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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913415
Clone id YMU001_000030_A04
Library
Length 620
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTTTCGAACTGATACTCAGATTCGTCATCTGTCTCACCCATAACCCTTAGCATGCAGT
AGGGGACTACGTCATACCCATTCTCATCGCAAAATTTTGTTGGTGTGGTCTCATTAACAC
AGACATCCAAAGTAGCCAATATCTGAGTCCACTCTAGCGGTTCTAACGCCTCTTCCGGAA
AAGGTTCTCTTATGTAAGCATTATCTTCTAAGACCCTCTCTAAGGAATTCTCATTTCTCC
CAAAGTCACTACACTCCGATGCTCCGCACATCCATATTTCTTTCTTTTTGCCCATCCACG
GATGGTCTGTTGATCCACTTTGTGTTGCAGAATCAAAATCTTCCACGGGCGTTCTAGTTA
CATCTTGGTAACTATGATTTCTCATATTTATACGTGTTGTGGTTTCAGCATGTCTCAAGT
ATAGATAATCATAACCCCAATCTTGTACCATCTTGAGTTGTCTCATGAATGGTCTTCCAA
GGATGATTTCATAGTTATTTTGCTTGCCAAAGTCAACTATGGCAAAAGTATGCGCATACT
CTATACCACAAGAAGACACCACTATCGCTTCTAGCAATCCCATGGGTCTTTCCACATGCC
CATCTGCTAACTGTAATTTG
■■Homology search results ■■ -
sp_hit_id Q6FL17
Definition sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida glabrata
Align length 52
Score (bit) 31.2
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913415|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_A04.
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida ...    31   4.5  
sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vande...    31   4.5  
sp|Q5RJH6|SMG7_MOUSE Protein SMG7 OS=Mus musculus GN=Smg7 PE=2 SV=1    31   4.5  
sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2    31   5.9  
sp|A2CC53|TRUA_PROM3 tRNA pseudouridine synthase A OS=Prochloroc...    30   7.7  
sp|O62830|PPM1B_BOVIN Protein phosphatase 1B OS=Bos taurus GN=PP...    30   7.7  

>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida
           glabrata GN=SUB2 PE=3 SV=1
          Length = 439

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 148 STLAVLTPLPEKV---LLCKHYLLRPSLRNSHFSQSHYTPMLRTSIFLSFCP 294
           STL  L P+P +V   ++C    L   +RN +   S Y P +RT++F    P
Sbjct: 112 STLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTP 163


>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=SUB2-2 PE=3 SV=1
          Length = 442

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 148 STLAVLTPLPEKV---LLCKHYLLRPSLRNSHFSQSHYTPMLRTSIFLSFCPST 300
           STL  L P+P +V   ++C    L   +RN +   S Y P ++T++F    P T
Sbjct: 115 STLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPIT 168


>sp|Q5RJH6|SMG7_MOUSE Protein SMG7 OS=Mus musculus GN=Smg7 PE=2 SV=1
          Length = 1138

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 124 HPK*PISESTLAVLTPLPEKVLLCKHYLLRPSLRNSHFSQSH 249
           HP+     +T A  TPLPE+  L     LRPS RN  FS+ H
Sbjct: 400 HPREDDLSNTNA--TPLPEEFELQGFLALRPSFRNLDFSKGH 439


>sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2
          Length = 1137

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 166 TPLPEKVLLCKHYLLRPSLRNSHFSQSH 249
           TPLPE+  L     LRPS RN  FS+ H
Sbjct: 413 TPLPEEFELQGFLALRPSFRNLDFSKGH 440


>sp|A2CC53|TRUA_PROM3 tRNA pseudouridine synthase A
           OS=Prochlorococcus marinus (strain MIT 9303) GN=truA
           PE=3 SV=1
          Length = 295

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 493 SYFACQSQLWQKYAHTLYHKKTPLSLLAIPWVFPHAHL 606
           S+ AC S  +++Y +T+Y+ + P +L   PW +   H+
Sbjct: 113 SWHACHSATYRRYRYTIYNGRRP-NLFLTPWSWHRYHV 149


>sp|O62830|PPM1B_BOVIN Protein phosphatase 1B OS=Bos taurus GN=PPM1B
           PE=2 SV=2
          Length = 484

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -2

Query: 448 VQDWGYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQSGSTDHPWMGKKKEIWM 269
           ++DW +  +Y  HA +        H  + +T    EDF +A +SGS   P +   K    
Sbjct: 50  LEDWSFFAVYDGHAGSRVANYCSTHLLEHITNN--EDFRAAGKSGSALEPSVENVKNGIR 107

Query: 268 CGASECSDFGRNENSLERVLE 206
            G  +  ++ RN + L   ++
Sbjct: 108 TGFLKIDEYMRNFSDLRNGMD 128
tr_hit_id A5B4Q4
Definition tr|A5B4Q4|A5B4Q4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 115
Score (bit) 45.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913415|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_A04.
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B4Q4|A5B4Q4_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|Q9SHR4|Q9SHR4_ARATH F28L22.4 protein OS=Arabidopsis thaliana ...    44   0.010
tr|Q9LPB9|Q9LPB9_ARATH T32E20.1 OS=Arabidopsis thaliana PE=4 SV=1      44   0.010
tr|Q9M106|Q9M106_ARATH Putative transposon protein OS=Arabidopsi...    42   0.022
tr|O81509|O81509_ARATH T7M24.3 protein OS=Arabidopsis thaliana G...    42   0.022
tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana G...    42   0.022
tr|A5AZ88|A5AZ88_VITVI Putative uncharacterized protein OS=Vitis...    42   0.022
tr|Q9C8Q6|Q9C8Q6_ARATH Athila ORF 1, putative; 49840-46364 OS=Ar...    42   0.029
tr|O22102|O22102_VICFA Retrotransposon-like gene (Fragment) OS=V...    42   0.038
tr|A5C1P2|A5C1P2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.038
tr|A5AZT3|A5AZT3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.038
tr|A5C0G4|A5C0G4_VITVI Putative uncharacterized protein OS=Vitis...    41   0.050
tr|A5BTE2|A5BTE2_VITVI Putative uncharacterized protein OS=Vitis...    41   0.050
tr|A5AWB6|A5AWB6_VITVI Putative uncharacterized protein OS=Vitis...    41   0.050
tr|Q9C8Q7|Q9C8Q7_ARATH Athila ORF 1, putative; 43045-40843 OS=Ar...    41   0.065
tr|A5C7E7|A5C7E7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.065
tr|A5BXQ2|A5BXQ2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.085
tr|A5B1Y9|A5B1Y9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|A5AWS0|A5AWS0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|A5AWH0|A5AWH0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.14 
tr|A5ARJ7|A5ARJ7_VITVI Putative uncharacterized protein (Fragmen...    40   0.14 
tr|A5AM60|A5AM60_VITVI Putative uncharacterized protein OS=Vitis...    40   0.14 
tr|A5AGJ4|A5AGJ4_VITVI Putative uncharacterized protein OS=Vitis...    40   0.14 
tr|A5BWM0|A5BWM0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|A5BKS0|A5BKS0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|A5B6C4|A5B6C4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|A5AHE2|A5AHE2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|A5AG68|A5AG68_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|Q9SKR9|Q9SKR9_ARATH Putative Athila retroelement ORF1 protein...    39   0.25 
tr|A5C3F3|A5C3F3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.25 

>tr|A5B4Q4|A5B4Q4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004922 PE=4 SV=1
          Length = 1595

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVD---FGKQNNY-EIILGRPFMRQLKM 449
           L LAD  V+ P G++E ++V      Y   F ++D   F K++NY  IILGRPF+     
Sbjct: 264 LSLADRSVKIPRGIIEDVLVQVDNFYYLVDFVVLDTDPFFKESNYVPIILGRPFLATSNA 323

Query: 448 VQDWGYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQSGSTDHPWMGKK 284
           + +     + L     T  +N+   S + +  TP E+ D A ++   + P +  K
Sbjct: 324 IINCRNGLMQLTFGNMTLELNIFYMSKKLI--TPEEEEDEAQEATKEEIPKLNLK 376


>tr|Q9SHR4|Q9SHR4_ARATH F28L22.4 protein OS=Arabidopsis thaliana
           GN=F28L22.4 PE=4 SV=1
          Length = 478

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           L LADG V  P GL+E + V    +E    F ++D  ++    +ILGRPF+     V D 
Sbjct: 210 LLLADGSVAHPHGLIENLPVKIENVEIPTDFVVLDVDEKGKDPLILGRPFLASAGAVIDV 269

Query: 436 GYDYLYLRHAETTTRINMRNHSYQDVT-----RTPVEDFDSATQSGS 311
               + L       + ++R  S++  T          D D  T++G+
Sbjct: 270 RNGKINLNLEGIKMKFDIRESSWKSTTGVQNFGVQNMDVDEETEAGT 316


>tr|Q9LPB9|Q9LPB9_ARATH T32E20.1 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 590

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           L LADG V  P GL+E + V    +E    F ++D  ++    +ILGRPF+     V D 
Sbjct: 305 LLLADGSVAHPHGLIENLPVKIENVEIPTDFVVLDVDEKGKDPLILGRPFLASAGAVIDV 364

Query: 436 GYDYLYLRHAETTTRINMRNHSYQDVT-----RTPVEDFDSATQSGS 311
               + L       + ++R  S++  T          D D  T++G+
Sbjct: 365 RNGKINLNLEGIKMKFDIRESSWKSTTGVQNFGVQNMDVDEETEAGT 411


>tr|Q9M106|Q9M106_ARATH Putative transposon protein OS=Arabidopsis
           thaliana GN=AT4g03850 PE=2 SV=1
          Length = 334

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 31/113 (27%), Positives = 51/113 (45%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           L LAD    +P G+L+ + V   G+E    F ++D   ++   +ILGRPF+  +  V D 
Sbjct: 121 LILADRASRKPFGMLKDLPVMINGVEVPIDFVVLDMEVEHKDPLILGRPFLASVGAVID- 179

Query: 436 GYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQSGSTDHPWMGKKKE 278
                 +R  + +  +        D+ +TP E  +    SG  D    G+K E
Sbjct: 180 ------VREGKISLNLGKHIMLQFDINKTPQESKEDEKTSGD-DRVIPGEKYE 225


>tr|O81509|O81509_ARATH T7M24.3 protein OS=Arabidopsis thaliana
           GN=T7M24.3 PE=4 SV=1
          Length = 1120

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 31/113 (27%), Positives = 51/113 (45%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           L LAD    +P G+L+ + V   G+E    F ++D   ++   +ILGRPF+  +  V D 
Sbjct: 239 LILADRASRKPFGMLKDLPVMINGVEVPIDFVVLDMEVEHKDPLILGRPFLASVGAVID- 297

Query: 436 GYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQSGSTDHPWMGKKKE 278
                 +R  + +  +        D+ +TP E  +    SG  D    G+K E
Sbjct: 298 ------VREGKISLNLGKHIMLQFDINKTPQESKEDEKTSGD-DRVIPGEKYE 343


>tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana
           GN=F7N22.7 PE=4 SV=1
          Length = 360

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 26/100 (26%), Positives = 45/100 (45%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           L LAD    +P G+L+ + V   G+E    F ++D   ++   +ILGRPF+  +  V D 
Sbjct: 249 LILADRSYRKPFGMLKDLPVMINGVEVPTNFVVLDMEVEHKDPLILGRPFLASVGDVVD- 307

Query: 436 GYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQS 317
                 +R  + +  +   N    D+ + P E  +    S
Sbjct: 308 ------VREGKISLNLGKHNKLQFDINKIPQESTEDEKTS 341


>tr|A5AZ88|A5AZ88_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037041 PE=4 SV=1
          Length = 1048

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           LQLAD  ++ P G++E ++V      +   F ++D  +  +  +ILGRPF+   + + D+
Sbjct: 399 LQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDF 458

Query: 436 GYDYLYLRHAETTTRINM 383
               L LR  +     N+
Sbjct: 459 HQGKLILRVQDEQVTFNV 476


>tr|Q9C8Q6|Q9C8Q6_ARATH Athila ORF 1, putative; 49840-46364
           OS=Arabidopsis thaliana GN=T4I21.12 PE=4 SV=1
          Length = 595

 Score = 42.0 bits (97), Expect = 0.029
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQD 440
           L LAD    RP GLLE + V   G+E    F +++  +++N   ILGRPF+    +V D
Sbjct: 287 LILADRTSRRPFGLLEDVPVMINGVEVPIDFVVLEMDEESNDPQILGRPFLASAGVVID 345


>tr|O22102|O22102_VICFA Retrotransposon-like gene (Fragment)
           OS=Vicia faba PE=2 SV=1
          Length = 298

 Score = 41.6 bits (96), Expect = 0.038
 Identities = 22/80 (27%), Positives = 42/80 (52%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVDFGKQNNYEIILGRPFMRQLKMVQDW 437
           LQ AD  V+RP G++E ++V      +   F +++  +     +ILGRPF+   + + D 
Sbjct: 48  LQFADHSVKRPYGIVEYVLVKIDKFVFLVDFVVLEMPEDEKITLILGRPFLETERSLIDI 107

Query: 436 GYDYLYLRHAETTTRINMRN 377
               + L+  +   +I++RN
Sbjct: 108 EEGTMNLKVYDEELKIDVRN 127


>tr|A5C1P2|A5C1P2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020452 PE=4 SV=1
          Length = 1027

 Score = 41.6 bits (96), Expect = 0.038
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = -2

Query: 616 LQLADGHVERPMGLLEAIVVSSCGIEYAHTFAIVD---FGKQNNY-EIILGRPFMRQLKM 449
           L LAD  V+ P G++E ++V      Y   F ++D   F K+ NY  IILGRPF+     
Sbjct: 138 LSLADRLVKIPRGIIEDVLVQVDNFYYPVDFVVLDTNPFFKEANYVPIILGRPFLTTSNA 197

Query: 448 VQDWGYDYLYLRHAETTTRINMRNHSYQDVTRTPVEDFDSATQS 317
           + +   + + L     T  +N+   S + +T    E  +   +S
Sbjct: 198 IINCRNELMQLTFGNMTLELNIFYMSKKXITXKKEEGPEELNES 241