BP913430
Clone id YMU001_000030_B08
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTGAATCACAAAAAGGCAGAAGGTATAAATTAATTACACGACTAAAGTCA
CTACTTTGCCATTACCAAAGAACAGAGGATACGATAGGCAAGTAACTACTACTTTCGGTG
AGGACAAAACGGGTATGCCCAATCTGCCATGGACTAGGGGAAAATGTCTTCACAGCATCC
CAACAGCAACAATGCCAGCCCACAAACAATCCAGCTGTGCTTAACTTTTAAAAACTTAAT
TTGTTTCCTATCACAAGTAGACTGGGGAAAACCCACTTGACACCCACAAATCACTTCCTC
ACCTAAAAGTGCTGCCCACTGTCATGCACAGCACTGCTACCTTGAATAAGGTGAGCGACA
TGGAGACCTAAACCTGGAATAGCCACGCCTTGGGCTCCGATAGGGTGAATAAGCCGGTGA
TCTACCACGATCTCGACCGTGCCTCTGGCTGCGATATGGAGAATACTCTGGAGAATAGTC
TCGGCGCCGGGAACGATATGAGTCACGTGGTGGCTCATAATGTCTCCTGCGATCACCATA
CCCTGGCCTCCTGAGCCCCAAGTATCTTC
■■Homology search results ■■ -
sp_hit_id Q98EE1
Definition sp|Q98EE1|TRMD_RHILO tRNA (guanine-N(1)-)-methyltransferase OS=Rhizobium loti
Align length 83
Score (bit) 30.0
E-value 8.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913430|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_B08.
(557 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q98EE1|TRMD_RHILO tRNA (guanine-N(1)-)-methyltransferase OS=R... 30 8.0

>sp|Q98EE1|TRMD_RHILO tRNA (guanine-N(1)-)-methyltransferase
OS=Rhizobium loti GN=trmD PE=3 SV=1
Length = 232

Score = 30.0 bits (66), Expect = 8.0
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Frame = -1

Query: 557 EDTWGSGGQGMVIAGDIMSHHVTHIVPGAET------------ILQSILHIAARGTVEIV 414
+DT GG GMV+ D+++ + H P +T + Q+ + A G ++
Sbjct: 52 DDTPAGGGAGMVMRADVLARAIDHASPPGDTRPRLLMSPRGKPLTQARVRELAAGPGAVI 111

Query: 413 -------VDHRLIHPIGAQGVAI 366
VD RLI G + V+I
Sbjct: 112 LCGRFEGVDQRLIEVRGLEEVSI 134


tr_hit_id A1JHV6
Definition tr|A1JHV6|A1JHV6_YERE8 Guanosine-3',5'-bisbis(Diphosphate) 3'-pyrophosphydrolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 61
Score (bit) 35.4
E-value 2.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913430|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_B08.
(557 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A1JHV6|A1JHV6_YERE8 Guanosine-3',5'-bisbis(Diphosphate) 3'-py... 35 2.1
tr|B0WCI9|B0WCI9_CULQU Homeobox protein cdx OS=Culex quinquefasc... 35 2.1
tr|B1Y5J9|B1Y5J9_LEPCP Hydrogenase maturation protein HypF OS=Le... 34 4.6
tr|B1Y0N9|B1Y0N9_LEPCP Outer membrane adhesin like proteiin OS=L... 34 4.6
tr|Q9PBS8|Q9PBS8_XYLFA DNA primase OS=Xylella fastidiosa GN=XF_2... 34 6.1
tr|Q0KKS9|Q0KKS9_9STAP DnaJ protein (Fragment) OS=Staphylococcus... 34 6.1
tr|A3JS72|A3JS72_9RHOB Putative uncharacterized protein OS=Rhodo... 34 6.1
tr|A5KB78|A5KB78_PLAVI Putative uncharacterized protein OS=Plasm... 34 6.1
tr|Q3RAK2|Q3RAK2_XYLFA Toprim subdomain OS=Xylella fastidiosa An... 33 7.9

>tr|A1JHV6|A1JHV6_YERE8 Guanosine-3',5'-bisbis(Diphosphate)
3'-pyrophosphydrolase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=spoT PE=3
SV=1
Length = 700

Score = 35.4 bits (80), Expect = 2.1
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +3

Query: 369 SHALGSDR----VNKPVIYHDLDRASGCDMENTLENSLGAGNDMSHVVAHNVSCDHHTLA 536
+HALG+ R + + I H+LDR +++ L +G GN MS VVA N+ D TLA
Sbjct: 491 NHALGNGRKLSDIPEENIKHELDRMKLATLDDLLAE-IGLGNAMSVVVAKNLLGDPSTLA 549

Query: 537 S 539
+
Sbjct: 550 T 550


>tr|B0WCI9|B0WCI9_CULQU Homeobox protein cdx OS=Culex
quinquefasciatus GN=CpipJ_CPIJ004813 PE=3 SV=1
Length = 378

Score = 35.4 bits (80), Expect = 2.1
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1

Query: 500 HHVTHIVPGAETILQSILHIAARGTVEIVVDHRLIHPIGAQGVAIPGLGLHVAH 339
HH H+ G +++ S++ I + + + H +HP+ A + + +GLH AH
Sbjct: 296 HHAQHLGGGGQSMSSSLMDIKPKLEPSLHLSH--LHPMSAMSMGMSSMGLHPAH 347


>tr|B1Y5J9|B1Y5J9_LEPCP Hydrogenase maturation protein HypF
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=Lcho_2446 PE=4 SV=1
Length = 395

Score = 34.3 bits (77), Expect = 4.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3

Query: 378 LGSDRVNKPVIYHDLDRASGCD-MENTLENSLGAGNDMSHVVAHNVSCDHHT 530
L DR ++ DL A+ CD ++ ++E LGAG+ VAH++ D H+
Sbjct: 29 LDGDRARWSALHGDLGDAAACDALQVSVETLLGAGDGPLQAVAHDLHPDFHS 80


>tr|B1Y0N9|B1Y0N9_LEPCP Outer membrane adhesin like proteiin
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=Lcho_0747 PE=4 SV=1
Length = 1598

Score = 34.3 bits (77), Expect = 4.6
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -1

Query: 554 DTWGSGGQGMVIAGDIMSHHVTHI--VPGAETILQSILHIAARGTVEIVVDHRLIHPIGA 381
D SGGQ +V GD + V H+ GAE + S I A G E+ + L H
Sbjct: 716 DALSSGGQAIVWTGDGSTTLVGHVGTADGAEALRVS---IDAGGAYEVTLSRPLDHGAAG 772

Query: 380 QGVAIPGLGLHVAHLIQGSSA 318
+ G+G+H++ + G A
Sbjct: 773 EDRLSLGVGVHLSDGVHGRDA 793


>tr|Q9PBS8|Q9PBS8_XYLFA DNA primase OS=Xylella fastidiosa GN=XF_2061
PE=4 SV=1
Length = 1371

Score = 33.9 bits (76), Expect = 6.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1

Query: 479 PGAETILQSILHIAARGTVEIV-VDHRLIHPIGAQGVAIPGLGLHVAHLIQGS--SAVHD 309
P A+ ++LH T + +D ++HP G++G A L +A +I G HD
Sbjct: 409 PSADNYYATLLHELGHWTGHSLRLDRDMLHPFGSEGYAKEELRAEIASMILGDELGIGHD 468

Query: 308 SGQH 297
GQH
Sbjct: 469 PGQH 472


>tr|Q0KKS9|Q0KKS9_9STAP DnaJ protein (Fragment) OS=Staphylococcus
piscifermentans GN=dnaJ PE=3 SV=1
Length = 294

Score = 33.9 bits (76), Expect = 6.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1

Query: 37 RLKSLLCHYQRTEDTIG---K*LLLSVRTKRVCPICHGLGENV 156
R K CHY + +L VRT++VCP+C+G GE +
Sbjct: 150 RSKKKTCHYCNGSGHVSVEQNTILGRVRTEKVCPVCNGTGEEI 192


>tr|A3JS72|A3JS72_9RHOB Putative uncharacterized protein
OS=Rhodobacterales bacterium HTCC2150 GN=RB2150_01419
PE=4 SV=1
Length = 396

Score = 33.9 bits (76), Expect = 6.1
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1

Query: 542 SGGQGMVIAGDIMSHHVTHIVPGAETILQSILHIAARGTVEIVVDHRLIHPIGAQGVAIP 363
SG G V+ IM+ ++ P ET +L + G + + + P G QG
Sbjct: 303 SGADGTVLFEKIMNAGEKYVAPNTETA--PLLKVGESGAIYFAIGDKTYGPAGTQGAVSS 360

Query: 362 GLGLHVAHLIQ 330
+ L A L+Q
Sbjct: 361 NIALDQASLVQ 371


>tr|A5KB78|A5KB78_PLAVI Putative uncharacterized protein
OS=Plasmodium vivax GN=PVX_119430 PE=4 SV=1
Length = 761

Score = 33.9 bits (76), Expect = 6.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1

Query: 398 IHPIGAQGVAIPGLGLH-VAHLIQG--SSAVHDSGQH 297
IHP+G GV IP +G+H V H G S VH G H
Sbjct: 117 IHPVGVHGVGIPPVGIHSVGHPPVGVHSPGVHSVGMH 153


>tr|Q3RAK2|Q3RAK2_XYLFA Toprim subdomain OS=Xylella fastidiosa Ann-1
GN=XfasoDRAFT_4259 PE=4 SV=1
Length = 801

Score = 33.5 bits (75), Expect = 7.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1

Query: 479 PGAETILQSILHIAARGTVEIV-VDHRLIHPIGAQGVAIPGLGLHVAHLIQGS--SAVHD 309
P A+ ++LH T + +D ++HP G++G A L +A +I G HD
Sbjct: 8 PSADNYYATLLHELGHWTGHSLRLDRDMLHPFGSEGYAKEELRAEIASMILGDELGIGHD 67

Query: 308 SGQH 297
GQH
Sbjct: 68 LGQH 71