BP913455 |
Clone id |
YMU001_000030_D10 |
Library |
YMU01 |
Length |
563 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000030_D10. |
Accession |
BP913455 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGAATTGGGCAGACTCGTGTAGTCAATGTCTCCCGTTTCACAGTGAAGAACACCATTGA AGACCGAATCCTGGAGCTGCAGGAACGAAAGCGTAAGATGGTAGCTTCTGCTTTTGGTGA GGACTCACCAGCTGATCAGAGGACCAGACTTTCTATGGATGAGATGCGATATCTCTTTCG TGTATGATTGTAAATGCTCTGGGAAGAGGGAAGTTTTGATATTTTGTAAATTGAAAGCAA TTGGTGATGGCCACTTGAAGCAGCCAGGGCGAAGGCCTCAAACCTCGGTGGAATGCAGCT ACGTAGAGCCTATGTCAAAGAATGAAGGCTGTCTTCACTTACATTTTGGCCCTTCAAATG TGATGACTGAGAGGTCGCCACTCACACATTGTAAAGAAAGCTTCAGGTTTGGCACAAAGA CCAGACCAGTCTTTGCTCTAATGCTGGCTTTTGACGAAAGCTGTACAGGGTATTGTAGAA AGATGACTAAGGTTGTTCTTTGCAATTTTAAAGAGCCTGGAGCAACTTTTGGGTGTACAG AGTTCGAGCTGTTTAACATATGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O60177 |
Definition |
sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe |
Align length |
59 |
Score (bit) |
53.9 |
E-value |
5.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SXB1 |
Definition |
tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens |
Align length |
61 |
Score (bit) |
94.7 |
E-value |
3.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913455|Adiantum capillus-veneris mRNA, clone: YMU001_000030_D10. (563 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 95 3e-18 tr|A9RE31|A9RE31_PHYPA Predicted protein (Fragment) OS=Physcomit... 94 7e-18 tr|Q7XN68|Q7XN68_ORYSA OSJNBa0089N06.14 protein OS=Oryza sativa ... 86 2e-15 tr|Q25A47|Q25A47_ORYSA H0323C08.5 protein (H0303G06.18 protein) ... 86 2e-15 tr|Q0J9V7|Q0J9V7_ORYSJ Os04g0629300 protein OS=Oryza sativa subs... 86 2e-15 tr|A2XXW3|A2XXW3_ORYSI Putative uncharacterized protein OS=Oryza... 86 2e-15 tr|Q9LPR7|Q9LPR7_ARATH F11F12.23 protein OS=Arabidopsis thaliana... 85 2e-15 tr|Q94BR5|Q94BR5_ARATH Putative DNA-binding protein OS=Arabidops... 85 2e-15 tr|B8BBD4|B8BBD4_ORYSI Putative uncharacterized protein OS=Oryza... 83 9e-15 tr|A7R7L6|A7R7L6_VITVI Chromosome undetermined scaffold_1859, wh... 82 2e-14 tr|A7R4B9|A7R4B9_VITVI Chromosome undetermined scaffold_645, who... 82 2e-14 tr|A7R3I3|A7R3I3_VITVI Chromosome undetermined scaffold_525, who... 82 2e-14 tr|A7QNM4|A7QNM4_VITVI Chromosome undetermined scaffold_133, who... 82 2e-14 tr|Q6Z9U5|Q6Z9U5_ORYSJ Os08g0180300 protein OS=Oryza sativa subs... 82 2e-14 tr|Q5ZCG5|Q5ZCG5_ORYSJ cDNA clone:J013116F16, full insert sequen... 82 2e-14 tr|Q5ZCG4|Q5ZCG4_ORYSJ Putative ATPase OS=Oryza sativa subsp. ja... 82 2e-14 tr|B8AAE9|B8AAE9_ORYSI Putative uncharacterized protein OS=Oryza... 82 2e-14 tr|A3BQ85|A3BQ85_ORYSJ Putative uncharacterized protein OS=Oryza... 82 2e-14 tr|A2ZYF1|A2ZYF1_ORYSJ Putative uncharacterized protein OS=Oryza... 82 2e-14 tr|A5AIW5|A5AIW5_VITVI Putative uncharacterized protein OS=Vitis... 81 3e-14 tr|B4FJH2|B4FJH2_MAIZE Putative uncharacterized protein OS=Zea m... 81 4e-14 tr|Q9LHE4|Q9LHE4_ARATH Transcription factor-like protein OS=Arab... 80 8e-14 tr|O04082|O04082_ARATH Transcription factor RUSH-1alpha isolog; ... 77 6e-13 tr|B3H7J3|B3H7J3_ARATH Uncharacterized protein At1g61140.3 OS=Ar... 77 8e-13 tr|Q9LUS4|Q9LUS4_ARATH Similarity to transcription factors OS=Ar... 60 8e-08 tr|A9SFD0|A9SFD0_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 60 1e-07 tr|B6QA99|B6QA99_PENMA SWI/SNF family DNA-dependent ATPase Ris1,... 60 1e-07 tr|B2AT12|B2AT12_PODAN Predicted CDS Pa_1_14320 OS=Podospora ans... 59 2e-07 tr|B8LZ36|B8LZ36_9EURO SWI/SNF family DNA-dependent ATPase Ris1,... 58 3e-07 tr|Q6BZX0|Q6BZX0_YARLI YALI0F30261p OS=Yarrowia lipolytica GN=YA... 57 5e-07
>tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens GN=CHR1528 PE=4 SV=1 Length = 1385
Score = 94.7 bits (234), Expect = 3e-18 Identities = 45/61 (73%), Positives = 56/61 (91%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR VNVSRFT+KNTIEDRIL LQERKR++VASAFGE+S +Q+ RL+++++RYLFR Sbjct: 1325 RIGQTRTVNVSRFTIKNTIEDRILALQERKRQIVASAFGENSGGEQKNRLTVEDLRYLFR 1384
Query: 182 V 184 V Sbjct: 1385 V 1385
>tr|A9RE31|A9RE31_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_112295 PE=4 SV=1 Length = 729
Score = 93.6 bits (231), Expect = 7e-18 Identities = 45/61 (73%), Positives = 55/61 (90%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR VNVSRFTVKNTIEDRIL LQERKR++VASAFGE+ +Q+ RL+++++RYLFR Sbjct: 669 RIGQTRTVNVSRFTVKNTIEDRILALQERKRQIVASAFGENDGGEQKNRLTVEDLRYLFR 728
Query: 182 V 184 V Sbjct: 729 V 729
>tr|Q7XN68|Q7XN68_ORYSA OSJNBa0089N06.14 protein OS=Oryza sativa GN=OSJNBa0089N06.14 PE=4 SV=1 Length = 1051
Score = 85.5 bits (210), Expect = 2e-15 Identities = 40/61 (65%), Positives = 50/61 (81%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V VSR T+K+T+EDRIL LQE+KRKMV SAFGED P TRL++D+++YLF Sbjct: 991 RIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGEDKPGGSATRLTIDDLQYLFG 1050
Query: 182 V 184 + Sbjct: 1051 I 1051
>tr|Q25A47|Q25A47_ORYSA H0323C08.5 protein (H0303G06.18 protein) OS=Oryza sativa GN=H0323C08.5 PE=4 SV=1 Length = 1051
Score = 85.5 bits (210), Expect = 2e-15 Identities = 40/61 (65%), Positives = 50/61 (81%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V VSR T+K+T+EDRIL LQE+KRKMV SAFGED P TRL++D+++YLF Sbjct: 991 RIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGEDKPGGSATRLTIDDLQYLFG 1050
Query: 182 V 184 + Sbjct: 1051 I 1051
>tr|Q0J9V7|Q0J9V7_ORYSJ Os04g0629300 protein OS=Oryza sativa subsp. japonica GN=Os04g0629300 PE=2 SV=1 Length = 1051
Score = 85.5 bits (210), Expect = 2e-15 Identities = 40/61 (65%), Positives = 50/61 (81%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V VSR T+K+T+EDRIL LQE+KRKMV SAFGED P TRL++D+++YLF Sbjct: 991 RIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGEDKPGGSATRLTIDDLQYLFG 1050
Query: 182 V 184 + Sbjct: 1051 I 1051
>tr|A2XXW3|A2XXW3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17539 PE=4 SV=1 Length = 1051
Score = 85.5 bits (210), Expect = 2e-15 Identities = 40/61 (65%), Positives = 50/61 (81%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V VSR T+K+T+EDRIL LQE+KRKMV SAFGED P TRL++D+++YLF Sbjct: 991 RIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGEDKPGGSATRLTIDDLQYLFG 1050
Query: 182 V 184 + Sbjct: 1051 I 1051
>tr|Q9LPR7|Q9LPR7_ARATH F11F12.23 protein OS=Arabidopsis thaliana GN=F11F12.23 PE=4 SV=1 Length = 1062
Score = 85.1 bits (209), Expect = 2e-15 Identities = 41/61 (67%), Positives = 49/61 (80%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V V+R T+KNT+EDRIL LQE KRKMVASAFGED TRL++D+++YLF Sbjct: 1002 RIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRLTVDDLKYLFM 1061
Query: 182 V 184 V Sbjct: 1062 V 1062
>tr|Q94BR5|Q94BR5_ARATH Putative DNA-binding protein OS=Arabidopsis thaliana GN=At1g50410 PE=2 SV=1 Length = 981
Score = 85.1 bits (209), Expect = 2e-15 Identities = 41/61 (67%), Positives = 49/61 (80%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V V+R T+KNT+EDRIL LQE KRKMVASAFGED TRL++D+++YLF Sbjct: 921 RIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRLTVDDLKYLFM 980
Query: 182 V 184 V Sbjct: 981 V 981
>tr|B8BBD4|B8BBD4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28047 PE=4 SV=1 Length = 1235
Score = 83.2 bits (204), Expect = 9e-15 Identities = 39/61 (63%), Positives = 49/61 (80%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V VSR T+K+T+EDRIL LQE KR MV+SAFGED TRL++D+++YLFR Sbjct: 1175 RIGQTRPVTVSRLTIKDTVEDRILALQEEKRAMVSSAFGEDKSGGHATRLTVDDLKYLFR 1234
Query: 182 V 184 + Sbjct: 1235 I 1235
>tr|A7R7L6|A7R7L6_VITVI Chromosome undetermined scaffold_1859, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00010086001 PE=4 SV=1 Length = 635
Score = 82.4 bits (202), Expect = 2e-14 Identities = 39/61 (63%), Positives = 51/61 (83%) Frame = +2
Query: 2 RIGQTRVVNVSRFTVKNTIEDRILELQERKRKMVASAFGEDSPADQRTRLSMDEMRYLFR 181 RIGQTR V V R TVK+T+EDRIL LQ++KR+MVASAFGED ++TRL++D+++YLF Sbjct: 575 RIGQTRPVTVLRLTVKDTVEDRILALQQKKREMVASAFGEDETGSRQTRLTVDDLKYLFM 634
Query: 182 V 184 V Sbjct: 635 V 635
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