BP913425
Clone id YMU001_000030_B02
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGCGTTAAAGTGGACGCGTATGTGTGAGTCTGGAAGGAAATGTTCGGAAAAATAAAATG
TATTACAATCATGCCGCTACGGTGGTGTAAAACTGTGGAGGATCACGCTCAAATTTGGGA
GTATGTATTGTCACCTTGCATTTGATGGGCCAAAAGGCAAACACACGCATGCCGTCTTTC
AAAGAGGAATTGTGTTACTCAATGCACCCTTATGATTGAGGTTGTTGTTTATGTAGTCTT
GTGGATGACTACCATGAGTTTGCATGATGTCTATTTGGGAGATTTCTATGTGGTATATAC
TATACTTGGACAACAAAATCACCACATTACATTCATACATACACTGAAGATTGTATATTA
TACAAAGAAAGAGAGATTGTACAAGTCATGAATGAGTGCTAGGAATAAGAGATTGAAGCC
ATTGAGGTTGTGCATACTCTAGCTAGGATACCTTCTCAAAGGTTGGCATGTGAACAAGTC
TTGATCATGGTTAAGAGTGCAAATCGGCTGAATTATCCATGGTTGCAGATAGTTGTATAC
TATGTAT
■■Homology search results ■■ -
sp_hit_id Q9HCL0
Definition sp|Q9HCL0|PCD18_HUMAN Protocadherin-18 OS=Homo sapiens
Align length 58
Score (bit) 31.2
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913425|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_B02.
(547 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9HCL0|PCD18_HUMAN Protocadherin-18 OS=Homo sapiens GN=PCDH18... 31 3.4
sp|A7MB46|PCD18_BOVIN Protocadherin-18 OS=Bos taurus GN=PCDH18 P... 31 3.4
sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus lae... 30 5.9
sp|A0JMW6|T214A_XENLA Transmembrane protein 214-A OS=Xenopus lae... 30 7.7
sp|Q8VHR0|PCD18_MOUSE Protocadherin 18 OS=Mus musculus GN=Pcdh18... 30 7.7

>sp|Q9HCL0|PCD18_HUMAN Protocadherin-18 OS=Homo sapiens GN=PCDH18
PE=2 SV=3
Length = 1135

Score = 31.2 bits (69), Expect = 3.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1

Query: 352 NLQCMYECNVVILLSKY-SIYHIEISQIDIMQTHGSHPQDYINNNLNHKGALSNTIPL 182
NL C E +V+ L +++ ++HIE+ +DI + I ++ A+ IPL
Sbjct: 101 NLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPL 158


>sp|A7MB46|PCD18_BOVIN Protocadherin-18 OS=Bos taurus GN=PCDH18 PE=2
SV=1
Length = 1134

Score = 31.2 bits (69), Expect = 3.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1

Query: 352 NLQCMYECNVVILLSKY-SIYHIEISQIDIMQTHGSHPQDYINNNLNHKGALSNTIPL 182
NL C E +V+ L +++ ++HIE+ +DI + I ++ A+ IPL
Sbjct: 101 NLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPL 158


>sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus laevis
GN=tmem214-B PE=2 SV=1
Length = 679

Score = 30.4 bits (67), Expect = 5.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1

Query: 238 LVDDYHEFA*CLFGRFLCGIYYTWTTKSPHYIHTYTEDCILYKEREI 378
L+ H++ CL + L GI + K+PH + + CI +E+
Sbjct: 153 LIQQSHDYPYCLINKELKGIVRSLLAKAPHVLDVMVDHCIFSMLQEL 199


>sp|A0JMW6|T214A_XENLA Transmembrane protein 214-A OS=Xenopus laevis
GN=tmem214-A PE=2 SV=1
Length = 681

Score = 30.0 bits (66), Expect = 7.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1

Query: 238 LVDDYHEFA*CLFGRFLCGIYYTWTTKSPHYIHTYTEDCILYKEREI 378
L+ H++ CL + L GI + K+PH + + CI +E+
Sbjct: 155 LIQQSHDYPYCLVNKELKGIVRSLLAKAPHVLDVMVDHCIFSMFQEL 201


>sp|Q8VHR0|PCD18_MOUSE Protocadherin 18 OS=Mus musculus GN=Pcdh18
PE=1 SV=2
Length = 1134

Score = 30.0 bits (66), Expect = 7.7
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1

Query: 352 NLQCMYECNVVILLSKY-SIYHIEISQIDIMQTHGSHPQDYINNNLNHKGALSNTIPL 182
NL C E +V+ L +++ ++HIE+ +DI + I ++ A+ IPL
Sbjct: 101 NLNCSIEFDVLTLPTEHLQLFHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPL 158


tr_hit_id Q91GH3
Definition tr|Q91GH3|Q91GH3_NPVEP Putative uncharacterized protein OS=Epiphyas postvittana nucleopolyhedrovirus
Align length 63
Score (bit) 33.1
E-value 9.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913425|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_B02.
(547 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q91GH3|Q91GH3_NPVEP Putative uncharacterized protein OS=Epiph... 33 9.8

>tr|Q91GH3|Q91GH3_NPVEP Putative uncharacterized protein OS=Epiphyas
postvittana nucleopolyhedrovirus PE=4 SV=1
Length = 257

Score = 33.1 bits (74), Expect = 9.8
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -1

Query: 373 LFLCIIYNLQCMYECNVVILLSKYSIYHIEISQIDIMQTHGSHPQDYINNNLNHKGALSN 194
LF I + L C + + + Y I+HIE+ ++ + + H + P ++N+ A+ +
Sbjct: 145 LFYNIFFILHCAMCRDHYMNVKGYIIFHIELIELALEREHHNLPITFVNSYCEETQAIDS 204

Query: 193 TIP 185
T+P
Sbjct: 205 TLP 207