BP913387 |
Clone id |
YMU001_000029_F10 |
Library |
YMU01 |
Length |
499 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000029_F10. |
Accession |
BP913387 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL595Contig1 |
Sequence |
CCCCTATCTTCCCACTGATCAAATTGCATGATCTTCAGAGTACTTCCACCAATGCTGCCT GTCCTCGACTTAGATCATAGGTATTAGGAACTGTTGAAGCCATACATTTCCAGTAGCATC CCTCTCAAGTTCACTTCTTAACCTTTTTATCTCTGCAACAGCACCTTTGTACTCCAACTG TTCCAGAGGAAGAGATGCAAAATCTTCAAGAAACTTTCTTGCACGTGCTGCACCCCACAT TGTATCATCTGGCCCACAAACACGCTTGCGCTTGGATCCGACTTCCTCTTTCGAAATTTC CTCTTTGTTAGAGGCTTGGGAGAAATCTTCTAGTTCATTAGCCTTTTCCTTCGCAAGCTC AATGACACTTTCAGGAAAATGAGCAAACTCAGCTACATGTATACCAAAGCTTTGATCACA GGCCCCCTCCTCAACCTTATATAGCATAGTAAGCTTCCGCGAAACATCATCCAGATGAGC TTTCACATGATAATTAGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9XGC9 |
Definition |
sp|Q9XGC9|MSH2_MAIZE DNA mismatch repair protein MSH2 OS=Zea mays |
Align length |
137 |
Score (bit) |
172.0 |
E-value |
8.0e-43 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0DJI9 |
Definition |
tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subsp. japonica |
Align length |
138 |
Score (bit) |
182.0 |
E-value |
1.0e-44 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913387|Adiantum capillus-veneris mRNA, clone: YMU001_000029_F10. (499 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subs... 182 1e-44 tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza... 182 1e-44 tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza... 182 1e-44 tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physc... 177 2e-43 tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella paten... 177 2e-43 tr|B8A0F4|B8A0F4_MAIZE Putative uncharacterized protein OS=Zea m... 172 8e-42 tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hy... 160 2e-38 tr|A7PGN9|A7PGN9_VITVI Chromosome chr17 scaffold_16, whole genom... 138 2e-31 tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family)... 136 5e-31 tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimar... 134 2e-30 tr|Q4T7V9|Q4T7V9_TETNG Chromosome undetermined SCAF7971, whole g... 89 9e-17 tr|B8PEN7|B8PEN7_9APHY Predicted protein OS=Postia placenta Mad-... 88 2e-16 tr|B8PH91|B8PH91_9APHY Predicted protein OS=Postia placenta Mad-... 87 6e-16 tr|Q803R6|Q803R6_DANRE MutS homolog 2 (E. coli) OS=Danio rerio G... 86 7e-16 tr|Q5HZF7|Q5HZF7_XENLA MSH2 protein (Fragment) OS=Xenopus laevis... 86 1e-15 tr|B6PDP7|B6PDP7_BRAFL Putative uncharacterized protein OS=Branc... 86 1e-15 tr|B6M6D1|B6M6D1_BRAFL Putative uncharacterized protein OS=Branc... 86 1e-15 tr|B0DLM3|B0DLM3_LACBS Predicted protein (Fragment) OS=Laccaria ... 85 2e-15 tr|Q90XA7|Q90XA7_DANRE Mismatch repair protein Msh2 OS=Danio rer... 84 3e-15 tr|A4RDT4|A4RDT4_MAGGR DNA mismatch repair protein msh-2 OS=Magn... 82 1e-14 tr|A7SD83|A7SD83_NEMVE Predicted protein OS=Nematostella vectens... 82 1e-14 tr|B2AKZ5|B2AKZ5_PODAN Predicted CDS Pa_5_9410 (Fragment) OS=Pod... 81 2e-14 tr|Q76FQ4|Q76FQ4_CHICK Putative uncharacterized protein cMSH2 (F... 81 3e-14 tr|A6S313|A6S313_BOTFB Putative uncharacterized protein OS=Botry... 81 3e-14 tr|Q752H0|Q752H0_ASHGO AFR603Cp OS=Ashbya gossypii GN=AFR603C PE... 80 4e-14 tr|Q80V79|Q80V79_MOUSE MutS homolog 2 (E. coli) OS=Mus musculus ... 80 5e-14 tr|A6MKV2|A6MKV2_CALJA DNA mismatch repair protein Msh2-like pro... 80 5e-14 tr|Q0UFF6|Q0UFF6_PHANO Putative uncharacterized protein OS=Phaeo... 80 7e-14 tr|Q5KN74|Q5KN74_CRYNE DNA mismatch repair protein MSH2, putativ... 79 9e-14 tr|B1WBQ7|B1WBQ7_RAT Msh2 protein (MutS homolog 2) (E. coli) OS=... 79 1e-13
>tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subsp. japonica GN=Os05g0274200 PE=3 SV=1 Length = 942
Score = 182 bits (461), Expect = 1e-44 Identities = 91/138 (65%), Positives = 107/138 (77%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D SRKLTMLYKVE GACDQSFGIHVAEFA+FPE+V+ LAK KA ELEDFS Sbjct: 805 ANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKSKAEELEDFS 864
Query: 318 QASNKEEISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRL 139 A N + SK+EVGSKRKRV PDD GAARAR LE+ ASLPL++++ A + +L Sbjct: 865 TAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLLLEELASLPLDEMDGTKAAETVTKL 924
Query: 138 RSELERDATGNVWLQQFL 85 +S+ E+DA N WLQQFL Sbjct: 925 KSDFEKDAADNPWLQQFL 942
>tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19262 PE=4 SV=1 Length = 942
Score = 182 bits (461), Expect = 1e-44 Identities = 91/138 (65%), Positives = 107/138 (77%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D SRKLTMLYKVE GACDQSFGIHVAEFA+FPE+V+ LAK KA ELEDFS Sbjct: 805 ANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKSKAEELEDFS 864
Query: 318 QASNKEEISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRL 139 A N + SK+EVGSKRKRV PDD GAARAR LE+ ASLPL++++ A + +L Sbjct: 865 TAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLLLEELASLPLDEMDGTKAAETVTKL 924
Query: 138 RSELERDATGNVWLQQFL 85 +S+ E+DA N WLQQFL Sbjct: 925 KSDFEKDAADNPWLQQFL 942
>tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017106 PE=3 SV=1 Length = 905
Score = 182 bits (461), Expect = 1e-44 Identities = 91/138 (65%), Positives = 107/138 (77%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D SRKLTMLYKVE GACDQSFGIHVAEFA+FPE+V+ LAK KA ELEDFS Sbjct: 768 ANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKSKAEELEDFS 827
Query: 318 QASNKEEISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRL 139 A N + SK+EVGSKRKRV PDD GAARAR LE+ ASLPL++++ A + +L Sbjct: 828 TAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLLLEELASLPLDEMDGTKAAETVTKL 887
Query: 138 RSELERDATGNVWLQQFL 85 +S+ E+DA N WLQQFL Sbjct: 888 KSDFEKDAADNPWLQQFL 905
>tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physcomitrella patens PE=3 SV=1 Length = 951
Score = 177 bits (449), Expect = 2e-43 Identities = 86/140 (61%), Positives = 108/140 (77%), Gaps = 2/140 (1%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D S+KL MLYKVEEG CDQSFGIHVAEFAHFPESV+ELAK+KA ELEDFS Sbjct: 811 ANYHVSAHIDTKSQKLAMLYKVEEGPCDQSFGIHVAEFAHFPESVVELAKQKAAELEDFS 870
Query: 318 QASNKEE--ISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIK 145 +SK+EVG+KRKRV GPDD + GA R R+FL++ A+LP++++ + A++K Sbjct: 871 DTGKDVSGGLSKDEVGTKRKRVSGPDDKVLGAGRVRRFLQEMAALPVDKMSREETYAKLK 930
Query: 144 RLRSELERDATGNVWLQQFL 85 L+SE +RDA N WLQQ + Sbjct: 931 ALKSEFDRDAATNSWLQQIV 950
>tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_223185 PE=3 SV=1 Length = 956
Score = 177 bits (449), Expect = 2e-43 Identities = 86/140 (61%), Positives = 108/140 (77%), Gaps = 2/140 (1%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D S+KL MLYKVEEG CDQSFGIHVAEFAHFPESV+ELAK+KA ELEDFS Sbjct: 816 ANYHVSAHIDTKSQKLAMLYKVEEGPCDQSFGIHVAEFAHFPESVVELAKQKAAELEDFS 875
Query: 318 QASNKEE--ISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIK 145 +SK+EVG+KRKRV GPDD + GA R R+FL++ A+LP++++ + A++K Sbjct: 876 DTGKDVSGGLSKDEVGTKRKRVSGPDDKVLGAGRVRRFLQEMAALPVDKMSREETYAKLK 935
Query: 144 RLRSELERDATGNVWLQQFL 85 L+SE +RDA N WLQQ + Sbjct: 936 ALKSEFDRDAATNSWLQQIV 955
>tr|B8A0F4|B8A0F4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 618
Score = 172 bits (436), Expect = 8e-42 Identities = 84/137 (61%), Positives = 106/137 (77%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 ANYHV AH+D +SRKLTMLYKVE GACDQSFGIHVAEFA+FPE+V+ LAK KA ELEDFS Sbjct: 481 ANYHVGAHIDPLSRKLTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKSKAAELEDFS 540
Query: 318 QASNKEEISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRL 139 + K+EVGSKRKRV PDD GAARAR FLE+FA+LP+++++ + ++ Sbjct: 541 TTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEFAALPMDEMDGSKILEMATKM 600
Query: 138 RSELERDATGNVWLQQF 88 +++L++DA N WLQQF Sbjct: 601 KADLQKDAADNPWLQQF 617
>tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hybrida GN=MSH2 PE=2 SV=1 Length = 942
Score = 160 bits (406), Expect = 2e-38 Identities = 80/137 (58%), Positives = 106/137 (77%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 AN+HV AH+D SRKLTMLYKV+ GACDQSFGIHVAEFA+FP SV++LA+EKA+ELEDFS Sbjct: 803 ANFHVSAHIDASSRKLTMLYKVQPGACDQSFGIHVAEFANFPRSVVDLAREKASELEDFS 862
Query: 318 QASNKEEISKEEVGSKRKRVCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRL 139 + E+ SKRKR P+D G+ARAR+FLEDF +LPL++++ K A+ ++ ++ Sbjct: 863 PNAMILN-DGEKAASKRKRNFDPNDVSRGSARARQFLEDFTNLPLDKMDQKQALQQLSKM 921
Query: 138 RSELERDATGNVWLQQF 88 +++LERDA WLQQF Sbjct: 922 KTDLERDAVDCNWLQQF 938
>tr|A7PGN9|A7PGN9_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017626001 PE=4 SV=1 Length = 127
Score = 138 bits (347), Expect = 2e-31 Identities = 67/116 (57%), Positives = 88/116 (75%) Frame = -2
Query: 435 VEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFSQASNKEEISKEEVGSKRKRVC 256 VE GACDQSFGIHVAEFA+FPESV+ LA+EKA ELEDFS + ++VGSKRKR Sbjct: 11 VEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKVGSKRKRES 70
Query: 255 GPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIKRLRSELERDATGNVWLQQF 88 PDD GAARA +FL++F+ LPLE+++ K A+ ++ +L+++LE+DA WLQQF Sbjct: 71 SPDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 126
>tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family) (ISS) OS=Ostreococcus tauri GN=Ot10g02130 PE=3 SV=1 Length = 913
Score = 136 bits (343), Expect = 5e-31 Identities = 71/136 (52%), Positives = 97/136 (71%), Gaps = 2/136 (1%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 AN+HV+A +D SRKLTMLY+++ GACDQSFGIH AEFA FPE V+++A++KA ELEDFS Sbjct: 770 ANFHVEALIDQASRKLTMLYQIKPGACDQSFGIHCAEFARFPEEVLKVARQKAEELEDFS 829
Query: 318 QASNKEEISK-EEVGSKRKR-VCGPDDTMWGAARARKFLEDFASLPLEQLEYKGAVAEIK 145 + + ++ E +KR+R DD G RAR+FL DFA++PLE++ AVA + Sbjct: 830 KEGAERAVADVSEPNAKRQRGEEVSDDMARGVIRARQFLSDFAAVPLERMSPAEAVARAR 889
Query: 144 RLRSELERDATGNVWL 97 +L++ELE DA N WL Sbjct: 890 QLKAELESDAAHNSWL 905
>tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28688 PE=3 SV=1 Length = 936
Score = 134 bits (337), Expect = 2e-30 Identities = 72/141 (51%), Positives = 97/141 (68%), Gaps = 3/141 (2%) Frame = -2
Query: 498 ANYHVKAHLDDVSRKLTMLYKVEEGACDQSFGIHVAEFAHFPESVIELAKEKANELEDFS 319 +N+HV+A +D SRKLTMLY+++ GACDQSFGIH AEFA FPE V+++A+ KA+ELEDFS Sbjct: 793 SNFHVEALIDQESRKLTMLYQIKPGACDQSFGIHCAEFARFPEEVLKIARAKADELEDFS 852
Query: 318 QASNKEEISKEEVGSKRKRVCGP---DDTMWGAARARKFLEDFASLPLEQLEYKGAVAEI 148 + S E + KR+R P DD G RAR+FL DFA++PL+++ AVA Sbjct: 853 K-SGAERAVADISDPKRQRTDEPGVSDDMARGVVRARQFLSDFAAVPLDRMTPAEAVARA 911
Query: 147 KRLRSELERDATGNVWLQQFL 85 ++L+SELE DA + WL L Sbjct: 912 RQLKSELETDAKHSPWLLDVL 932
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