NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913452
Clone id YMU001_000030_D07
Library
Length 634
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAGAAGTGCTCTAGAACAAAGTAGGCAAGAAAATGGGCACCTGATGCCAGTTGTAAATC
CACCAAAATTCCTGGCTACTAATAGTGCAAATGCTGGGGGGAACAACATGAAGTTTACAT
CACAAGCTGCAGATTATTTCACGGCAGCAGTTTCAAACCACAGAGAGAAAGAGCCACTTA
TTGGAGATATGTTGACTCCAAGTTTGCAAACTCCACTGCTTGGGTCTTTTTCCAACAACA
ATGAAGGTTGCCTTCTTACAGAGAGTCTAGAGTTCGGTTCCCTTGGTCCAGGGTTTCTGG
GAAATTCTAAAAAGGTACTTGTCTATGATGGTGGGAGGAGAGACCAAGATGGATGGAGAT
CTCAAAGTTCTCAATCCTTAAAGGGTGGGGACACGACAGATAACGGAGAAGTAACAGCGA
AGAAGATGCTTTTCAGTGATAATCAGCAAAGCTCGTTGAAGCGCTGTTATGAGTTGAAGG
AAGAAGATTTTCCACCTCTGTCTACCAGCAGCCAGATTGGCAAATCTACTACTCCTTTGA
GTGCTCAAAAAGATTCAATCACAGAATGGCCTCATTTGCAAGCTTGTGTTACTGATAGCT
CAATTTGGAACTCACCTAACCTTCAGGAGAGTAT
■■Homology search results ■■ -
sp_hit_id A8X0L9
Definition sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis briggsae
Align length 97
Score (bit) 33.5
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913452|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_D07.
         (634 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis bri...    33   0.93 
sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase...    33   1.6  
sp|Q78EH2|PCSK4_RAT Proprotein convertase subtilisin/kexin type ...    32   2.1  
sp|P75444|Y334_MYCPN Putative ABC transporter ATP-binding protei...    32   2.1  
sp|P29121|PCSK4_MOUSE Proprotein convertase subtilisin/kexin typ...    32   2.7  
sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidop...    32   2.7  
sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing prote...    32   2.7  
sp|A5UM78|GATB_METS3 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   6.1  
sp|P0ABC7|HFLK_ECOLI Protein hflK OS=Escherichia coli (strain K1...    30   7.9  
sp|P0ABC8|HFLK_ECO57 Protein hflK OS=Escherichia coli O157:H7 GN...    30   7.9  

>sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis briggsae
            GN=lex-1 PE=3 SV=1
          Length = 1221

 Score = 33.5 bits (75), Expect = 0.93
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = +3

Query: 336  RRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQ 515
            ++DQ   +  SSQ   G DT +  E  A+  + +D          E+KE    P+ T   
Sbjct: 1077 KKDQKRNKKASSQDPDGDDTEETEEAVAENNVDAD---------VEMKETPADPVPTIQS 1127

Query: 516  IGKSTTPLSAQKDSITEWPHLQACVTDSSIWNSPNLQ 626
                   +    DSIT+   ++ CV  S  W+   L+
Sbjct: 1128 SSSQEREIIVSADSITDL--IKLCVEKSEGWSVSELE 1162


>sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase I
            OS=Dictyostelium discoideum GN=dhkI PE=3 SV=1
          Length = 1736

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 81   NSANAGGNNMKFTSQAADYFTAAVSNHREKEPLIGDMLTPSLQTPLLGSFSNNNEGCLLT 260
            N+ N   NN    +   +  T   SN+   +P      TP    P+    SNNN  C LT
Sbjct: 1435 NNNNNNNNNNNNNNNNNNNNTTNTSNNHTSDPSKSSNSTPETSPPISSPRSNNNNNCSLT 1494


>sp|Q78EH2|PCSK4_RAT Proprotein convertase subtilisin/kexin type 4
           OS=Rattus norvegicus GN=Pcsk4 PE=2 SV=1
          Length = 678

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 119 CKLHVVPPSICTISSQEFWWIYNWHQVPI 33
           C L +V   +C ISS+++WW+Y+  Q P+
Sbjct: 593 CPLSIVA-ELCLISSKQWWWLYSHTQQPV 620


>sp|P75444|Y334_MYCPN Putative ABC transporter ATP-binding protein
           MPN_334 OS=Mycoplasma pneumoniae GN=MPN_334 PE=3 SV=1
          Length = 326

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 196 VNISPISGSFSLWFETAAVK*SAACDVNFMLFPPAFALLVARNFGGFTTGIRCPFS 29
           V +  +   F  W +   +K     DVNF + P  F   + +N  G TT I+C  S
Sbjct: 7   VEVKHLEKEFGFWRKNRILK-----DVNFAIMPGEFHAFIGQNGAGKTTTIKCLIS 57


>sp|P29121|PCSK4_MOUSE Proprotein convertase subtilisin/kexin type 4
           OS=Mus musculus GN=Pcsk4 PE=2 SV=1
          Length = 655

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 92  ICTISSQEFWWIYNWHQVPI 33
           +C ISSQ++WW+Y+  Q P+
Sbjct: 619 LCLISSQQWWWLYSHPQQPV 638


>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis
           thaliana GN=DOF2.4 PE=2 SV=1
          Length = 330

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 16/193 (8%)
 Frame = +3

Query: 81  NSANAGGNNMKFTSQAADYFTAAVSNH--REKEPLIGDMLTPS-LQTPL---LGSFSNNN 242
           N++ A  NN  F+S  A   +  +S+H    +E ++  +L+P+ L  P    LG  ++N 
Sbjct: 152 NNSTATSNNTSFSSGNASTISTILSSHYGGNQESILSQILSPARLMNPTYNHLGDLTSNT 211

Query: 243 EGCLLTESLEFGSLGP-------GFLGNSKKVLVYDGGRRDQDGWRSQS---SQSLKGGD 392
           +       L +G L         G  G S    V        D WRS S     S+ GG+
Sbjct: 212 KTDNNMSLLNYGGLSQDLRSIHMGASGGSLMSCV--------DEWRSASYHQQSSMGGGN 263

Query: 393 TTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQIGKSTTPLSAQKDSITEWP 572
             D           S N   S    Y  +       S SS +    + +  + D+  +W 
Sbjct: 264 LED-----------SSNPNPSANGFYSFESPRITSASISSALASQFSSVKVE-DNPYKWV 311

Query: 573 HLQACVTDSSIWN 611
           ++     + S WN
Sbjct: 312 NVNG---NCSSWN 321


>sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1
            OS=Homo sapiens GN=BRWD1 PE=1 SV=3
          Length = 2320

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
 Frame = +3

Query: 264  SLEFGSLGPGFLGNSKKVL------VYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTA-- 419
            SLE G +     GN++KVL        +  +   D   + SS+S+  G    +   +A  
Sbjct: 1611 SLETGEILKARAGNNRKVLRKCAAVAANKIKLMSDVEENSSSESVCSGRKLPHRNASAVA 1670

Query: 420  -KKMLFSDNQQSSLKRCYE---LKEEDFPPLSTSSQIGKSTTPLSAQKDSITE 566
             KK+L +   + SLK   E   LK+E+ P   +SS   +S    S  +DS +E
Sbjct: 1671 RKKLLHNSEDEQSLKSEIEEEELKDENQPLPVSSSHTAQSNVDESENRDSESE 1723


>sp|A5UM78|GATB_METS3 Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861) GN=gatB PE=3 SV=1
          Length = 450

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 294 FLGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSD------NQQSS 455
           FL    +VL Y GG R +   R+  + S++GG+  +   + + K  +         Q++ 
Sbjct: 153 FLKELIRVLQYSGGARGEGTMRADVNISIEGGNRVEMKNINSIKGAYKALKFELVRQKNL 212

Query: 456 LKRCYELKEE 485
           +KR  E+K+E
Sbjct: 213 MKRGVEIKQE 222


>sp|P0ABC7|HFLK_ECOLI Protein hflK OS=Escherichia coli (strain K12)
           GN=hflK PE=1 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 31/86 (36%), Positives = 40/86 (46%)
 Frame = +3

Query: 297 LGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYEL 476
           LGN++KVLV D G    +       Q LKGG+        AK    SDN  S+L R    
Sbjct: 335 LGNTRKVLVNDKG---GNLMVLPLDQMLKGGNAP-----AAK----SDNGASNLLR---- 378

Query: 477 KEEDFPPLSTSSQIGKSTTPLSAQKD 554
                PP S+S+  G S T  ++Q D
Sbjct: 379 ----LPPASSSTTSGASNTSSTSQGD 400


>sp|P0ABC8|HFLK_ECO57 Protein hflK OS=Escherichia coli O157:H7
           GN=hflK PE=3 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 31/86 (36%), Positives = 40/86 (46%)
 Frame = +3

Query: 297 LGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYEL 476
           LGN++KVLV D G    +       Q LKGG+        AK    SDN  S+L R    
Sbjct: 335 LGNTRKVLVNDKG---GNLMVLPLDQMLKGGNAP-----AAK----SDNGASNLLR---- 378

Query: 477 KEEDFPPLSTSSQIGKSTTPLSAQKD 554
                PP S+S+  G S T  ++Q D
Sbjct: 379 ----LPPASSSTTSGASNTSSTSQGD 400
tr_hit_id Q3TP41
Definition tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 129
Score (bit) 36.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913452|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_D07.
         (634 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus m...    37   1.3  
tr|Q23EB6|Q23EB6_TETTH Cation channel family protein OS=Tetrahym...    36   2.2  
tr|B5Y5D8|B5Y5D8_PHATR Predicted protein OS=Phaeodactylum tricor...    35   3.7  
tr|B4HME4|B4HME4_DROSE GM20545 OS=Drosophila sechellia GN=GM2054...    35   3.7  
tr|Q2S1V9|Q2S1V9_SALRD Dienelactone hydrolase family OS=Saliniba...    35   4.9  
tr|A9SY61|A9SY61_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.9  
tr|A5AGU0|A5AGU0_VITVI Putative uncharacterized protein (Chromos...    34   8.3  
tr|Q5U9P6|Q5U9P6_CHEDE PaxIII-PAID (Fragment) OS=Cherax destruct...    34   8.3  

>tr|Q3TP41|Q3TP41_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Csn1s2a PE=2 SV=1
          Length = 183

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
 Frame = +3

Query: 249 CLLTESLEFGSLGPGFLGNSKKVLVYDGGRRDQDGWRSQSSQSLKGGDTTDNGEVTAKKM 428
           CL+  +L    +            +Y G + D   +   +  S     + ++ E  ++K+
Sbjct: 8   CLVVVALAKHEIKDKSSSEESSASIYPGSKLDNSVFFQTTKDSASSSSSEESSEEVSEKI 67

Query: 429 LFSDNQQSSLKRCYELKEEDFPPLSTSSQIGKSTTPL-SAQKDSITEWPHLQACVTDSSI 605
           + S+ Q+ +L      +++ F   S  S   +  TPL   Q+ S+ +WP        ++I
Sbjct: 68  VQSEEQKVNLN-----QQKKFKQFSQESSFSQCCTPLHQQQQSSVNQWPQ------PNAI 116

Query: 606 WNSPNLQES 632
            N+P  QES
Sbjct: 117 HNTPT-QES 124


>tr|Q23EB6|Q23EB6_TETTH Cation channel family protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00717620 PE=4 SV=2
          Length = 1321

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 342  DQDGWRSQSSQS-LKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQI 518
            DQ+   +Q+SQS LK  D + N  +  K M  SD   +S  + +++       + +  QI
Sbjct: 786  DQNSSTNQTSQSSLK--DNSSNKSINEKYMFKSDRSLNSTLKDHQVNNNSLKLIKSQIQI 843

Query: 519  GKSTTPLSAQKDSITE 566
            GK ++ +  Q+DS+ +
Sbjct: 844  GKQSSQVKNQRDSLKD 859


>tr|B5Y5D8|B5Y5D8_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATR_33473 PE=4 SV=1
          Length = 383

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
 Frame = +3

Query: 288 PGFLGNSKKVLVYDGGR----RDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSS 455
           P  +G SK +     G+    + Q GW  + S S KG    +  +V  KK+++    + +
Sbjct: 192 PKAMGASKPLKAVQKGKAVEAKKQGGWFGKPSNSKKGATAAEPKQV--KKIVYKVPAKQN 249

Query: 456 LK-RCYELKEEDFPPLSTSSQIGKSTTPLSAQKDSIT 563
           L     E K+E   P   S+++ KSTTPL+A   S+T
Sbjct: 250 LPPSASETKQE---PAFVSARL-KSTTPLAAASSSVT 282


>tr|B4HME4|B4HME4_DROSE GM20545 OS=Drosophila sechellia GN=GM20545
           PE=4 SV=1
          Length = 845

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 24/81 (29%), Positives = 31/81 (38%)
 Frame = +3

Query: 357 RSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYELKEEDFPPLSTSSQIGKSTTP 536
           RS S  SL    +  N     K M  + +Q+ SLKR  E      PPL+T      ST  
Sbjct: 330 RSSSFSSLSSFSSISNISSVCKNMASNTSQEGSLKRTKERTPPPMPPLTTHKPAATSTAT 389

Query: 537 LSAQKDSITEWPHLQACVTDS 599
            +    S T      A  T +
Sbjct: 390 SATSAASATSAATASATATSA 410


>tr|Q2S1V9|Q2S1V9_SALRD Dienelactone hydrolase family
           OS=Salinibacter ruber (strain DSM 13855) GN=SRU_1703
           PE=4 SV=1
          Length = 337

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = +3

Query: 12  LEQSRQENGHLMPVVNPPKFLATNSANAGGNNMKFTSQAADYFTAAVSNHREKEPLIGDM 191
           +E  R    +L    + P+         GG   +  ++ A  F AAV+ +   +PL G+ 
Sbjct: 199 VENVRDGRAYLSSEADAPRTALLGWCFGGGMTYRTLAEEASAFDAAVAYYGTPDPLAGEA 258

Query: 192 LTPSLQTPLLGSFSNNNEGCLLTESLEF 275
           L  +L+TP+L  F   ++   +  + +F
Sbjct: 259 L-QALETPILAHFGTQDQAVPIDAARKF 285


>tr|A9SY61|A9SY61_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_234432 PE=4 SV=1
          Length = 1022

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 48   PVVNPP-----KFLATNSANAGGNNMKFTSQAADYFTAAVSNHREKEPLIGDMLTPSLQT 212
            P+VNP      +F   + A+   N+M FT++  + ++ +      + P  GD+L    +T
Sbjct: 859  PIVNPTFFKRYRFNCDSEASPSINSMPFTTEDINRYSPSRRFGSPQSPCFGDLLNGDTKT 918

Query: 213  PLLGS 227
            PL GS
Sbjct: 919  PLFGS 923


>tr|A5AGU0|A5AGU0_VITVI Putative uncharacterized protein (Chromosome
           chr6 scaffold_25, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00022149001 PE=4 SV=1
          Length = 536

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
 Frame = +3

Query: 132 DYFTAAVSNHREKEPLIGDMLTPSLQTPLLGSFSNNNEGCLLTESLEFGSLGPGFLGNSK 311
           D  + +  N +E +    D L+P LQ P  GS   +    +  +S   GSL         
Sbjct: 152 DSSSTSSMNGKETKNSQEDELSPPLQRP--GSSGLSPGSRVAKDSSWGGSLSL----TEY 205

Query: 312 KVLVYDGG-----RRDQDGWRSQSSQSLKGGDTTDNGEVTAKKMLFSDNQQSSLKRCYEL 476
           K+   DG      + +++  + ++ ++   G +TD+G + A++     NQ   +K   E+
Sbjct: 206 KICKSDGATDASTQTEENVSKPKARETCTRGVSTDDGSLEAERNEIYQNQVPCMKENSEI 265

Query: 477 KEEDFPPLSTSS 512
             E   PLSTSS
Sbjct: 266 CRESISPLSTSS 277


>tr|Q5U9P6|Q5U9P6_CHEDE PaxIII-PAID (Fragment) OS=Cherax destructor
           PE=2 SV=1
          Length = 139

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 31/140 (22%)
 Frame = +3

Query: 240 NEGC---LLTESLEFGSLGPGFLGNSK-KVLVYD---------------GGRRDQDGWRS 362
           + GC   +L    E GS+ PG +G SK K  V D               GG+RD D  + 
Sbjct: 4   SHGCVSKILNRYQETGSIRPGVIGGSKPKEGVVDKASAPSVSSISRILRGGKRDDDPRKD 63

Query: 363 QSSQSLKGGDTTDNGEVTAK------------KMLFSDNQQSSLKRCYELKEEDFPPLST 506
            S   + GG  +D  ++ ++            +  F+  Q   L+R +E  +  +P + T
Sbjct: 64  HSIDGILGGGGSDESDIESEPGIPLKRKQRRSRTTFTAEQLEVLERSFE--KTQYPDVYT 121

Query: 507 SSQIGKSTTPLSAQKDSITE 566
             ++        AQK  +TE
Sbjct: 122 REEL--------AQKAKLTE 133