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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913454
Clone id YMU001_000030_D09
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAGAGGAATGCATGCGTCAGCTTTACCCTATACAATACAATGCCATGAGACAAAAACTC
CCTTAANTNNCCATACGAGTACACGCGGGGNNCNTAATGGTCCTTGNTCNTCTAGGGGCA
GCCTCATAAAAGTGCCCACAACGTAAAAAAGGAAGAAATATGAACACTCACAACCCATAA
AAAGGGAGTTCATGCACCAGTTGTGGCCAGCCTTACAACCAAAGACCCTCACATTACACT
TATGGTTATGAATTGCTACCTATCGTGCAGATATCACCTTCATTCTGTCACATCATATAC
CTTGAGCTTAAGATTCACTTCAGCATCTAAAGAACCACACCTTTGACTATCACATTGCAG
CAACCTGCAGTGCATGTTTTGGTACTATAACTTTTCCACCCAGTAACACTTCTAAACCGC
AGTGGTTTGCATCAACAGCAGCAAAGTGTTGCTGCATTTCCGTGCTGCACCTTCCTAGTA
TCTGCTTGATGCAAACTTTAACCCTATTAATTTCGCACCTATGTAGACACTCATTGCCTG
CAGTCTATTAACTAAAAAGAACTTCGGAGAGACACTCTTA
■■Homology search results ■■ -
sp_hit_id Q9LUK1
Definition sp|Q9LUK1|FB275_ARATH Putative F-box protein At5g40050 OS=Arabidopsis thaliana
Align length 74
Score (bit) 33.9
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913454|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_D09.
         (580 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LUK1|FB275_ARATH Putative F-box protein At5g40050 OS=Arabid...    34   0.60 
sp|Q642P2|DOP2_XENLA Protein dopey-2 OS=Xenopus laevis GN=dopey2...    30   6.7  
sp|Q0VD19|ASM_BOVIN Sphingomyelin phosphodiesterase OS=Bos tauru...    30   6.7  
sp|Q07830|GPI13_YEAST GPI ethanolamine phosphate transferase 3 O...    30   8.7  

>sp|Q9LUK1|FB275_ARATH Putative F-box protein At5g40050
           OS=Arabidopsis thaliana GN=At5g40050 PE=4 SV=1
          Length = 302

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +2

Query: 122 PHKSAHNVKKEEI*TLTTHKKGVHAPVVASLTTKDPHITLMVMNCYLSCRY----HLHSV 289
           PH  AHN+KK  +     +   V AP + S+ T  P++  +  + YL+C Y    H + +
Sbjct: 142 PHYIAHNIKKLTV----CYNNDVQAPRILSIYT--PNLVYLDYSDYLTCLYNSENHFNDL 195

Query: 290 TSYTLSLRFTSASK 331
               L L F  A +
Sbjct: 196 LEARLDLAFARAGR 209


>sp|Q642P2|DOP2_XENLA Protein dopey-2 OS=Xenopus laevis GN=dopey2
           PE=2 SV=1
          Length = 2270

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 402 SNTSKPQWFASTAAKCCCISVLHLPSICLMQTLTLLISHLCRHSLPAVY*LKRT 563
           S+ S P WF +    CCC+   ++ ++ +  TL  +I+H    SL     +KR+
Sbjct: 773 SDVSFPLWFKTLMMVCCCVKDCYIQNVAI-STLLEVINHSQSLSLVLADRMKRS 825


>sp|Q0VD19|ASM_BOVIN Sphingomyelin phosphodiesterase OS=Bos taurus
           GN=SMPD1 PE=2 SV=1
          Length = 625

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 363 TCSACFGTITFPPSNTSKPQWFASTAAKCCCISVLHLPSIC 485
           TC   F  I F   N +   W  S A K C +  +  P++C
Sbjct: 87  TCKGLFTAIDFGLRNQASVAWVGSVAIKLCVLLKIAPPAVC 127


>sp|Q07830|GPI13_YEAST GPI ethanolamine phosphate transferase 3
            OS=Saccharomyces cerevisiae GN=GPI13 PE=1 SV=1
          Length = 1017

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 24/93 (25%), Positives = 40/93 (43%)
 Frame = +3

Query: 252  IATYRADITFILSHHIP*A*DSLQHLKNHTFDYHIAATCSACFGTITFPPSNTSKPQWFA 431
            I + + DI F+LS  +      +  + N TF  HI  + S    T+   P +  KPQ   
Sbjct: 881  IPSVQWDIGFMLSEKVTFPFTQIAIILN-TFGPHILVSLSVALLTLWSQPPDVLKPQTLL 939

Query: 432  STAAKCCCISVLHLPSICLMQTLTLLISHLCRH 530
                  C I + +   +CL  +  + ++H  RH
Sbjct: 940  GRIVSNCGILLTYNTILCL--SSFIWVTHFRRH 970
tr_hit_id B4KE04
Definition tr|B4KE04|B4KE04_DROMO GI10295 OS=Drosophila mojavensis
Align length 56
Score (bit) 33.5
E-value 8.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913454|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_D09.
         (580 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KE04|B4KE04_DROMO GI10295 OS=Drosophila mojavensis GN=GI102...    33   8.8  

>tr|B4KE04|B4KE04_DROMO GI10295 OS=Drosophila mojavensis GN=GI10295
           PE=4 SV=1
          Length = 817

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -1

Query: 220 GCKAGHNWCMNSLFMGCECSYFFLFYVVGTFMRLPLXXQGPLXXPRVLVWXXKGVF 53
           G KAG    +N +F       FFL  +     R+P    G L  P  L+W  KGVF
Sbjct: 415 GTKAGSQSVLNLIFEALVRLVFFLLIIFVLLQRVPWLVSGILLLP-TLLWSYKGVF 469