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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913465
Clone id YMU001_000030_E08
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATTTGTTTTCGGATTCGACATTGGTCGGGATATTCTACATTGTCGGTACAGTTTGCTTT
GTTTTGGAAGCCCTGCTCAGCTTGTGGGTTCTAAAGGTAATATAAATAGCTTGCTTTTGG
TTGTGTCAATTGATGTGTTTGTTTGCTGTGAAGCATGGCTACTCTGTTCGTTTGTTTTGC
AGCAAGTATATATGTACTTCCGAGGTTCTGGTAAGGCTGCTCAAATCAGAAGATAAGCAG
TGAGGGCTGCCATATGATAAGGGATACTTTTTCGAGGGGGCGTCTTTTCCATCGAATACT
TTGCTACTTAGCTTAGACCAATGTTAGGCTTTGTAACTTTTGGAATGGAAGAAAGAGTTC
TGTCACTCTCATGCCAATTGGCTTTAGCATAATGGACTAGTCGTTGGATTGCAATCTGTA
TATTCACTTATATATAGCTCGAGGATACAAGGCTCTTGCAGATGCCTTTCCACCAAAATA
AACCAGCATGCCCTGCTTTTCAAGTTTGTACAGCATTTTTTGCGAACATAACGAATAGAC
AGTTCTCTTCAGAGTACCT
■■Homology search results ■■ -
sp_hit_id Q9C6X2
Definition sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana
Align length 34
Score (bit) 44.3
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913465|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_E08.
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane prot...    44   4e-04
sp|Q6Z8F5|SCAM5_ORYSJ Secretory carrier-associated membrane prot...    44   5e-04
sp|Q8H5X5|SCAM1_ORYSJ Secretory carrier-associated membrane prot...    41   0.005
sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated memb...    41   0.005
sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein...    40   0.006
sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane prot...    39   0.023
sp|Q0JAI9|SCAM6_ORYSJ Secretory carrier-associated membrane prot...    38   0.039
sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane prot...    38   0.039
sp|Q9SXA5|SCAM5_ARATH Secretory carrier-associated membrane prot...    37   0.051
sp|Q75IC7|SCAM4_ORYSJ Secretory carrier-associated membrane prot...    37   0.051
sp|Q60EA5|SCAM3_ORYSJ Secretory carrier-associated membrane prot...    35   0.32 
sp|Q7F613|SCAM2_ORYSJ Secretory carrier-associated membrane prot...    34   0.42 
sp|Q9LR68|SCAM2_ARATH Secretory carrier-associated membrane prot...    33   0.72 
sp|Q4QRK0|AMPM1_DANRE Methionine aminopeptidase 1 OS=Danio rerio...    30   6.1  

>sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane protein
           4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1
          Length = 264

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+ SDS L GIFY +G   F LE+LLSLWVL+ I
Sbjct: 223 DVISDSLLAGIFYFIGFGLFCLESLLSLWVLQKI 256


>sp|Q6Z8F5|SCAM5_ORYSJ Secretory carrier-associated membrane protein
           5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1
          Length = 281

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D FSD  +VGIFY VG   F LE L+S+WVL+ +
Sbjct: 240 DTFSDHAIVGIFYFVGFALFCLETLVSIWVLQKV 273


>sp|Q8H5X5|SCAM1_ORYSJ Secretory carrier-associated membrane protein
           1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1
          Length = 306

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           DL S + LVGIFY VG   F +E+LLS+WV++ +
Sbjct: 247 DLISKNALVGIFYFVGFGLFCVESLLSIWVIQQV 280



 Score = 37.0 bits (84), Expect = 0.065
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +3

Query: 72  PAQLVGSKGNINSLLLVVSIDVFVCCEAWLLCSFVLQQVYMYFRGSGK 215
           PA  + SK  +  +   V   +F  C   LL  +V+QQVYMYFRGSGK
Sbjct: 244 PAIDLISKNALVGIFYFVGFGLF--CVESLLSIWVIQQVYMYFRGSGK 289


>sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated
           membrane protein 1 OS=Oryza sativa subsp. indica
           GN=SCAMP1 PE=3 SV=1
          Length = 306

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           DL S + LVGIFY VG   F +E+LLS+WV++ +
Sbjct: 247 DLISKNALVGIFYFVGFGLFCVESLLSIWVIQQV 280



 Score = 37.0 bits (84), Expect = 0.065
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +3

Query: 72  PAQLVGSKGNINSLLLVVSIDVFVCCEAWLLCSFVLQQVYMYFRGSGK 215
           PA  + SK  +  +   V   +F  C   LL  +V+QQVYMYFRGSGK
Sbjct: 244 PAIDLISKNALVGIFYFVGFGLF--CVESLLSIWVIQQVYMYFRGSGK 289


>sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein
           OS=Pisum sativum GN=PSAM2 PE=2 SV=1
          Length = 289

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+  D TLVGIFY +G   F LE L+S+WV++ +
Sbjct: 229 DVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQV 262



 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 138 FVCCEAWLLCSFVLQQVYMYFRGSGK 215
           F C E  L+  +V+QQVYM+FRG GK
Sbjct: 247 FFCLET-LISIWVIQQVYMHFRGGGK 271


>sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein
           1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1
          Length = 282

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+ S + LVGIFY +G   F LE+L+S+WV++ +
Sbjct: 223 DVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQV 256



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 138 FVCCEAWLLCSFVLQQVYMYFRGSGK 215
           F C E+ L+  +V+QQVYMYFRGSGK
Sbjct: 241 FFCLES-LVSIWVIQQVYMYFRGSGK 265


>sp|Q0JAI9|SCAM6_ORYSJ Secretory carrier-associated membrane protein
           6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1
          Length = 273

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLK 96
           D FS+  ++GIFY VG   F LE LLS+ VL+
Sbjct: 232 DTFSEHVIIGIFYFVGFALFCLETLLSIGVLQ 263


>sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane protein
           3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1
          Length = 289

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+ S   +VGIFY +G   F LE+++S+WV++ +
Sbjct: 230 DVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQV 263



 Score = 34.7 bits (78), Expect = 0.32
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 138 FVCCEAWLLCSFVLQQVYMYFRGSGK 215
           F C E+ ++  +V+QQVYMYFRGSGK
Sbjct: 248 FFCLES-VVSIWVIQQVYMYFRGSGK 272


>sp|Q9SXA5|SCAM5_ARATH Secretory carrier-associated membrane protein
           5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2
          Length = 291

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+ S   LVGIFY +G   F LE+++S+WV++ +
Sbjct: 232 DVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQV 265



 Score = 33.1 bits (74), Expect = 0.94
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
 Frame = +3

Query: 3   FVFGFDIGRDILHCRYSLLCFGSPAQLVGSKG--------NINSLLLVVSIDVFV----- 143
           F FG+     +LH  + L    +P  +   K         ++ S   +V I  F+     
Sbjct: 192 FNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLF 251

Query: 144 CCEAWLLCSFVLQQVYMYFRGSGK 215
           C E+ ++  +V+QQVYMYFRGSGK
Sbjct: 252 CLES-VVSIWVIQQVYMYFRGSGK 274


>sp|Q75IC7|SCAM4_ORYSJ Secretory carrier-associated membrane protein
           4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1
          Length = 313

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 4   LFSDSTLVGIFYIVGTVCFVLEALLSLWVLK 96
           L  ++ +VG+FY +G   F LE+LLS+WV++
Sbjct: 255 LIGNTVIVGVFYFLGFAMFCLESLLSMWVIQ 285



 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 147 CEAWLLCSFVLQQVYMYFRGSGK 215
           C   LL  +V+Q+VY+YFRGSGK
Sbjct: 274 CLESLLSMWVIQRVYLYFRGSGK 296
tr_hit_id A9TLD7
Definition tr|A9TLD7|A9TLD7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 32
Score (bit) 47.0
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913465|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_E08.
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLD7|A9TLD7_PHYPA Predicted protein OS=Physcomitrella paten...    47   7e-05
tr|B7X6S6|B7X6S6_TOBAC Secretory carrier-associated membrane pro...    49   2e-04
tr|A9PF06|A9PF06_POPTR Putative uncharacterized protein OS=Popul...    48   4e-04
tr|A7PBX6|A7PBX6_VITVI Chromosome chr2 scaffold_11, whole genome...    48   4e-04
tr|A9TRH7|A9TRH7_PHYPA Predicted protein OS=Physcomitrella paten...    47   7e-04
tr|A9RVB1|A9RVB1_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9PAD5|A9PAD5_POPTR Putative uncharacterized protein OS=Popul...    45   0.003
tr|B7EZ37|B7EZ37_ORYSJ cDNA clone:001-208-F01, full insert seque...    44   0.006
tr|B6TM90|B6TM90_MAIZE SC3 protein OS=Zea mays PE=2 SV=1               44   0.006
tr|A9S5T7|A9S5T7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.006
tr|B8AH75|B8AH75_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.008
tr|A9NLD9|A9NLD9_PICSI Putative uncharacterized protein OS=Picea...    44   0.008
tr|B6TQ03|B6TQ03_MAIZE SC3 protein OS=Zea mays PE=2 SV=1               43   0.013
tr|B3TLU6|B3TLU6_ELAGV Secretory carrier membrane protein OS=Ela...    42   0.023
tr|B6U711|B6U711_MAIZE SC3 protein OS=Zea mays PE=2 SV=1               42   0.030
tr|B6TAX3|B6TAX3_MAIZE SC3 protein OS=Zea mays PE=2 SV=1               41   0.039
tr|B4FNI8|B4FNI8_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.039
tr|A7PXE4|A7PXE4_VITVI Chromosome chr12 scaffold_36, whole genom...    41   0.039
tr|B7FIP0|B7FIP0_MEDTR Putative uncharacterized protein OS=Medic...    41   0.050
tr|B7E5U7|B7E5U7_ORYSJ cDNA clone:006-207-G10, full insert seque...    41   0.050
tr|A9S9K6|A9S9K6_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.058
tr|B7FIN0|B7FIN0_MEDTR Putative uncharacterized protein OS=Medic...    40   0.11 
tr|Q7X7D2|Q7X7D2_ORYSA OSJNba0093F12.6 protein (OSJNBa0006A01.24...    39   0.19 
tr|B6SRR6|B6SRR6_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.25 
tr|B4FCJ6|B4FCJ6_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.33 
tr|A3BPW3|A3BPW3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   0.36 
tr|B8ATK5|B8ATK5_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.43 
tr|B7E314|B7E314_ORYSJ cDNA clone:001-018-E05, full insert seque...    38   0.43 
tr|B6T3X4|B6T3X4_MAIZE SC3 protein OS=Zea mays PE=2 SV=1               37   0.55 
tr|B8AL64|B8AL64_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.56 

>tr|A9TLD7|A9TLD7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147248 PE=4 SV=1
          Length = 309

 Score = 47.0 bits (110), Expect(2) = 7e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLK 96
           D+FS + ++GIFY+VG   F LE+LLS+WVLK
Sbjct: 252 DIFSSNIIIGIFYVVGFALFTLESLLSIWVLK 283



 Score = 22.3 bits (46), Expect(2) = 7e-05
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 LLCSFVLQQVYMYFRGSG 212
           LL  +VL+ V  YFRG G
Sbjct: 276 LLSIWVLKGVVQYFRGEG 293


>tr|B7X6S6|B7X6S6_TOBAC Secretory carrier-associated membrane
           protein 2 OS=Nicotiana tabacum GN=NtSCAMP2 PE=2 SV=1
          Length = 271

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+FSD  LVGIFY++G   F LEALLSLWVL+ +
Sbjct: 230 DVFSDHVLVGIFYLIGFAFFCLEALLSLWVLQKV 263


>tr|A9PF06|A9PF06_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 270

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+FSD  LVGIFY+VG   F LE+LLSLWVL+ I
Sbjct: 229 DVFSDHVLVGIFYLVGFGLFCLESLLSLWVLQKI 262


>tr|A7PBX6|A7PBX6_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015619001
           PE=4 SV=1
          Length = 269

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           DLFSD  LVGIFY++G   F LE LLSLWV++ +
Sbjct: 228 DLFSDHVLVGIFYLIGFALFCLEMLLSLWVIQKV 261


>tr|A9TRH7|A9TRH7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197515 PE=4 SV=1
          Length = 305

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 4   LFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           LF ++ LV IFY+VG V F LEALLS+WVLK +
Sbjct: 247 LFGENALVAIFYVVGFVLFTLEALLSIWVLKEV 279


>tr|A9RVB1|A9RVB1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178454 PE=4 SV=1
          Length = 281

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           DLFS   ++GIFY+VG   + LE LLS+WVLK +
Sbjct: 222 DLFSQKLIIGIFYMVGFALYTLETLLSIWVLKSV 255


>tr|A9PAD5|A9PAD5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 270

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D+ SD  LVGIFY+VG   F LE+LLSLWVL+ I
Sbjct: 229 DVISDHLLVGIFYLVGFGLFCLESLLSLWVLQKI 262


>tr|B7EZ37|B7EZ37_ORYSJ cDNA clone:001-208-F01, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 281

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D FSD  +VGIFY VG   F LE L+S+WVL+ +
Sbjct: 240 DTFSDHAIVGIFYFVGFALFCLETLVSIWVLQKV 273


>tr|B6TM90|B6TM90_MAIZE SC3 protein OS=Zea mays PE=2 SV=1
          Length = 272

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   DLFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           D FSD  +VGIFY VG   F LE L+S+WVL+ +
Sbjct: 231 DTFSDHAIVGIFYFVGFALFCLETLVSIWVLQKV 264


>tr|A9S5T7|A9S5T7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181545 PE=4 SV=1
          Length = 306

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +1

Query: 4   LFSDSTLVGIFYIVGTVCFVLEALLSLWVLKVI 102
           LF D+ LV IFY++G V F LE LLS+WV+K +
Sbjct: 248 LFGDNVLVAIFYVLGCVFFSLELLLSIWVIKEV 280