2.9  
sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever vi...    31   4.9  
sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever viru...    30   8.3  
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c...    30   8.4  

>sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=thiC PE=3 SV=2
          Length = 607

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 181 ANKPDGMVRQVKGPFTDPSHPYMYE------EEDLWMASGFINAY 65
           A +P   V    GP+TDPSHP + E        D  +A G + AY
Sbjct: 46  AGEPPVTVYDSSGPYTDPSHPVLIENGLPRLRHDWVVARGDVEAY 90


>sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS119-1 PE=3 SV=1
          Length = 119

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 245 Y*LHCFTCWSCRSGSCKSQ 189
           Y  HC  CW CR+G CK++
Sbjct: 48  YGKHCDFCWECRNGICKNK 66


>sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS290 PE=3 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 245 Y*LHCFTCWSCRSGSCKSQ 189
           Y  HC  CW+C+ G CK++
Sbjct: 208 YAKHCDFCWTCKDGMCKNK 226


>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c
           PE=2 SV=2
          Length = 705

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 131 VRKWTFNLPHHSIWLVCK 184
           VR W    PHH +WL CK
Sbjct: 190 VRSWVTRSPHHVVWLNCK 207
tr_hit_id A9TKY9
Definition tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 190
Score (bit) 219.0
E-value 6.0e-56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913357|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_D03.
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella paten...   219   6e-56
tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana...   203   6e-51
tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome...   196   8e-49
tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromos...   125   2e-27
tr|Q00YE4|Q00YE4_OSTTA Phosphatidylinositol-4-phosphate 5-kinase...    47   6e-04
tr|A4S579|A4S579_OSTLU Predicted protein OS=Ostreococcus lucimar...    40   0.090
tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein OS=Trypa...    35   2.9  
tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein OS=Trypa...    35   2.9  
tr|A0EEG6|A0EEG6_PARTE Chromosome undetermined scaffold_91, whol...    35   2.9  
tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein OS=Trypa...    35   3.8  
tr|Q4CU33|Q4CU33_TRYCR Putative uncharacterized protein OS=Trypa...    35   3.8  
tr|Q245C2|Q245C2_TETTH Putative uncharacterized protein OS=Tetra...    35   3.8  
tr|B4LD91|B4LD91_DROVI GJ14095 OS=Drosophila virilis GN=GJ14095 ...    35   3.8  
tr|B3RI84|B3RI84_TRIAD Putative uncharacterized protein OS=Trich...    34   5.0  
tr|A0EF01|A0EF01_PARTE Chromosome undetermined scaffold_92, whol...    34   5.0  
tr|B4KV36|B4KV36_DROMO GI13750 OS=Drosophila mojavensis GN=GI137...    34   6.5  
tr|Q0T4Z5|Q0T4Z5_SHIF8 Putative dioxygenase alpha subunit OS=Shi...    33   8.3  
tr|Q18BW3|Q18BW3_CLOD6 Putative uncharacterized protein OS=Clost...    33   8.5  
tr|Q8L7W4|Q8L7W4_ARATH AT4g17080/dl4570w OS=Arabidopsis thaliana...    33   8.5  
tr|O23552|O23552_ARATH Putative uncharacterized protein AT4g1708...    33   8.5  
tr|B8XY96|B8XY96_BRARP MORN OS=Brassica rapa subsp. pekinensis P...    33   8.5  
tr|Q580Z8|Q580Z8_9TRYP Putative uncharacterized protein OS=Trypa...    33   8.5  
tr|B4M312|B4M312_DROVI GJ19042 OS=Drosophila virilis GN=GJ19042 ...    33   8.5  
tr|A4HCH7|A4HCH7_LEIBR Putative uncharacterized protein OS=Leish...    33   8.5  
tr|A0C0R8|A0C0R8_PARTE Chromosome undetermined scaffold_140, who...    33   8.5  
tr|A0BD49|A0BD49_PARTE Chromosome undetermined scaffold_10, whol...    33   8.5  

>tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170651 PE=4 SV=1
          Length = 860

 Score =  219 bits (559), Expect = 6e-56
 Identities = 100/190 (52%), Positives = 127/190 (66%), Gaps = 2/190 (1%)
 Frame = -1

Query: 565 PDTEEAAQAKXEGQLLRSDYMDPFDREWLKMDAEEQFEEHGRVF--TPXXXXXXXXXXXX 392
           P +E   + K EG++L +D++ P D+EWL+MD E+   ++       P            
Sbjct: 279 PGSELERKMKAEGKILTTDFLSPEDKEWLRMDLEDALADNPEAVDTNPFEDDDLWVKYFG 338

Query: 391 ELPEKGHYKYAGQWKHSRFHGCGVYEVNGLAIWGKFYFGELLPDPDECTIDYTXXXXXXX 212
           E PEKGHYKYAGQWKHSR HGCGVYE+NG   WGKFYFGE+LPD +EC    +       
Sbjct: 339 EKPEKGHYKYAGQWKHSRMHGCGVYELNGRQTWGKFYFGEMLPDEEECDDKLSAMHASLA 398

Query: 211 XXXXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMASGFINAYYEVPKDWKVYV 32
                 ARMF NKPDGMVR++KGPF+DP HPYMYEEED+WMA GFIN +Y VP+ W+ YV
Sbjct: 399 EVAAAKARMFVNKPDGMVREMKGPFSDPQHPYMYEEEDMWMAPGFINQFYPVPEVWERYV 458

Query: 31  EELDSEEPLW 2
           +E+DSE+ +W
Sbjct: 459 KEVDSEQEMW 468


>tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana
           GN=At5g22640 PE=2 SV=1
          Length = 871

 Score =  203 bits (516), Expect = 6e-51
 Identities = 93/190 (48%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
 Frame = -1

Query: 568 IPDTEEAAQAKXEGQLLRSDYMDPFDREWLKMDAEEQFE-EHGRVFTPXXXXXXXXXXXX 392
           IP ++  A+ + EG++++ DYM P DR+WL+MD E+      G    P            
Sbjct: 268 IPGSKLEAKMRAEGRIIKRDYMTPEDRKWLEMDVEDSVALTDGNFQVPFYENEEWVTQFG 327

Query: 391 ELPEKGHYKYAGQWKHSRFHGCGVYEVNGLAIWGKFYFGELLPDPDECTIDYTXXXXXXX 212
           E PEKG Y+YAGQWKHSR HGCGVYEVN   ++G+FYFGELL +   CT+D         
Sbjct: 328 EKPEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICALHSGLA 387

Query: 211 XXXXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMASGFINAYYEVPKDWKVYV 32
                 ARMF NKPDGM+R+ +GP+ DP HPY YEE+D+WMA GFIN +YEVP+ W+ YV
Sbjct: 388 EVAAAKARMFVNKPDGMIREERGPYGDPQHPYFYEEDDVWMAPGFINQFYEVPEYWETYV 447

Query: 31  EELDSEEPLW 2
            E+D E  +W
Sbjct: 448 GEVDQEREMW 457


>tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022091001
           PE=4 SV=1
          Length = 845

 Score =  196 bits (498), Expect = 8e-49
 Identities = 91/190 (47%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
 Frame = -1

Query: 568 IPDTEEAAQAKXEGQLLRSDYMDPFDREWLKMDAEEQFEE-HGRVFTPXXXXXXXXXXXX 392
           +P ++   + + EG+++  D+M P D+EWL+MD E+     +G    P            
Sbjct: 257 VPGSKLEMKMRAEGKIISRDFMTPEDKEWLEMDIEDSINTANGNYEIPFYENDEWIKQFG 316

Query: 391 ELPEKGHYKYAGQWKHSRFHGCGVYEVNGLAIWGKFYFGELLPDPDECTIDYTXXXXXXX 212
             PEKG Y+YAGQWKH R HGCGVYEVN   I+G+FYFGELL D   C  + +       
Sbjct: 317 RKPEKGRYRYAGQWKHGRMHGCGVYEVNERTIYGRFYFGELLEDFYGCDENTSALHSGIA 376

Query: 211 XXXXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMASGFINAYYEVPKDWKVYV 32
                 ARMF NKPDGMVR+ +GP++DP HPY YEEED+WMA GFIN +YEVP  WK YV
Sbjct: 377 EVAAAKARMFINKPDGMVREERGPYSDPQHPYFYEEEDVWMAPGFINQFYEVPDYWKTYV 436

Query: 31  EELDSEEPLW 2
            E+D E  +W
Sbjct: 437 SEVDQEREMW 446


>tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MDJ22 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 942

 Score =  125 bits (314), Expect = 2e-27
 Identities = 62/138 (44%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
 Frame = -1

Query: 568 IPDTEEAAQAKXEGQLLRSDYMDPFDREWLKMDAEEQFE-EHGRVFTPXXXXXXXXXXXX 392
           IP ++  A+ + EG++++ DYM P DR+WL+MD E+      G    P            
Sbjct: 268 IPGSKLEAKMRAEGRIIKRDYMTPEDRKWLEMDVEDSVALTDGNFQVPFYENEEWVTQFG 327

Query: 391 ELPEKGHYKYAGQWKHSRFHGCGVYEVNGLAIWGKFYFGELLPDPDECTIDYTXXXXXXX 212
           E PEKG Y+YAGQWKHSR HGCGVYEVN   ++G+FYFGELL +   CT+D         
Sbjct: 328 EKPEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICALHSGLA 387

Query: 211 XXXXXXARMFANKPDGMV 158
                 ARMF NKPDG +
Sbjct: 388 EVAAAKARMFVNKPDGSI 405



 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 30/54 (55%), Positives = 42/54 (77%)
 Frame = -1

Query: 163 MVRQVKGPFTDPSHPYMYEEEDLWMASGFINAYYEVPKDWKVYVEELDSEEPLW 2
           ++R+ +GP+ DP HPY YEE+D+WMA GFIN +YEVP+ W+ YV E+D E  +W
Sbjct: 475 LIREERGPYGDPQHPYFYEEDDVWMAPGFINQFYEVPEYWETYVGEVDQEREMW 528


>tr|Q00YE4|Q00YE4_OSTTA Phosphatidylinositol-4-phosphate 5-kinase
           (ISS) OS=Ostreococcus tauri GN=Ot12g00080 PE=4 SV=1
          Length = 724

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
 Frame = -1

Query: 364 YAGQWKHSRFHGCGVYEVNGLAI----W-GKFYFGELLPDPDECTIDYTXXXXXXXXXXX 200
           Y G+WK++  +GCGV      A+    W    Y GE       C  D             
Sbjct: 494 YFGEWKNNSQNGCGVKLYGSGAVEVGEWKDDQYLGEYT---GRCGEDEQDTAMFNAMKAA 550

Query: 199 XXARMFANKPDGMVRQVKGPFTDP----SHPYMYEEEDLWMASGFINAYYEVPKDW 44
             ARMF NKPDG V  +K          +HP +YE    WM  G+    YE P D+
Sbjct: 551 NRARMFTNKPDGEVTILKNIARPEESVNNHPVVYEGGTEWMMPGYKGEQYEPPADF 606


>tr|A4S579|A4S579_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_26666 PE=4 SV=1
          Length = 325

 Score = 40.0 bits (92), Expect = 0.090
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
 Frame = -1

Query: 364 YAGQWKHSRFHGCGVYEVNGLAI----W-GKFYFGELLPDPDECTIDYTXXXXXXXXXXX 200
           Y G W+++  +GCGV      A+    W    Y GE       C  D             
Sbjct: 74  YYGHWQNNSQNGCGVKLYGSGAVEVGEWKDDQYLGEYT---GRCGEDEQNRAMMHAMEVA 130

Query: 199 XXARMFANKPDGMV---RQVKGPFTDPSH-PYMYEEEDLWMASGFINAYYEVPKD 47
             AR+F  KPDG V     +  P T  SH P +Y+    W   G+    +E P D
Sbjct: 131 TRARLFTGKPDGEVVVLENISNPDTAESHHPVVYDRGTEWQMPGYKGEQFEPPAD 185


>tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053504741.50 PE=4 SV=1
          Length = 175

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 KYAGQWKHSRFHGCGVY-EVNGLAIWGKFYFG 275
           +Y GQW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164


>tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511625.20 PE=4 SV=1
          Length = 175

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 KYAGQWKHSRFHGCGVY-EVNGLAIWGKFYFG 275
           +Y GQW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164


>tr|A0EEG6|A0EEG6_PARTE Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00026029001 PE=4 SV=1
          Length = 393

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
 Frame = -1

Query: 568 IPDTEEAAQAKXEGQLLRSDYMDPFDREWLK-MDAEEQFEEHGRVFTPXXXXXXXXXXXX 392
           IP T+   Q K +    + + +  F+++W+K +D   ++++  R+               
Sbjct: 8   IPPTKTLEQEKQKLLKEKDEIVFRFEQQWIKDLDEVGKYKKGIRI---KNYVDGSKYEGE 64

Query: 391 ELPEKG------HY----KYAGQWKHSRFHGCGVYEVNGLAIWGKFYFGEL 269
            + EK       HY    KY G+WK  RFHG GVY    +   G+ Y GEL
Sbjct: 65  VINEKRNGKGIYHYSNGDKYVGEWKDDRFHGKGVY----IFANGERYDGEL 111


>tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506229.20 PE=4 SV=1
          Length = 171

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 364 YAGQWKHSRFHGCGVY-EVNGLAIWGKFYFG 275
           Y G W+ +R HG G Y +VNG    GKFY G
Sbjct: 106 YEGAWRANRMHGLGTYTDVNGKVWNGKFYNG 136