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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913358
Clone id YMU001_000029_D04
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAAAAGGACACAGGCGCTCACATAGTGAAGTAGCTCCCACATTCTCAACAGGTACTGA
TACATTGTTTGGGCGCGTTCTTATGCAAGCTATACCAACGAGCAGGACATTGCACAGAGG
AATCTTGGCAGAAGTTTAAAGCAACAAACCCTCAGGTGAAGCAGGAACTGCATTGGGGAA
ATGAGAAGGAAGGCCAAGCTGCTGTATATGCAGTGGGCGAGCGAGGAGGAGATGGTGAAG
GCAGTGATGATCTTTTTTCCATGTACATTGATATGGATAAGATAGATAGCTTTCAGAATG
CAGAGGGCCCGGATAGCTCTGAGAACTATGCAAGGAGAGTGGATAAGGGTGCACGATCAA
GAGCCTCATCCTCTGCAAGTCAAGACAATGAAAAAAATCCATTGTTATCTTCAGAGAAAG
GGGAAAGTTTTCATGGTGGTACAGACAGTGACAAAGAAGATAGTGATAAGGAAGAGGACA
GCTATA
■■Homology search results ■■ -
sp_hit_id Q8SQA4
Definition sp|Q8SQA4|CD97_BOVIN CD97 antigen OS=Bos taurus
Align length 58
Score (bit) 30.4
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913358|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_D04.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SQA4|CD97_BOVIN CD97 antigen OS=Bos taurus GN=CD97 PE=2 SV=1      30   4.4  
sp|Q4R4V5|AT1B1_MACFA Sodium/potassium-transporting ATPase subun...    30   4.5  

>sp|Q8SQA4|CD97_BOVIN CD97 antigen OS=Bos taurus GN=CD97 PE=2 SV=1
          Length = 734

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 290 AIYLIHINVHGKKI--ITAFTISSSLAHCIYSSLAFLLISPMQ-----FLLHLRVCCF 138
           AI + H +V   K+  IT   ++ SLA  +   L FLL+ P+Q       LHL +C F
Sbjct: 432 AILMAHYDVEDPKLALITKVGLALSLACLLLCILTFLLVRPIQGSRTTVHLHLCICLF 489


>sp|Q4R4V5|AT1B1_MACFA Sodium/potassium-transporting ATPase subunit
           beta-1 OS=Macaca fascicularis GN=ATP1B1 PE=2 SV=1
          Length = 303

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 387 CLDLQRMRLLIVHPYPLSLHSSQSYPGPLHSESYLSYPYQCTWKKD 250
           C+ ++  R+L   P P    S ++YPG  ++ + L  P QCT K+D
Sbjct: 175 CIIIKLNRVLGFKPKPPKNESLETYPGMKYNANVL--PVQCTGKRD 218
tr_hit_id Q0SRJ3
Definition tr|Q0SRJ3|Q0SRJ3_CLOPS Sensor protein OS=Clostridium perfringens (strain SM101 / Type A)
Align length 60
Score (bit) 37.0
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913358|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_D04.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0SRJ3|Q0SRJ3_CLOPS Sensor protein OS=Clostridium perfringens...    37   0.48 
tr|A6VYE9|A6VYE9_MARMS Periplasmic lipoprotein-like protein OS=M...    33   5.5  
tr|Q8DE94|Q8DE94_VIBVU ABC-type Fe3+ transport system, permease ...    33   7.0  
tr|Q7MPC6|Q7MPC6_VIBVY Thiamine ABC transporter, permease protei...    33   7.0  
tr|Q9KP41|Q9KP41_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A5F595|A5F595_VIBC3 Putative thiamine ABC transporter, permea...    33   9.1  
tr|A6Y667|A6Y667_VIBCH Putative thiamine ABC transporter, permea...    33   9.1  
tr|A6XYE8|A6XYE8_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A6AFC9|A6AFC9_VIBCH Putative thiamine ABC transporter, permea...    33   9.1  
tr|A6A335|A6A335_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A3H1C9|A3H1C9_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A3GM99|A3GM99_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A3EKR9|A3EKR9_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A3EEI5|A3EEI5_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A2PQN2|A2PQN2_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A2PHG7|A2PHG7_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A2P920|A2P920_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A1F711|A1F711_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A1EM04|A1EM04_VIBCH Thiamine ABC transporter, permease protei...    33   9.1  
tr|A9U4F4|A9U4F4_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.1  

>tr|Q0SRJ3|Q0SRJ3_CLOPS Sensor protein OS=Clostridium perfringens
           (strain SM101 / Type A) GN=CPR_1954 PE=4 SV=1
          Length = 624

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = -2

Query: 332 CIVLRAIRALCILKAIYLIHINVHGKKIITAFTISSSLAHCIYSSLAFLLISPMQFLLHL 153
           C VL +I   C +  +Y+ ++N++ K I+  FTI S ++ C++  + F +IS +  LL L
Sbjct: 106 CNVLESI--YCFMIIVYVKYVNLNMKLIVVFFTIISLVSICLFDVIVFGVISTVLLLLIL 163


>tr|A6VYE9|A6VYE9_MARMS Periplasmic lipoprotein-like protein
           OS=Marinomonas sp. (strain MWYL1) GN=Mmwyl1_2559 PE=3
           SV=1
          Length = 352

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 432 ENFPLSLKITMDFFHCLDLQRMRLLIVHPYPLSLHSSQSY 313
           +N  L+L++  DFFH    Q  R+ +  P   S+ +SQSY
Sbjct: 293 QNIKLALQLPSDFFHANHTQEDRIALAKPLVKSISNSQSY 332


>tr|Q8DE94|Q8DE94_VIBVU ABC-type Fe3+ transport system, permease
           component OS=Vibrio vulnificus GN=VV1_0702 PE=3 SV=1
          Length = 529

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH+   LP++ ++L+  L +   + ++ A H    SWQKF+    P+++Q+L
Sbjct: 131 AHVFFNLPYAARLLLQTLESIPAEQHKLAAHLGMNSWQKFRWVEWPRLRQQL 182


>tr|Q7MPC6|Q7MPC6_VIBVY Thiamine ABC transporter, permease protein
           OS=Vibrio vulnificus (strain YJ016) GN=VV0438 PE=3 SV=1
          Length = 523

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH+   LP++ ++L+  L +   + ++ A H    SWQKF+    P+++Q+L
Sbjct: 125 AHVFFNLPYAARLLLQTLESIPAEQHKLAAHLGMNSWQKFRWVEWPRLRQQL 176


>tr|Q9KP41|Q9KP41_VIBCH Thiamine ABC transporter, permease protein,
           putative OS=Vibrio cholerae GN=VC_2538 PE=3 SV=1
          Length = 530

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 137 AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 188


>tr|A5F595|A5F595_VIBC3 Putative thiamine ABC transporter, permease
           protein OS=Vibrio cholerae serotype O1 (strain ATCC
           39541 / Ogawa 395 / O395) GN=VC0395_A2118 PE=3 SV=1
          Length = 530

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 137 AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 188


>tr|A6Y667|A6Y667_VIBCH Putative thiamine ABC transporter, permease
           protein (Fragment) OS=Vibrio cholerae RC385
           GN=VCRC385_1683 PE=3 SV=1
          Length = 488

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 95  AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 146


>tr|A6XYE8|A6XYE8_VIBCH Thiamine ABC transporter, permease protein,
           putative OS=Vibrio cholerae AM-19226 GN=A33_2476 PE=3
           SV=1
          Length = 532

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 139 AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 190


>tr|A6AFC9|A6AFC9_VIBCH Putative thiamine ABC transporter, permease
           protein OS=Vibrio cholerae 623-39 GN=A59_2616 PE=3 SV=1
          Length = 444

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 137 AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 188


>tr|A6A335|A6A335_VIBCH Thiamine ABC transporter, permease protein,
           putative OS=Vibrio cholerae MZO-2 GN=A5A_2718 PE=3 SV=1
          Length = 530

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  AHIVK*LPHSQQVLIHCLGAFLCKLYQRAGHCTEESWQKFKATN-PQVKQEL 170
           AH++  LP++ ++L+  L A   + ++   H     WQKFK    P+++Q+L
Sbjct: 137 AHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQL 188