BP913440 |
Clone id |
YMU001_000030_C07 |
Library |
YMU01 |
Length |
583 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000030_C07. |
Accession |
BP913440 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTGTGCAAAGCTGACATTGATATGGTGCCTCCTCTAAGCTGCCCTTCACTGCATGGTACT CAACGATTTGGCATTCTTAACCACATCTACTCTTGGAAATCTGTAGCTGTTATTCATATG TTAGAGAAGCAAATGGGGCCTGATGCCTTCCGAAAGATTCTCCAGAGGGTTATTTTGAGG GCTCAAGATCCAGTGCGCAAGTCAAGAACTCTGAGTGCGAAGGAGTTTCGGCATTTTGCA AACAGGCTAGGAAACCTTGAGCGCCCATTTTTAAAGGAGTTCTTTCCTCGTTGGGTGGAA TTCCAAGACTGTCCAGTCTTGAGGATGGGGTTTGAGTACAACAAAAGGAGAAATATGATC GAGCTAGCTGTTTTCAGAAGCTGTACAGCATCATCTGAGAAGGTGATGGAACTTAAAGGA GGTGATGAGGTTCCTGATAGAGCAAGGGGGACTGATGCTGGCTGGCCTGGCATGATGAGC ATTCGCGTTCATGAGATTGATGGGATGTATGATCATCCCAGTTTGCCAATGTCAGGCGAT ACTTACCAGCTTCTCGAAATACACTGTCACTCAAAACTTGCCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23255 |
Definition |
sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae |
Align length |
174 |
Score (bit) |
56.6 |
E-value |
8.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T8U3 |
Definition |
tr|A9T8U3|A9T8U3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
190 |
Score (bit) |
250.0 |
E-value |
4.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913440|Adiantum capillus-veneris mRNA, clone: YMU001_000030_C07. (567 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T8U3|A9T8U3_PHYPA Predicted protein (Fragment) OS=Physcomit... 250 4e-65 tr|A7PGN6|A7PGN6_VITVI Chromosome chr17 scaffold_16, whole genom... 250 4e-65 tr|A9T584|A9T584_PHYPA Predicted protein OS=Physcomitrella paten... 232 1e-59 tr|Q8LPF0|Q8LPF0_ARATH At1g73960/F2P9_17 OS=Arabidopsis thaliana... 226 7e-58 tr|Q6SJQ9|Q6SJQ9_ARATH TFIID component TAF2 (Fragment) OS=Arabid... 226 7e-58 tr|B8BF71|B8BF71_ORYSI Putative uncharacterized protein OS=Oryza... 216 5e-55 tr|A3BYR0|A3BYR0_ORYSJ Putative uncharacterized protein OS=Oryza... 216 5e-55 tr|Q9C9B7|Q9C9B7_ARATH Putative uncharacterized protein F2P9.17 ... 190 4e-47 tr|A5BJI6|A5BJI6_VITVI Putative uncharacterized protein OS=Vitis... 117 6e-25 tr|A5BCE1|A5BCE1_VITVI Putative uncharacterized protein OS=Vitis... 84 4e-15 tr|B2G465|B2G465_ZYGRO Transcription initiation factor TFIID sub... 57 5e-07 tr|A6ZTM3|A6ZTM3_YEAS7 TATA binding protein-associated factor OS... 57 7e-07 tr|B5VEY4|B5VEY4_YEAS6 YCR042Cp-like protein OS=Saccharomyces ce... 57 9e-07 tr|B3LUA7|B3LUA7_YEAS1 Transcription initiation factor TFIID sub... 57 9e-07 tr|A7TF78|A7TF78_VANPO Putative uncharacterized protein OS=Vande... 56 2e-06 tr|A1C437|A1C437_ASPCL Putative uncharacterized protein OS=Asper... 54 6e-06 tr|Q4WCC2|Q4WCC2_ASPFU Transcription initiation factor TFIID sub... 54 8e-06 tr|Q0D1R7|Q0D1R7_ASPTN Putative uncharacterized protein OS=Asper... 54 8e-06 tr|B0Y9X0|B0Y9X0_ASPFC Transcription initiation factor TFIID sub... 54 8e-06 tr|A1DBA7|A1DBA7_NEOFI Putative uncharacterized protein OS=Neosa... 54 8e-06 tr|A6QZH4|A6QZH4_AJECN Transcription initiation factor TFIId 127... 52 2e-05 tr|B2WCS7|B2WCS7_PYRTR TATA-binding protein associated factor Ta... 52 2e-05 tr|B5RSR4|B5RSR4_DEBHA DEHA2A06424p OS=Debaryomyces hansenii GN=... 52 3e-05 tr|A2R8P3|A2R8P3_ASPNC Complex: TFIID of S. cerevisiae is compos... 51 4e-05 tr|Q752A1|Q752A1_ASHGO AFR674Cp OS=Ashbya gossypii GN=AFR674C PE... 51 5e-05 tr|Q59RY5|Q59RY5_CANAL Putative uncharacterized protein OS=Candi... 51 5e-05 tr|Q59RI5|Q59RI5_CANAL Putative uncharacterized protein OS=Candi... 51 5e-05 tr|Q6FLV8|Q6FLV8_CANGA Similar to uniprot|P23255 Saccharomyces c... 50 9e-05 tr|Q2URY0|Q2URY0_ASPOR TATA binding protein associated factor OS... 50 1e-04 tr|Q0UUJ1|Q0UUJ1_PHANO Putative uncharacterized protein OS=Phaeo... 50 1e-04
>tr|A9T8U3|A9T8U3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_142028 PE=4 SV=1 Length = 1068
Score = 250 bits (638), Expect = 4e-65 Identities = 121/190 (63%), Positives = 146/190 (76%), Gaps = 5/190 (2%) Frame = +3
Query: 12 PPLSCPS-----LHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDP 176 P LS P+ + GT++ G+L I WK+ AV+ MLEKQMGP+ FRK+LQR+I+RAQDP Sbjct: 402 PVLSPPAGLDMAMCGTEKLGVLGKIRIWKATAVVQMLEKQMGPEPFRKVLQRIIMRAQDP 461
Query: 177 VRKSRTLSAKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAV 356 RK+RTLS EFRHFAN+LGNLERPFLK+FFPRWVE CP LRMGF Y+KRRNM+ELAV Sbjct: 462 NRKNRTLSTTEFRHFANKLGNLERPFLKDFFPRWVESSGCPRLRMGFVYSKRRNMVELAV 521
Query: 357 FRSCTASSEKVMELKGGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQL 536 R TA + V + + + R +D GWPGMMSIR+HE+DGMYDHPSLPM+GD YQL Sbjct: 522 HRESTAMPKHVGVIGKVEAPESKLRLSDMGWPGMMSIRLHELDGMYDHPSLPMAGDCYQL 581
Query: 537 LEIHCHSKLA 566 LE+ CHSKLA Sbjct: 582 LELQCHSKLA 591
>tr|A7PGN6|A7PGN6_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017623001 PE=4 SV=1 Length = 1256
Score = 250 bits (638), Expect = 4e-65 Identities = 120/183 (65%), Positives = 140/183 (76%), Gaps = 1/183 (0%) Frame = +3
Query: 21 SCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRTLS 200 SC L+GTQ G+ I SWKSVA++ MLEKQMGP++FRKILQ ++ RAQD R RTLS Sbjct: 422 SCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLRTLS 481
Query: 201 AKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTASS 380 KEFRHFAN++GNLERPFLKEFFPRWV CPVLR G YNKR+N++ELAV R CTA+ Sbjct: 482 TKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCTAAP 541
Query: 381 E-KVMELKGGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHCHS 557 + M L G + R D GWPGMMSIRVHE+DGMYDHP LPM+G+T+QLLEI CHS Sbjct: 542 DTNTMVLNG--NIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCHS 599
Query: 558 KLA 566 KLA Sbjct: 600 KLA 602
>tr|A9T584|A9T584_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88236 PE=4 SV=1 Length = 1412
Score = 232 bits (591), Expect = 1e-59 Identities = 116/191 (60%), Positives = 146/191 (76%), Gaps = 6/191 (3%) Frame = +3
Query: 12 PPLSCPS-----LHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDP 176 P LS P+ + GT++ G+L I +WK+ AV+ MLE+QMGP+ FRK+LQR+I+RAQDP Sbjct: 447 PVLSPPAGLDINMCGTEKLGVLGKIRTWKATAVVQMLERQMGPEPFRKVLQRIIMRAQDP 506
Query: 177 VRKSRTLSAKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAV 356 K++TLS EFRHFAN+LGNLERPFLK+FFPRWVE CP L +KRRNM+ELAV Sbjct: 507 DSKNQTLSTTEFRHFANKLGNLERPFLKDFFPRWVESSGCPRL------SKRRNMVELAV 560
Query: 357 FRSCTASSEKVMELKGGDEVPD-RARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQ 533 R T+ ++V + G E+PD + R +D GWPGMMSIR+HE+DGMYDHPSLPM+GD YQ Sbjct: 561 RRESTSIPKRVGAV-GKLEIPDLKLRNSDMGWPGMMSIRLHELDGMYDHPSLPMAGDCYQ 619
Query: 534 LLEIHCHSKLA 566 LLE+ CHSKLA Sbjct: 620 LLELQCHSKLA 630
>tr|Q8LPF0|Q8LPF0_ARATH At1g73960/F2P9_17 OS=Arabidopsis thaliana GN=At1g73960 PE=2 SV=1 Length = 1390
Score = 226 bits (576), Expect = 7e-58 Identities = 109/182 (59%), Positives = 133/182 (73%) Frame = +3
Query: 21 SCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRTLS 200 SC L GT G+ I SWKS AV+ MLEKQMG D+FRKILQ++I RA+DP R+LS Sbjct: 423 SCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSIRSLS 482
Query: 201 AKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTASS 380 KEFR FAN++GNLERPFLKEFF RWV CPVLR+G YNKR+N +E+A R CTA+ Sbjct: 483 TKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALRECTAAL 542
Query: 381 EKVMELKGGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHCHSK 560 + + + G +R DAGWPG+MSIRV+E+DGM DHP LPM+GD +QLLE+ CHSK Sbjct: 543 DARLSVIGATS-DSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPCHSK 601
Query: 561 LA 566 LA Sbjct: 602 LA 603
>tr|Q6SJQ9|Q6SJQ9_ARATH TFIID component TAF2 (Fragment) OS=Arabidopsis thaliana GN=TAF2 PE=2 SV=1 Length = 1370
Score = 226 bits (576), Expect = 7e-58 Identities = 109/182 (59%), Positives = 133/182 (73%) Frame = +3
Query: 21 SCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRTLS 200 SC L GT G+ I SWKS AV+ MLEKQMG D+FRKILQ++I RA+DP R+LS Sbjct: 423 SCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSIRSLS 482
Query: 201 AKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTASS 380 KEFR FAN++GNLERPFLKEFF RWV CPVLR+G YNKR+N +E+A R CTA+ Sbjct: 483 TKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALRECTAAL 542
Query: 381 EKVMELKGGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHCHSK 560 + + + G +R DAGWPG+MSIRV+E+DGM DHP LPM+GD +QLLE+ CHSK Sbjct: 543 DARLSVIGATS-DSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPCHSK 601
Query: 561 LA 566 LA Sbjct: 602 LA 603
>tr|B8BF71|B8BF71_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31331 PE=4 SV=1 Length = 1511
Score = 216 bits (551), Expect = 5e-55 Identities = 106/185 (57%), Positives = 133/185 (71%), Gaps = 1/185 (0%) Frame = +3
Query: 15 PLSCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRT 194 P + L GTQ G I S K+V+V+ MLEKQMGPD+FRKILQ ++ P R SRT Sbjct: 575 PSASSDLFGTQTIGSYGKIRSLKAVSVLQMLEKQMGPDSFRKILQMIVA----PTRASRT 630
Query: 195 LSAKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTA 374 LS KEFRH AN++GNLERPFLKEFFPRWVE CPV+R+G Y+KRRN++ELAV R CT Sbjct: 631 LSTKEFRHLANKVGNLERPFLKEFFPRWVESSGCPVMRLGISYSKRRNLVELAVSRGCTT 690
Query: 375 SSEKVMELK-GGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHC 551 + +++ GD +R D GWPGMMS+RVHE DG+YDHP +PM+G+ Q++EI C Sbjct: 691 KVDPGPDIRTNGD-----SREGDTGWPGMMSVRVHETDGVYDHPIVPMAGEALQVVEIQC 745
Query: 552 HSKLA 566 HSK+A Sbjct: 746 HSKVA 750
>tr|A3BYR0|A3BYR0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_028182 PE=4 SV=1 Length = 1537
Score = 216 bits (551), Expect = 5e-55 Identities = 106/185 (57%), Positives = 133/185 (71%), Gaps = 1/185 (0%) Frame = +3
Query: 15 PLSCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRT 194 P + L GTQ G I S K+V+V+ MLEKQMGPD+FRKILQ ++ P R SRT Sbjct: 632 PSASSDLFGTQTIGSYGKIRSLKAVSVLQMLEKQMGPDSFRKILQMIVA----PTRASRT 687
Query: 195 LSAKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTA 374 LS KEFRH AN++GNLERPFLKEFFPRWVE CPV+R+G Y+KRRN++ELAV R CT Sbjct: 688 LSTKEFRHLANKVGNLERPFLKEFFPRWVESSGCPVMRLGISYSKRRNLVELAVSRGCTT 747
Query: 375 SSEKVMELK-GGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHC 551 + +++ GD +R D GWPGMMS+RVHE DG+YDHP +PM+G+ Q++EI C Sbjct: 748 KVDPGPDIRTNGD-----SREGDTGWPGMMSVRVHETDGVYDHPIVPMAGEALQVVEIQC 802
Query: 552 HSKLA 566 HSK+A Sbjct: 803 HSKVA 807
>tr|Q9C9B7|Q9C9B7_ARATH Putative uncharacterized protein F2P9.17 OS=Arabidopsis thaliana GN=F2P9.17 PE=4 SV=1 Length = 1273
Score = 190 bits (483), Expect = 4e-47 Identities = 96/182 (52%), Positives = 118/182 (64%) Frame = +3
Query: 21 SCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRTLS 200 SC L GT G+ I SWKS ILQ++I RA+DP R+LS Sbjct: 379 SCRDLFGTHSIGMHGKIRSWKS------------------ILQKIISRAKDPSNSIRSLS 420
Query: 201 AKEFRHFANRLGNLERPFLKEFFPRWVEFQDCPVLRMGFEYNKRRNMIELAVFRSCTASS 380 KEFR FAN++GNLERPFLKEFF RWV CPVLR+G YNKR+N +E+A R CTA+ Sbjct: 421 TKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALRECTAAL 480
Query: 381 EKVMELKGGDEVPDRARGTDAGWPGMMSIRVHEIDGMYDHPSLPMSGDTYQLLEIHCHSK 560 + + + G +R DAGWPG+MSIRV+E+DGM DHP LPM+GD +QLLE+ CHSK Sbjct: 481 DARLSVIGATS-DSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPCHSK 539
Query: 561 LA 566 LA Sbjct: 540 LA 541
>tr|A5BJI6|A5BJI6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006736 PE=4 SV=1 Length = 299
Score = 117 bits (292), Expect = 6e-25 Identities = 55/96 (57%), Positives = 68/96 (70%) Frame = +3
Query: 279 VEFQDCPVLRMGFEYNKRRNMIELAVFRSCTASSEKVMELKGGDEVPDRARGTDAGWPGM 458 + F LR G YNKR+N++ELAV R CTA+ + + G+ + R D GWPGM Sbjct: 2 LSFLGLKFLRAGLSYNKRKNLVELAVLRGCTAAPDTNTXVLNGN-IDSENREVDIGWPGM 60
Query: 459 MSIRVHEIDGMYDHPSLPMSGDTYQLLEIHCHSKLA 566 MSIRVHE+DGMYDHP LPM+G+T+QLLEI CHSKLA Sbjct: 61 MSIRVHELDGMYDHPILPMAGETWQLLEIQCHSKLA 96
>tr|A5BCE1|A5BCE1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011583 PE=4 SV=1 Length = 307
Score = 84.3 bits (207), Expect = 4e-15 Identities = 39/70 (55%), Positives = 50/70 (71%) Frame = +3
Query: 21 SCPSLHGTQRFGILNHIYSWKSVAVIHMLEKQMGPDAFRKILQRVILRAQDPVRKSRTLS 200 SC L+GTQ G+ I SWKSVA++ MLEKQMGP++FRKILQ ++ RAQD R RTLS Sbjct: 206 SCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLRTLS 265
Query: 201 AKEFRHFANR 230 KE + ++ Sbjct: 266 TKEVQRICSQ 275
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