BP913459 |
Clone id |
YMU001_000030_E02 |
Library |
YMU01 |
Length |
487 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000030_E02. |
Accession |
BP913459 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
TTTTTGATTACATGCAAATAACTAAATTGCAATTCACAAGGAGCTACACTTTTTCATTCT CATGACTGTCAGAATATACAAGGCGATAGGTGAGACATGGAAGACGCATAGTGTGTCAGA ATTCAGGATTCACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCACTGGTGTTGT ACACTAAGGGGGCACCACCCAACAAGATAGCGCCGAGGGTAACTGCCCAGATAGCCAATC CAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTGGGACATAGATAG GGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGACTCCCTTTCCCT TAGCTTTGCGACCAGAGGCATCCAGGTTACCCTTGAATTTGGTATCGCCGGAAGGTCCCA AGGGAGTTTTGGTCGAGATCTTCTTGACACCACTTGCCTCGATTCTGAGGGAGCGGGCGG ATAGCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
108 |
Score (bit) |
144.0 |
E-value |
2.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913459|Adiantum capillus-veneris mRNA, clone: YMU001_000030_E02. (487 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 144 2e-34 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 144 2e-34 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 143 4e-34 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 143 4e-34 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 142 6e-34 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 140 2e-33 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 140 3e-33 sp|A1BF36|NUOH_CHLPD NADH-quinone oxidoreductase subunit H OS=Ch... 32 2.0 sp|P17730|G3P2_TRIKO Glyceraldehyde-3-phosphate dehydrogenase 2 ... 32 2.0 sp|P54118|G3P_NEUCR Glyceraldehyde 3-phosphate-dehydrogenase OS=... 30 4.5 sp|Q94469|G3P_DICDI Glyceraldehyde-3-phosphate dehydrogenase OS=... 30 4.5 sp|P78958|G3P1_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 1 ... 30 4.5 sp|Q3TDE8|ZN691_MOUSE Zinc finger protein 691 OS=Mus musculus GN... 30 7.5 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 7.5 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 7.6 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 7.6 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 29 9.9 sp|Q2S3N1|RISB_SALRD 6,7-dimethyl-8-ribityllumazine synthase OS=... 29 9.9 sp|Q9P8C0|G3P_PHANO Glyceraldehyde-3-phosphate dehydrogenase OS=... 29 9.9 sp|P17244|G3P_CRIGR Glyceraldehyde-3-phosphate dehydrogenase OS=... 29 9.9 sp|O43026|G3P2_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 2 ... 29 9.9
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 144 bits (364), Expect = 2e-34 Identities = 72/108 (66%), Positives = 80/108 (74%) Frame = -1
Query: 481 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 302 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 301 PIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 PIY +EWS SGD Y G TGLAIWAVTL IL GGA LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 144 bits (363), Expect = 2e-34 Identities = 72/108 (66%), Positives = 80/108 (74%) Frame = -1
Query: 481 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 302 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 301 PIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 PIY +EWS SGD Y G TGLAIWAVTL IL GGA LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 143 bits (361), Expect = 4e-34 Identities = 70/108 (64%), Positives = 81/108 (75%) Frame = -1
Query: 481 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 302 S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ KYGANVDGYS Sbjct: 29 SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYS 88
Query: 301 PIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 PIY ++WS SGD Y G TGLAIWAVTL IL GGA LV+NTSALAQ Sbjct: 89 PIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 143 bits (361), Expect = 4e-34 Identities = 74/108 (68%), Positives = 79/108 (73%), Gaps = 1/108 (0%) Frame = -1
Query: 481 SAR-SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGY 305 SAR SL I A KK+ T P GP G FK +DASGR AKGKGVYQ+ KYGANVDGY Sbjct: 30 SARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGY 89
Query: 304 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALA 161 SPIY PEEWS SGD Y G TGL +WAVTL ILLGGA LVY+TSALA Sbjct: 90 SPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 142 bits (359), Expect = 6e-34 Identities = 72/110 (65%), Positives = 79/110 (71%) Frame = -1
Query: 487 KLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDG 308 + S S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYGANVDG Sbjct: 32 RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDG 91
Query: 307 YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 YSPIY +EWS SGD Y G TGLAIWAVTL IL GGA LVYNTSALAQ Sbjct: 92 YSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 140 bits (354), Expect = 2e-33 Identities = 71/105 (67%), Positives = 76/105 (72%) Frame = -1
Query: 472 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 293 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 292 VPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 EWS SGD Y G TGLAIWAVTL IL GGA LVYNTSALAQ Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 140 bits (353), Expect = 3e-33 Identities = 69/108 (63%), Positives = 78/108 (72%) Frame = -1
Query: 481 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 302 S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ KYGANVDGYS Sbjct: 33 SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYS 92
Query: 301 PIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVYNTSALAQ 158 PIY EEW+ +GD YA G TGL IWAVTL +L GGA LVYNTSALAQ Sbjct: 93 PIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|A1BF36|NUOH_CHLPD NADH-quinone oxidoreductase subunit H OS=Chlorobium phaeobacteroides (strain DSM 266) GN=nuoH PE=3 SV=1 Length = 372
Score = 31.6 bits (70), Expect = 2.0 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1
Query: 319 NVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAILLGGAPLVY 179 +V S I +P S ++++ TG +IW LG ++L PLV+ Sbjct: 2 SVMALSQIRIPLLMGNSLNAWSEALTGFSIWGFPLGLVILAAIPLVF 48
>sp|P17730|G3P2_TRIKO Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3 Length = 338
Score = 31.6 bits (70), Expect = 2.0 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Frame = -1
Query: 397 FKGNLDASGRK--AKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWA 224 FKG ++ G+ GK V YT++ A++ +WS +G Y TG+ Sbjct: 56 FKGEVEVDGKDLVVNGKKVRFYTERNPADI----------KWSETGAEYVVESTGVFTTT 105
Query: 223 VTLGAILLGGAP--LVYNTSALAQ*LLLYVNE 134 A L+GGA ++ SA A ++ VNE Sbjct: 106 EKAKAHLVGGAKKVIISAPSADAPMYVMGVNE 137
>sp|P54118|G3P_NEUCR Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2 Length = 338
Score = 30.4 bits (67), Expect = 4.5 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Frame = -1
Query: 397 FKGNLDASGRK--AKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWA 224 FKG ++ G GK V YT++ P +P WS +G Y TG+ Sbjct: 55 FKGTIEVDGADLVVNGKKVKFYTER--------DPAAIP--WSETGADYIVESTGVFTTT 104
Query: 223 VTLGAILLGGAPLVYNTSALAQ*LLLYVNEVNPE 122 A L GGA V SA + +YV VN E Sbjct: 105 EKASAHLKGGAKKVI-ISAPSADAPMYVMGVNNE 137
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
109 |
Score (bit) |
154.0 |
E-value |
2.0e-36 |
Report |
|