BP913460
Clone id YMU001_000030_E03
Library
Length 567
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TAGATATTACCTGCAGGTACTCCCCATATCCACGCCTCTATCAGAGCTCATACCCTTGGC
GCGCCATCCCCTTCAGTCACAATACCGGTGATAAGCCCATTGACAGTCTACCACTACTGG
GAAAGTCTTCTGAAGTAATTGTGTTAAGTATGAGACAGGTGCTTGTCGCAGCTGCTAAGA
TTTCTCTAGTACGCATACATCCTTATGTGCAGGCAAGTCCTTTGCATGTGAGGACATATT
ACCTTCCACACTGTATATGATGGTTTCATGCAACCGTTTGCATTGAACACTGAGCACACA
CTATGGTGGTAGTCAATGCCTCGGCTCCACTTACTAGTAGAAGCATCAGCTTGATGCTTC
TTCACAGCCTAAAGAGCTATGTTGGTTGGCATCTCTAGTAAAGATGCCTGGTTTTTGGCT
TTATGAGGTATTCTCCTCATGCAGGTTTTGTAAGTTTTTCTGCACAGGAGAGCATGTACC
GAGTCGCCCAATATCCGACGTGTCTCATTGATGTGTTTCTGTTGCTTATACATGAGTCCT
GCTCTTGCTCGAAAGAACACACAATGT
■■Homology search results ■■ -
sp_hit_id Q59467
Definition sp|Q59467|COPA2_HELPY Copper-transporting ATPase OS=Helicobacter pylori
Align length 75
Score (bit) 33.1
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913460|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_E03.
(567 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q59467|COPA2_HELPY Copper-transporting ATPase OS=Helicobacter... 33 0.98
sp|Q22295|UGT50_CAEEL Putative UDP-glucuronosyltransferase ugt-5... 31 4.9
sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protei... 30 8.3

>sp|Q59467|COPA2_HELPY Copper-transporting ATPase OS=Helicobacter
pylori GN=copA PE=3 SV=1
Length = 741

Score = 33.1 bits (74), Expect = 0.98
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -2

Query: 512 INETRRILGDSVHALLCRKTYKTCMRRIPHKAKNQASLLEMPTNIAL*AVKKHQADASTS 333
+N +++G + L R Y + + H+ N +SL+ + T+ AL + TS
Sbjct: 122 LNACLQLIGTLIVMHLGRDFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWQLYFVYTS 181

Query: 332 KWSRGIDYHHSVCSV 288
+WS G Y SVC +
Sbjct: 182 QWSYGHYYFESVCVI 196


>sp|Q22295|UGT50_CAEEL Putative UDP-glucuronosyltransferase ugt-50
OS=Caenorhabditis elegans GN=ugt-50 PE=1 SV=2
Length = 523

Score = 30.8 bits (68), Expect = 4.9
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2

Query: 551 RARAGLMYKQQKHINETRRILGDSVHALLCRKTYKTCMRRIPHKAKNQ 408
R AG M ++ + ET D++H++L K+Y + ++RI H KN+
Sbjct: 413 RRGAGKMVLRETVVKET---FFDAIHSVLEEKSYSSSVKRISHLMKNK 457


>sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1
OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1
Length = 482

Score = 30.0 bits (66), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2

Query: 365 VKKHQADASTSKWSRGIDYHHSVCSVFNANGCMKPSYTVW 246
VK H AD + WSR ++Y +GC S+ VW
Sbjct: 335 VKAHTADVNVISWSRNVEY-------LLVSGCDDGSFRVW 367


tr_hit_id A9RKC3
Definition tr|A9RKC3|A9RKC3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 21
Score (bit) 40.4
E-value 0.068
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913460|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_E03.
(567 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RKC3|A9RKC3_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.068
tr|A9S1E3|A9S1E3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.26
tr|Q87NR0|Q87NR0_VIBPA Putative uncharacterized protein VP1808 O... 33 8.3

>tr|A9RKC3|A9RKC3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175824 PE=4 SV=1
Length = 175

Score = 40.4 bits (93), Expect = 0.068
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2

Query: 23 PISTPLSELIPLARHPLQSQY 85
PISTPLSELIPLARHPLQ ++
Sbjct: 155 PISTPLSELIPLARHPLQIRH 175


>tr|A9S1E3|A9S1E3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_105593 PE=4 SV=1
Length = 183

Score = 38.5 bits (88), Expect = 0.26
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2

Query: 23 PISTPLSELIPLARHPLQSQY 85
PISTPLSELIPLARHPL ++
Sbjct: 163 PISTPLSELIPLARHPLHIRH 183


>tr|Q87NR0|Q87NR0_VIBPA Putative uncharacterized protein VP1808
OS=Vibrio parahaemolyticus GN=VP1808 PE=4 SV=1
Length = 226

Score = 33.5 bits (75), Expect = 8.3
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2

Query: 494 ILGDSVHALLCRKTYKTCMRRIPHKAKNQASLLEMPTNIAL*AVKKHQADASTSKWSRGI 315
++G+ V AL +TY+ M+R+ H + LE TN+ S ++ G
Sbjct: 161 LIGNDVQAL---QTYQKAMKRLQHAVEKDHECLEYATNM-------------WSDFAEGC 204

Query: 314 DYHHSVCSVFNANGCMKPSYTVW 246
Y H S+ N + + P +VW
Sbjct: 205 GYDHE--SIKNGSSLLLPQISVW 225