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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913392
Clone id YMU001_000029_G03
Library
Length 464
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000029_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTGACAATTGAGTTTGCATCACTAAGTGAAGAATGGAGTTTGCTTGGATGAGATTGG
GTGTTGGTGGATGAGGGTAATGAGAGGCTTAGTTGCAGCGTGGGATCGCCTTCGCCGTCG
TCATTGCCGAGCAATACTCGCTGTCTCTTATGGGTTGTTGCTCTGCTCTGGCCAATCCCA
CCACTTTTGGATTCACCTGGTTGTGGGTTCATTTGCTTCAAGTACATGACTCCTGACTGC
AGATCAATGCACCTTTCCCATCCTCTCGGGAGGGGCGGGAGGTCGGAGTCGATGCAGACT
TCTCCACTCTTGTTCACTGCAATCCAAGATATGGTTTCTCCCATTCTATTGTCCACAAAT
TGGCTAAATAACAGTGATAATAATTTGCTGATAAAAATCAGGATGGATGGATCGACACAA
GGTCCAAATCTTTTCAAGTGAGCCGCGGAGCGAACAGTGATGAT
■■Homology search results ■■ -
sp_hit_id Q4R1I4
Definition sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri
Align length 36
Score (bit) 32.7
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913392|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_G03.
         (464 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN...    33   0.79 
sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dicty...    31   2.3  
sp|Q9KTA6|SYQ_VIBCH Glutaminyl-tRNA synthetase OS=Vibrio cholera...    31   3.0  
sp|A5F2T1|SYQ_VIBC3 Glutaminyl-tRNA synthetase OS=Vibrio cholera...    31   3.0  
sp|Q8KG14|RPOC_CHLTE DNA-directed RNA polymerase subunit beta' O...    30   5.1  
sp|B3QQS1|RPOC_CHLP8 DNA-directed RNA polymerase subunit beta' O...    30   6.7  
sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rc...    30   6.7  

>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4
           PE=1 SV=1
          Length = 706

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +1

Query: 145 LLWVVALLWPIPPLLD-----SPGCGFIC-FKYMTP 234
           LLW+ +L+W +PPL       S G G  C F YMTP
Sbjct: 208 LLWIWSLVWALPPLFGWSAYVSEGFGTSCTFDYMTP 243


>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog
           OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1
          Length = 550

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 DCRSMHLSHPLGRGGRSESMQTSPLLFTAIQDMVSPILLSTNWLNNSDNN 384
           D +S  L  P  R   + S ++SP L ++   + SP L + N  NN++NN
Sbjct: 207 DIQSTSLKKPSARKSNTTSPKSSPFLSSSAGSIQSPPLNNNNNNNNNNNN 256


>sp|Q9KTA6|SYQ_VIBCH Glutaminyl-tRNA synthetase OS=Vibrio cholerae
           GN=glnS PE=3 SV=1
          Length = 556

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 332 ISWIAVNKSGEVCIDSDLPPLPRGWERCIDL-QSGVMYLKQMNPQ 201
           ++W+  + SGEVC  SD     + +E  I+L Q G+ Y+ ++ P+
Sbjct: 86  VTWLGFDWSGEVCYSSDY--FDKLYEYAIELIQKGLAYVDELTPE 128


>sp|A5F2T1|SYQ_VIBC3 Glutaminyl-tRNA synthetase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=glnS PE=3 SV=1
          Length = 556

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 332 ISWIAVNKSGEVCIDSDLPPLPRGWERCIDL-QSGVMYLKQMNPQ 201
           ++W+  + SGEVC  SD     + +E  I+L Q G+ Y+ ++ P+
Sbjct: 86  VTWLGFDWSGEVCYSSDY--FDKLYEYAIELIQKGLAYVDELTPE 128


>sp|Q8KG14|RPOC_CHLTE DNA-directed RNA polymerase subunit beta'
            OS=Chlorobium tepidum GN=rpoC PE=3 SV=1
          Length = 1490

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -1

Query: 263  GWERCIDLQSGVMYLKQMNPQPGESKSGGI---GQSRATTHKRQRVLLGNDDGE 111
            G+ + ID++ GV Y ++++PQ G ++   I    + RA+  +  RV + ++ GE
Sbjct: 1098 GFAKFIDIEKGVTYKEEVDPQTGFAQHTIINWRSKLRASETREPRVAIVSESGE 1151


>sp|B3QQS1|RPOC_CHLP8 DNA-directed RNA polymerase subunit beta'
            OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpoC PE=3
            SV=1
          Length = 1494

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -1

Query: 263  GWERCIDLQSGVMYLKQMNPQPGESKSGGI---GQSRATTHKRQRVLLGNDDGE 111
            G+ + ID++ GV Y ++++PQ G ++   I    + RA+  +  R+ + ++ GE
Sbjct: 1098 GFAKFIDIEKGVTYKEEVDPQTGFAQHTIINWRSKLRASETREPRIAIVSESGE 1151


>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2
           PE=2 SV=1
          Length = 503

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -1

Query: 323 IAVNKS--GEVCIDSDLPPLP--RGWERCIDLQSGVMYLKQMNPQPGESKSGGIGQSR 162
           I +NKS    VC  S++P +   +   + I L+  V  +KQMN    ES  GGI + R
Sbjct: 263 IHLNKSDVSAVCASSEMPAIALCQLETQLISLKRQVQNIKQMNSSLKESLEGGISEMR 320
tr_hit_id A9RXE5
Definition tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 40.8
E-value 0.034
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913392|Adiantum capillus-veneris mRNA, clone:
YMU001_000029_G03.
         (464 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.48 
tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  
tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed O...    34   3.1  
tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.1  
tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.1  
tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A2ZJ82|A2ZJ82_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.1  
tr|Q10QM7|Q10QM7_ORYSJ Os03g0191200 protein OS=Oryza sativa subs...    34   4.1  
tr|B7GAE9|B7GAE9_PHATR Predicted protein OS=Phaeodactylum tricor...    34   4.1  
tr|A2XDF1|A2XDF1_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|A9SJA3|A9SJA3_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|A4V8K9|A4V8K9_9MICC Putative TraG family protein OS=Arthrobac...    33   7.0  
tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whol...    33   7.0  
tr|A7Q9R8|A7Q9R8_VITVI Chromosome chr5 scaffold_67, whole genome...    33   7.0  
tr|Q1BFV2|Q1BFV2_MYCSS Alcohol dehydrogenase GroES-like protein ...    33   9.1  
tr|A3PSN7|A3PSN7_MYCSJ Alcohol dehydrogenase GroES domain protei...    33   9.1  
tr|A1U930|A1U930_MYCSK Alcohol dehydrogenase GroES domain protei...    33   9.1  
tr|Q09CG7|Q09CG7_STIAU Putative uncharacterized protein OS=Stigm...    33   9.1  
tr|Q53ME9|Q53ME9_ORYSJ Os11g0294400 protein OS=Oryza sativa subs...    33   9.1  
tr|A2ZDI6|A2ZDI6_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.1  

>tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71802 PE=4 SV=1
          Length = 454

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 305 GEVCID-SDLPPLPRGWERCIDLQSGVMYLKQMN 207
           G VC D    P LP GWE+C+DL+SG++Y K  N
Sbjct: 21  GYVCGDLQPEPQLPSGWEKCLDLKSGLIYFKDWN 54


>tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165908 PE=4 SV=1
          Length = 418

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -1

Query: 278 PPLPRGWERCIDLQSGVMYLKQMN 207
           P LP GWE+C+DL+SG++Y +  N
Sbjct: 91  PQLPSGWEKCLDLKSGLIYFRDWN 114


>tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_80180 PE=4 SV=1
          Length = 432

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 293 IDSDLPPLPRGWERCIDLQSGVMYLKQMNPQPGESKSG 180
           +DS   P+P GWE+C+DL++G ++L  +N    ES  G
Sbjct: 82  LDSGDAPVPSGWEKCLDLKTGKLFL--VNKNSDESSFG 117


>tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165909 PE=4 SV=1
          Length = 688

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 293 IDSDLPPLPRGWERCIDLQSGVMY 222
           +D    PLP GWE+C+DL++G +Y
Sbjct: 386 LDPSEEPLPSGWEKCLDLKTGKLY 409


>tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g13100 PE=4
           SV=2
          Length = 225

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 275 PLPRGWERCIDLQSGVMY 222
           PLP  WE+C+DLQSG MY
Sbjct: 78  PLPLDWEQCLDLQSGRMY 95


>tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 224

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 275 PLPRGWERCIDLQSGVMY 222
           PLP  WE+C+DLQSG MY
Sbjct: 86  PLPLDWEQCLDLQSGRMY 103


>tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 353 DNRMGETISWIAVNKSGEVCIDSDLPPLPRGWERCIDLQSGVMY 222
           D+  GE +  I +N         D  PLP  W+RC+D++SG +Y
Sbjct: 57  DDDRGEVVDGIELN--------FDAAPLPPEWQRCLDIKSGQIY 92


>tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171133 PE=4 SV=1
          Length = 932

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 314 NKSGEVC-IDSDLPPLPRGWERCIDLQSGVMYLKQMNPQPGESKSGGIGQSRATTHKRQR 138
           N S E   +D D  PLP  WE+C+DL++G +Y          +KS G+  S      +QR
Sbjct: 599 NSSAEFLELDPD-QPLPADWEKCLDLKTGELYF--------VNKSTGVRTSEDPRKVQQR 649

Query: 137 VL 132
           V+
Sbjct: 650 VV 651


>tr|A2ZJ82|A2ZJ82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37886 PE=4 SV=1
          Length = 223

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 275 PLPRGWERCIDLQSGVMY 222
           PLP  WE+C+DLQSG MY
Sbjct: 78  PLPLDWEQCLDLQSGRMY 95


>tr|Q10QM7|Q10QM7_ORYSJ Os03g0191200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0191200 PE=2 SV=1
          Length = 244

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -1

Query: 323 IAVNKSGEVCIDS--DLPPLPRGWERCIDLQSGVMY 222
           +   +SGEV I+   D  PLP  W+RC+D++SG ++
Sbjct: 46  VGEGESGEVGIELCFDAAPLPLEWQRCLDIKSGQIH 81