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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913435
Clone id YMU001_000030_C02
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAGGAATTCGCGGCCGCAGGAATTTTTTTTTTTTTTTTACTAAACACACTGCAGT
TCTCATTATGAATGGGTAAAGCTCTACTAGATAGTTTTCATCCAATTCGTAACGCCGTTC
ATTCAAAGCCTCTTCTTGCAAGCTCCATTATGTCACATGAACGGTTTAGTAGACAATCGA
ATGAATTCATCAAAGTCTGGATGCACGTGCAAGGCTTTCTGGCACTCCTTCTAGACTTCC
ATGCAAGAGTTCCCGAGCTTCCCACTTGAACACTTCTTCCTTTAATGCTCTGTAGACACC
GCGATCATAATTTCTGGAAGCTAATTCAGATGCTTTCTTGATAGCTGTTTCCCGGGTGGA
GTCTACATCAGAGCACGCCCCATGTATTATTCCTGCAACGGCTGCAGTCTTCCCTACATA
CCGATGAGCCGTTAGCACTGCTTCATGGTAGGTTGGCACTGGGAGCTTGCTCTTGATGAT
TGCATTCATACCAGGAGTTAAAGGAAGCTTGATTTCTCATTCAACATTATAAACCCTCTG
TCGCTT
■■Homology search results ■■ -
sp_hit_id A0JXZ9
Definition sp|A0JXZ9|ILVD_ARTS2 Dihydroxy-acid dehydratase OS=Arthrobacter sp. (strain FB24)
Align length 55
Score (bit) 30.8
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913435|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_C02.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0JXZ9|ILVD_ARTS2 Dihydroxy-acid dehydratase OS=Arthrobacter ...    31   3.7  
sp|Q5Z0M2|ILVD1_NOCFA Dihydroxy-acid dehydratase 1 OS=Nocardia f...    31   3.7  
sp|A8MLD3|RPOC_ALKOO DNA-directed RNA polymerase subunit beta' O...    30   4.9  
sp|Q17X65|NADE_HELAH NH(3)-dependent NAD(+) synthetase OS=Helico...    30   4.9  
sp|A3PSS2|ILVD_MYCSJ Dihydroxy-acid dehydratase OS=Mycobacterium...    30   4.9  
sp|Q06FX0|RPOC1_PELHO DNA-directed RNA polymerase subunit beta' ...    30   6.4  
sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN...    30   8.3  

>sp|A0JXZ9|ILVD_ARTS2 Dihydroxy-acid dehydratase OS=Arthrobacter sp.
           (strain FB24) GN=ilvD PE=3 SV=1
          Length = 573

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 353 AGIIHGACSDVDSTRETAIKKASELASRNYDRGVYRALKEEVFKWEARELLHGSL 189
           AG++HG C  V  T +T  +  + +   + D  + RAL   + K     +LHGS+
Sbjct: 351 AGLLHGDCLTV--TGKTLAENLASINPPDLDGKILRALDNPIHKTGGITILHGSM 403


>sp|Q5Z0M2|ILVD1_NOCFA Dihydroxy-acid dehydratase 1 OS=Nocardia
           farcinica GN=ilvD1 PE=3 SV=1
          Length = 568

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 368 KTAAVAGIIHGACSDVDSTRETAIKKASELASRNYDRGVYRALKEEVFKWEARELLHGSL 189
           KT   AG++HG C  V  T  T  +  + +A  + D  V RAL + +       +L GSL
Sbjct: 341 KTLLDAGLLHGDCLTV--TGRTVAENLAHIAPPDPDGKVVRALNDPIHPTGGITILSGSL 398


>sp|A8MLD3|RPOC_ALKOO DNA-directed RNA polymerase subunit beta'
           OS=Alkaliphilus oremlandii (strain OhILAs) GN=rpoC PE=3
           SV=1
          Length = 1179

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 332 CSDVDSTRETAIKKASELASRNYDRGVYRALKEEVFKWEARELLHGSLEGVPESLA 165
           C   + +   A+K  +E+    YDR V R   EEV   E  E++ G  E + E +A
Sbjct: 791 CGSQEGSNIKALKDGNEVIEELYDRIVGRYTLEEVIHPETGEVMIGKNEMILEDMA 846


>sp|Q17X65|NADE_HELAH NH(3)-dependent NAD(+) synthetase
           OS=Helicobacter acinonychis (strain Sheeba) GN=nadE PE=3
           SV=1
          Length = 260

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/63 (36%), Positives = 29/63 (46%)
 Frame = -1

Query: 314 TRETAIKKASELASRNYDRGVYRALKEEVFKWEARELLHGSLEGVPESLARASRL**IHS 135
           T++   KK     S   D  V   L ++VFK  A  LL  SL  +PES + A  L    S
Sbjct: 20  TQKRGFKKVVYGLSGGLDSAVVGVLSQKVFKENAHALLMPSLVSMPESKSDALDLCETFS 79

Query: 134 IVY 126
           I Y
Sbjct: 80  IPY 82


>sp|A3PSS2|ILVD_MYCSJ Dihydroxy-acid dehydratase OS=Mycobacterium
           sp. (strain JLS) GN=ilvD PE=3 SV=1
          Length = 580

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 374 VGKTAAVAGIIHGACSDVDSTRETAIKKASELASRNYDRGVYRALKEEVFKWEARELLHG 195
           V K    AG++HG C  V  T ET  +  + +   + D  V RA+   +       +LHG
Sbjct: 351 VMKALLDAGLMHGDCLTV--TGETMAENLAHIEPPDPDGKVLRAMNNPIHPTGGITILHG 408

Query: 194 SL 189
           SL
Sbjct: 409 SL 410


>sp|Q06FX0|RPOC1_PELHO DNA-directed RNA polymerase subunit beta'
           OS=Pelargonium hortorum GN=rpoC1 PE=3 SV=1
          Length = 701

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 500 RQRVYNVE*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGI 345
           RQ+  N++    L +T G + I+  +LPV  ++E++ T H   G    V  +
Sbjct: 616 RQKRINLDSPFWLKVTWGQHRIVSKELPVEVHYESLGTHHEIYGHCKIVRSV 667


>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens
            GN=LAMA2 PE=1 SV=4
          Length = 3122

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -3

Query: 324  CRLHPGNSYQESI*ISFQKL*SRCLQSIKGRSVQVGSSGTLAWKSRRSARKPCTCIQTLM 145
            CR + G S+ E      Q     C  +++G+      +GT   +S R    PC C     
Sbjct: 918  CRCNAGGSFSEVC--HSQTGQCECRANVQGQRCDKCKAGTFGLQSARGC-VPCNCNSFGS 974

Query: 144  NSFDCLLNRSC 112
             SFDC  +  C
Sbjct: 975  KSFDCEESGQC 985
tr_hit_id A9RRB0
Definition tr|A9RRB0|A9RRB0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 85
Score (bit) 101.0
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913435|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_C02.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RRB0|A9RRB0_PHYPA Predicted protein (Fragment) OS=Physcomit...   101   2e-20
tr|Q54SN3|Q54SN3_DICDI Putative uncharacterized protein OS=Dicty...    60   6e-08
tr|A0ACZ7|A0ACZ7_STRAM Putative enoyl-CoA hydratase/isomerase fa...    60   8e-08
tr|Q47PN9|Q47PN9_THEFY Putative enoyl-CoA hydratase/isomerase fa...    57   4e-07
tr|B6KFN8|B6KFN8_TOXGO Enoyl-CoA hydratase/isomerase family prot...    53   9e-06
tr|A0Z9E4|A0Z9E4_9GAMM Putative enoyl-CoA hydratase/isomerase fa...    51   4e-05
tr|A9NYU1|A9NYU1_PICSI Putative uncharacterized protein OS=Picea...    50   5e-05
tr|A8L469|A8L469_FRASN Enoyl-CoA hydratase/isomerase OS=Frankia ...    50   6e-05
tr|A8KYK2|A8KYK2_FRASN Enoyl-CoA hydratase/isomerase OS=Frankia ...    49   1e-04
tr|B1MBC5|B1MBC5_MYCA9 Putative enoyl-coa hydratase/isomerase fa...    47   7e-04
tr|A0YFY4|A0YFY4_9GAMM Putative enoyl-CoA hydratase/isomerase fa...    45   0.001
tr|Q0S9U5|Q0S9U5_RHOSR Possible enoyl-CoA hydratase OS=Rhodococc...    45   0.003
tr|Q9P3G4|Q9P3G4_NEUCR Putative uncharacterized protein B2A19.01...    43   0.007
tr|Q65XC3|Q65XC3_ORYSJ Os05g0529200 protein OS=Oryza sativa subs...    42   0.013
tr|A3B635|A3B635_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.013
tr|A2Y6S0|A2Y6S0_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.013
tr|B6GYH9|B6GYH9_PENCH Pc12g01170 protein OS=Penicillium chrysog...    42   0.013
tr|A0C764|A0C764_PARTE Chromosome undetermined scaffold_154, who...    42   0.021
tr|B2B1W2|B2B1W2_PODAN Predicted CDS Pa_6_4650 OS=Podospora anse...    42   0.021
tr|Q9CB21|Q9CB21_MYCLE Possible enoyl-CoA hydratase OS=Mycobacte...    41   0.037
tr|Q0S351|Q0S351_RHOSR Possible enoyl-CoA hydratase OS=Rhodococc...    41   0.037
tr|B2GIB8|B2GIB8_KOCRD Putative enoyl-CoA hydratase OS=Kocuria r...    41   0.037
tr|B8ZTB9|B8ZTB9_MYCLE Possible enoyl-CoA hydratase OS=Mycobacte...    41   0.037
tr|B6TPA4|B6TPA4_MAIZE Carnitine racemase/ catalytic OS=Zea mays...    41   0.037
tr|Q1YQ28|Q1YQ28_9GAMM Putative enoyl-CoA hydratase/isomerase fa...    40   0.048
tr|Q5Z184|Q5Z184_NOCFA Putative enoyl-CoA hydratase/isomerase fa...    40   0.062
tr|A9NZH5|A9NZH5_PICSI Putative uncharacterized protein OS=Picea...    40   0.062
tr|A9NSP6|A9NSP6_PICSI Putative uncharacterized protein OS=Picea...    40   0.062
tr|Q5YVK1|Q5YVK1_NOCFA Putative enoyl-CoA hydratase/isomerase fa...    40   0.081
tr|Q5AY63|Q5AY63_EMENI Putative uncharacterized protein OS=Emeri...    40   0.081

>tr|A9RRB0|A9RRB0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_26730 PE=4 SV=1
          Length = 205

 Score =  101 bits (252), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 67/85 (78%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E +IKLP +PGMNAII+ KLPV TYH+A+L+A RY G+TA  AG++H + SD+ ST + A
Sbjct: 121 EIDIKLPFSPGMNAIIRCKLPVMTYHKAMLSAFRYTGQTAVEAGMVHSSPSDLQSTYQEA 180

Query: 299 IKKASELASRNYDRGVYRALKEEVF 225
           +K A  LASRN+DR VY+ +K+++F
Sbjct: 181 LKLAKGLASRNFDRVVYQTIKKQMF 205


>tr|Q54SN3|Q54SN3_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0204191 PE=4 SV=1
          Length = 249

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPT-YHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRET 303
           E +I +PLTPGMNAI++ K+     + + VLT  R+ GK A    ++  +C+D+    E 
Sbjct: 142 EIDIHIPLTPGMNAILQCKITNSNIFRDVVLTGKRFGGKEAEKLQLVDKSCTDI---LEK 198

Query: 302 AIKKASELASRNYDRGVYRALKEEVFKWEARELLHGSL 189
           +++ A  L ++  DR  + +LKEE++K  ++ELL  ++
Sbjct: 199 SVELAELLHTKGKDRITFGSLKEEMYKNASKELLEKTI 236


>tr|A0ACZ7|A0ACZ7_STRAM Putative enoyl-CoA hydratase/isomerase
           family protein OS=Streptomyces ambofaciens ATCC 23877
           GN=SAMR0642 PE=4 SV=1
          Length = 223

 Score = 59.7 bits (143), Expect = 8e-08
 Identities = 33/73 (45%), Positives = 47/73 (64%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E +I +P TPGM A+I+S+L   T HEA+LTA RY G  AA AG++  A ++ D+ R TA
Sbjct: 127 EADINIPFTPGMAALIQSRLAPRTAHEAMLTARRYGGTDAAAAGVVDRAVTE-DAVRSTA 185

Query: 299 IKKASELASRNYD 261
           I+ A    ++  D
Sbjct: 186 IEIAQAQVNKAGD 198


>tr|Q47PN9|Q47PN9_THEFY Putative enoyl-CoA hydratase/isomerase
           family protein OS=Thermobifida fusca (strain YX)
           GN=Tfu_1544 PE=4 SV=1
          Length = 223

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E +IK+P TPGM+A+I+++L   T HEA++TA RY G  A  AGI+  A ++ D  R TA
Sbjct: 127 EADIKIPFTPGMSALIQARLSPQTAHEAMVTARRYGGHDAFAAGIVDSAVAE-DEVRATA 185

Query: 299 IKKAS 285
           +  A+
Sbjct: 186 LDIAA 190


>tr|B6KFN8|B6KFN8_TOXGO Enoyl-CoA hydratase/isomerase family
           protein, putative OS=Toxoplasma gondii ME49
           GN=TGME49_042390 PE=4 SV=1
          Length = 250

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 31/93 (33%), Positives = 49/93 (52%)
 Frame = -1

Query: 470 IKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETAIKK 291
           I LPLTPGM A+I+SK+    +   +L   R+ G  A  A I+           +TA + 
Sbjct: 137 IGLPLTPGMCAVIQSKIDRSLWTSTMLRGQRWTGTEALAARIVDNVAVGDAEVLKTARRL 196

Query: 290 ASELASRNYDRGVYRALKEEVFKWEARELLHGS 192
           A+ +A+   +R VY ++K E++  E R L  G+
Sbjct: 197 AASVAAFGENRVVYGSIKREIYARELRALDEGN 229


>tr|A0Z9E4|A0Z9E4_9GAMM Putative enoyl-CoA hydratase/isomerase
           family protein OS=marine gamma proteobacterium HTCC2080
           GN=MGP2080_15989 PE=3 SV=1
          Length = 220

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E ++ +P+ P M  I+++KLP  T  +AVLT  RY    A VAGI  G  S  +     A
Sbjct: 129 EVDVGVPIPPAMMGILRAKLPASTTRDAVLTGKRYAADEAMVAGIADGQAS-AEELLTQA 187

Query: 299 IKKASELASRNYDRGVYRALKEEVFKWEARELLHG 195
              A EL ++  + G++  LK  +F   A  L+ G
Sbjct: 188 KAMARELGTK--EPGIFSTLKTTLFGPTADALVAG 220


>tr|A9NYU1|A9NYU1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 235

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 30/99 (30%), Positives = 49/99 (49%)
 Frame = -1

Query: 500 RQRVYNVE*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDV 321
           R  +Y  E +I + L   + A+I+SKL   T  + VL A ++  + A   GI+    +D 
Sbjct: 122 RSVLYMSELDIGMKLPRSLMAVIRSKLLPGTLRDVVLGARKFSAQMALEGGIVDSVYADS 181

Query: 320 DSTRETAIKKASELASRNYDRGVYRALKEEVFKWEAREL 204
             T E A+ +A +LA R + + +Y  L+   F     EL
Sbjct: 182 PQTLEAAVSEAQKLAGRGWKKEIYSELRLGAFPGVLEEL 220


>tr|A8L469|A8L469_FRASN Enoyl-CoA hydratase/isomerase OS=Frankia sp.
           (strain EAN1pec) GN=Franean1_2452 PE=4 SV=1
          Length = 223

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E +I +P TP M+A+I+++L   T HEA+ TA RY G+ A  A I+  A ++ +  R T 
Sbjct: 127 EADIDIPFTPAMSALIQARLSPQTAHEAMTTARRYGGRDACAAAIVDRAVAE-EEVRGTG 185

Query: 299 IKKASELASR 270
           ++ A   A R
Sbjct: 186 VEIARAQAGR 195


>tr|A8KYK2|A8KYK2_FRASN Enoyl-CoA hydratase/isomerase OS=Frankia sp.
           (strain EAN1pec) GN=Franean1_0639 PE=4 SV=1
          Length = 225

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E ++ +P + G+  +I++++PV T HEA+ T  RY G  A  AGII G  +D +    TA
Sbjct: 127 EVDVDIPFSIGITELIRARMPVRTAHEAMTTGRRYGGDDALAAGIIDGV-ADQEKVLATA 185

Query: 299 IKKASELASR 270
           I  A  L  +
Sbjct: 186 IAMARPLTGK 195


>tr|B1MBC5|B1MBC5_MYCA9 Putative enoyl-coa hydratase/isomerase
           family OS=Mycobacterium abscessus (strain ATCC 19977 /
           DSM 44196) GN=MAB_2465c PE=4 SV=1
          Length = 216

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 31/92 (33%), Positives = 45/92 (48%)
 Frame = -1

Query: 479 E*EIKLPLTPGMNAIIKSKLPVPTYHEAVLTAHRYVGKTAAVAGIIHGACSDVDSTRETA 300
           E +I +P TPGM ++I++K+   T   A+ T HRY G  A  AG+   +C+       TA
Sbjct: 126 EVDIHIPFTPGMASLIQAKVGPQTAVTAMTTGHRYGGAAAVAAGLA-DSCAAEHEVLSTA 184

Query: 299 IKKASELASRNYDRGVYRALKEEVFKWEAREL 204
           I     L  +  D G   A+K  +F   A  L
Sbjct: 185 IDLMKPLTGK--DSGTLSAIKATMFAATATAL 214