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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913369
Clone id YMU001_000029_E03
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGAGGCTCTTCACTGTTAATTGCTTATGCGGACTGGCAGCCACTGGATTGAATCACGAT
CATATTCCTTCTCTGACCAACATTTCCAAATTACTGAATCCTTCACTTCAACTTCATTCT
CTGCTTGTAAGCTCCAACCTAGACGCTCTAGAAGAACGGTCTCATCTTGTTCGTTATGTT
CAGGGTCTTTGATGTCAGCATCCTCATCTTCATCTGTGTCTTGCATCTTTGCGCCAGCAG
AGTCTTCAAGGCTTGGACCATCAACTGATGACATCAACTCATCTTTTTCTTTCCCTTTAT
TCACTATGGCAGGCTCATACCAGCCAGTCCACCCTCCCAGTTCTGACTCTTCACCTATAG
TGCCTTCTGCCTGATCCTTGGCTAGAGACTTCTGTATCCACTCTTCCTCCTTTTGAAGCC
ATAA
■■Homology search results ■■ -
sp_hit_id Q32743
Definition sp|Q32743|SECA_OLILU Protein translocase subunit secA OS=Olisthodiscus luteus
Align length 40
Score (bit) 30.0
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913369|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_E03.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32743|SECA_OLILU Protein translocase subunit secA OS=Olistho...    30   4.0  
sp|Q8ETH0|HMP_OCEIH Flavohemoprotein OS=Oceanobacillus iheyensis...    29   6.8  
sp|P40080|YEV8_YEAST Uncharacterized protein YER128W OS=Saccharo...    29   8.8  
sp|P70213|FV1_MOUSE Friend virus susceptibility protein 1 OS=Mus...    29   8.8  

>sp|Q32743|SECA_OLILU Protein translocase subunit secA
           OS=Olisthodiscus luteus GN=secA PE=3 SV=1
          Length = 884

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 178 HNEQDETVLLERL--GWSLQAENEVEVKDSVIWKCWSEKE 65
           + E + + +LE +  GWS   E    +++S++W+ +++K+
Sbjct: 809 YKEYERSCVLESIDHGWSTNLEKMETIRESIVWRVYAQKD 848


>sp|Q8ETH0|HMP_OCEIH Flavohemoprotein OS=Oceanobacillus iheyensis
           GN=hmp PE=3 SV=1
          Length = 406

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 352 EESELGGWTGWYEPAIVNKGKEKDELMS 269
           +++++GGWTG+ +  ++ K KE  E+ S
Sbjct: 150 KKNQIGGWTGFRDFKVIKKVKESKEITS 177


>sp|P40080|YEV8_YEAST Uncharacterized protein YER128W
           OS=Saccharomyces cerevisiae GN=YER128W PE=1 SV=1
          Length = 203

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -1

Query: 394 QKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLEDSAGAKMQ 221
           Q  L K + +     +++LG W GW       K KE +   S    P+  DS     Q
Sbjct: 66  QLKLVKGKMDSLTSAQTQLGSWDGWVTKIFSKKEKETNN--SKDPDPTTTDSTDTSPQ 121


>sp|P70213|FV1_MOUSE Friend virus susceptibility protein 1 OS=Mus
           musculus GN=Fv1 PE=2 SV=1
          Length = 459

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 391 KSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLEDSAG 233
           + ++ D+    IG+E +   W G     I ++G E+ EL + +  PSL + +G
Sbjct: 157 RKVSADKVRALIGKEWDPVTWDGDVWEDIDSEGSEEAELPTVLASPSLSEESG 209
tr_hit_id A7QW89
Definition tr|A7QW89|A7QW89_VITVI Chromosome undetermined scaffold_200, whole genome shotgun sequence OS=Vitis vinifera
Align length 132
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913369|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_E03.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QW89|A7QW89_VITVI Chromosome undetermined scaffold_200, who...    74   4e-12
tr|A9SLB3|A9SLB3_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|Q9LUM5|Q9LUM5_ARATH Similarity to unknown protein OS=Arabidop...    70   7e-11
tr|Q9LSH4|Q9LSH4_ARATH Similarity to unknown protein (At3g17740)...    69   9e-11
tr|Q6ZHF3|Q6ZHF3_ORYSJ Os02g0772500 protein OS=Oryza sativa subs...    61   2e-08
tr|B8AJ73|B8AJ73_ORYSI Putative uncharacterized protein OS=Oryza...    61   2e-08
tr|A3ABT7|A3ABT7_ORYSJ Putative uncharacterized protein OS=Oryza...    61   2e-08
tr|A5BN15|A5BN15_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|B4F299|B4F299_PROMH UDP-N-acetylmuramate:L-alanyl-gamma-D-glu...    34   4.1  
tr|B5SKV7|B5SKV7_RALSO Hypothetical signal peptide protein OS=Ra...    34   4.1  
tr|B5RWF2|B5RWF2_RALSO Putative uncharacterized protein OS=Ralst...    34   4.1  
tr|A3RSI7|A3RSI7_RALSO Putative uncharacterized protein OS=Ralst...    34   4.1  
tr|A4YS54|A4YS54_BRASO Putative ABC transporter (Substrate-bindi...    33   7.0  

>tr|A7QW89|A7QW89_VITVI Chromosome undetermined scaffold_200, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00007745001 PE=4 SV=1
          Length = 1157

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
 Frame = -1

Query: 421 WLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSS---VDGPS 251
           WL+KEEE  Q+ + ++ A+     E++ GGWTGW EP    K    ++   +   VD   
Sbjct: 508 WLEKEEENRQQVMKEETAD-----ENDKGGWTGWSEPLSKQKEINLEKTTDNDVDVDVED 562

Query: 250 LEDSAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSE 71
           LED    K                  E+D   L++ LG  + AE   EVKD+ IW  WSE
Sbjct: 563 LEDKLETK--------------DTEQEEDTEALMKMLGIDVNAEANNEVKDTSIWTRWSE 608

Query: 70  KEYDRDSIQWLP 35
           +E  RD  QW+P
Sbjct: 609 EESSRDCNQWMP 620


>tr|A9SLB3|A9SLB3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_165542 PE=4 SV=1
          Length = 1353

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
 Frame = -1

Query: 424  LWLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLE 245
            LWL+KEEE  QK+ A++  +    EE   GGWTGW EP           +MS +D    +
Sbjct: 689  LWLEKEEEQFQKARAQEAEQ----EEQAPGGWTGWSEP-----------VMSGIDVKMTD 733

Query: 244  DSA--GAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWS-LQAENEVEVKDSVIWKCWS 74
             +A  G                   +++DE  LL +LG S + A  E+EV DS +W  W+
Sbjct: 734  SAANAGKNGDTSSEERDQDEIEGVESDEDEATLLAKLGISSMDAGKELEVTDSEVWLRWA 793

Query: 73   EKEYDRDSIQWLPV 32
             +E  R   QWLP+
Sbjct: 794  TEERKRACEQWLPI 807


>tr|Q9LUM5|Q9LUM5_ARATH Similarity to unknown protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 890

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 44/132 (33%), Positives = 62/132 (46%)
 Frame = -1

Query: 424 LWLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLE 245
           LWL+KEEE  QK L ++ ++     ++E+GGWTGW E      G+  D+L S+  G    
Sbjct: 533 LWLEKEEENRQKILKEESSD-----DNEVGGWTGWTEQV---SGRNGDDLASANTGEVDV 584

Query: 244 DSAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSEKE 65
           D  G   +                E D   +L+ LG  +      EVKD+  W  W E+E
Sbjct: 585 DRKGLDEEMEDENSKP--------EDDTEAMLKLLGIDVNTAASDEVKDTSTWVEWFEEE 636

Query: 64  YDRDSIQWLPVR 29
             RD  QW+P R
Sbjct: 637 VSRDHSQWMPTR 648


>tr|Q9LSH4|Q9LSH4_ARATH Similarity to unknown protein (At3g17740)
           (Putative uncharacterized protein At3g17740/MIG5_3)
           OS=Arabidopsis thaliana GN=At3g17740/MIG5_3 PE=2 SV=1
          Length = 1149

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 43/132 (32%), Positives = 62/132 (46%)
 Frame = -1

Query: 424 LWLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLE 245
           LWL+KEEE  QK L ++ ++     ++E+GGWTGW E      G+  D++ S+  G    
Sbjct: 502 LWLEKEEENRQKILKEESSD-----DNEVGGWTGWTEQV---SGRNGDDIASANTGEVDV 553

Query: 244 DSAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSEKE 65
           D  G   +                E D   +L+ LG  +      EVKD+  W  W E+E
Sbjct: 554 DRKGLDEEMEDENSKP--------EDDTEAMLKLLGIDVNTAASDEVKDTSTWVKWFEEE 605

Query: 64  YDRDSIQWLPVR 29
             RD  QW+P R
Sbjct: 606 VSRDHSQWMPTR 617


>tr|Q6ZHF3|Q6ZHF3_ORYSJ Os02g0772500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1611_C08.15 PE=4 SV=1
          Length = 1164

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 59/130 (45%)
 Frame = -1

Query: 421 WLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLED 242
           WL K+EE  Q     D  E T  +E+E GGW+GW++P++    +      S+ DG   E+
Sbjct: 521 WLAKDEESRQNI---DIQENT--QETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAEN 575

Query: 241 SAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSEKEY 62
                                  ++D   LL++LG    A+   EVKD   W  WS  E 
Sbjct: 576 PDDEDPSA---------------QEDVESLLKKLGIDGDADYNSEVKDPKTWNRWSFMEL 620

Query: 61  DRDSIQWLPV 32
            RD+ QW+P+
Sbjct: 621 SRDNEQWMPL 630


>tr|B8AJ73|B8AJ73_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09115 PE=4 SV=1
          Length = 1127

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 59/130 (45%)
 Frame = -1

Query: 421 WLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLED 242
           WL K+EE  Q     D  E T  +E+E GGW+GW++P++    +      S+ DG   E+
Sbjct: 521 WLAKDEESRQNI---DIQENT--QETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAEN 575

Query: 241 SAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSEKEY 62
                                  ++D   LL++LG    A+   EVKD   W  WS  E 
Sbjct: 576 PDDEDPSA---------------QEDVESLLKKLGIDGDADYNSEVKDPKTWNRWSFMEL 620

Query: 61  DRDSIQWLPV 32
            RD+ QW+P+
Sbjct: 621 SRDNEQWMPL 630


>tr|A3ABT7|A3ABT7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008259 PE=4 SV=1
          Length = 1152

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 59/130 (45%)
 Frame = -1

Query: 421 WLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLED 242
           WL K+EE  Q     D  E T  +E+E GGW+GW++P++    +      S+ DG   E+
Sbjct: 509 WLAKDEESRQNI---DIQENT--QETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAEN 563

Query: 241 SAGAKMQXXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEVKDSVIWKCWSEKEY 62
                                  ++D   LL++LG    A+   EVKD   W  WS  E 
Sbjct: 564 PDDEDPSA---------------QEDVESLLKKLGIDGDADYNSEVKDPKTWNRWSFMEL 608

Query: 61  DRDSIQWLPV 32
            RD+ QW+P+
Sbjct: 609 SRDNEQWMPL 618


>tr|A5BN15|A5BN15_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006339 PE=4 SV=1
          Length = 849

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
 Frame = -1

Query: 421 WLQKEEEWIQKSLAKDQAEGTIGEESELGGWTGWYEPAIVNKGKEKDELMSSVDGPSLED 242
           WL+KEEE  Q+ + ++ A+     E++ GGWTGW EP  ++K KE +   +S+   +LE+
Sbjct: 171 WLEKEEENRQQVMKEETAD-----ENDKGGWTGWSEP--LSKQKEINLEKTSI---NLEN 220

Query: 241 SAGAKMQ-XXXXXXXXXXXXXEHNEQDETVLLERLGWSLQAENEVEV 104
            A   +                  E+D   L++ LG  + AE   E+
Sbjct: 221 VADNDVDVDVEDLEDKLETKDTEQEEDTEALMKMLGIDVNAEANNEI 267


>tr|B4F299|B4F299_PROMH
           UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (Murein peptide ligase)
           OS=Proteus mirabilis (strain HI4320) GN=mpl PE=4 SV=1
          Length = 459

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 139 GWSLQAENEVEVKDSVIWKCWSEKEYDRDSIQWLPVRISN 20
           G  +  +N++ +K ++   CWSE+EY  ++  W   +ISN
Sbjct: 215 GKIIMPDNDLNLKQTIGMGCWSEEEYTGETGDWQAKKISN 254


>tr|B5SKV7|B5SKV7_RALSO Hypothetical signal peptide protein
           OS=Ralstonia solanacearum IPO1609 GN=RSIPO_03022 PE=4
           SV=1
          Length = 380

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 367 EGTIGEESELGGWTGW---YEPAIVNKGKEKDELMSSVDGPSLED 242
           +GT+G+ ++  GW  W   YEP    + ++KD +  ++ G + +D
Sbjct: 80  QGTVGKAADSPGWNVWLSIYEPGPEERAEDKDPIAETLTGEAYDD 124