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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913474
Clone id YMU001_000030_F06
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTACCTCATGGGTGGTCTACATTGTTGTACTTTCGTAGAGTTGTCTCGAGGATGAAGGT
TTGTAAGAGTTCTGATCTTTGTGCTGAGCATTGGCAGAGATTTGAGGTTGTCTATTGGAT
GCCGCCAACGGTTATGAGCAGGGTGAAGATGGGACAGATTAAGTTCAAGGATGAAGGAGT
ATTTGAGCAGGGTGAGGAAGGGTCTGGTCTAGGCGCACATTTGGTTTTTTGCTTTGTCGT
GGTATCCTTGTCAAATTTTTGAGAGCAGCTGGAGACGAGCTGAGTTGGTCAGAGTTTTTC
TCCGTAATGTCATGAATGTCAGTTCTGTGGAACGAGGAAGAGAGTATTCAGAGCTGTTTT
GAGGTTGCTTGCTCCCGATTGTGGGTTATGGCAAATGTCTAGTTAGGAGCGGATGGGTTC
GTTCTTCTTGGCTCTCAAGGAGAATCAGGCATATGTTGAGGAAGACTCGTTGGGGTTATG
GTTGGATGTCAGGAACGAGCTGCAGCGTGGT
■■Homology search results ■■ -
sp_hit_id Q5A1Z5
Definition sp|Q5A1Z5|ATG13_CANAL Autophagy-related protein 13 OS=Candida albicans
Align length 90
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913474|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_F06.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5A1Z5|ATG13_CANAL Autophagy-related protein 13 OS=Candida al...    33   1.0  
sp|Q10033|YSI1_CAEEL Uncharacterized protein F15G9.1 OS=Caenorha...    32   1.7  
sp|O75626|PRDM1_HUMAN PR domain zinc finger protein 1 OS=Homo sa...    32   1.7  
sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laev...    32   1.7  
sp|Q8CIS0|CAR11_MOUSE Caspase recruitment domain-containing prot...    32   2.3  
sp|Q6CXW3|ATG7_KLULA Autophagy-related protein 7 OS=Kluyveromyce...    31   2.9  
sp|Q92954|PRG4_HUMAN Proteoglycan 4 OS=Homo sapiens GN=PRG4 PE=1...    31   2.9  
sp|Q8BHW6|SPT21_MOUSE Spermatogenesis-associated protein 21 OS=M...    31   3.9  
sp|Q86T24|KAISO_HUMAN Transcriptional regulator Kaiso OS=Homo sa...    31   3.9  
sp|Q80XG9|LRRT4_MOUSE Leucine-rich repeat transmembrane neuronal...    30   5.0  
sp|Q86VH4|LRRT4_HUMAN Leucine-rich repeat transmembrane neuronal...    30   5.0  
sp|Q9LJ74|FB161_ARATH F-box protein At3g18910 OS=Arabidopsis tha...    30   6.5  
sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyosteliu...    30   6.5  
sp|Q9H4D5|NXF3_HUMAN Nuclear RNA export factor 3 OS=Homo sapiens...    30   8.5  
sp|Q6BGV9|ATG7_DEBHA Autophagy-related protein 7 OS=Debaryomyces...    30   8.5  
sp|Q54S20|MED13_DICDI Mediator of RNA polymerase II transcriptio...    30   8.6  

>sp|Q5A1Z5|ATG13_CANAL Autophagy-related protein 13 OS=Candida
           albicans GN=ATG13 PE=3 SV=1
          Length = 761

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = -3

Query: 485 PTITPTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNREQATSKQL*ILSSSFHRTDIHDI 306
           P I   +   HM     +P  T+      + A   + E    +   +LSS FH+ D  + 
Sbjct: 226 PIINTRTNESHMTQKYFQPVHTSLGTLKISVAYRMDSEFCLHENEELLSSHFHKRDEEET 285

Query: 305 TEKNSDQLS--SSPAALKNLTRIPRQSKKP 222
            +K S  +S  SS  +LK  +  PR+S+ P
Sbjct: 286 KKKVSSSVSPLSSGTSLKETSTSPRKSQPP 315


>sp|Q10033|YSI1_CAEEL Uncharacterized protein F15G9.1
           OS=Caenorhabditis elegans GN=F15G9.1 PE=2 SV=1
          Length = 279

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 338 SSFHRTDIHDITEKNSDQLSSSPAALKNLTRIPRQSKKPNVRLDQTLPHPAQIL 177
           +S + TD+   T+K  D  S++P A   +  +   +K P    ++T+  P ++L
Sbjct: 60  ASKYSTDLGKSTDKGMDDYSAAPIAKDEIEELSYDAKTPTTPTEETVDAPREVL 113


>sp|O75626|PRDM1_HUMAN PR domain zinc finger protein 1 OS=Homo
           sapiens GN=PRDM1 PE=1 SV=1
          Length = 789

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
 Frame = -3

Query: 488 HPTITPTSLPQHMPD-------SP*EPRRTNPSAPN*TFAIT----HNREQATSKQL*IL 342
           HP + PTSLP  +P         P  PR     AP+  F+ T      +++A S      
Sbjct: 422 HPMLNPTSLPSSLPSDGARRLLQPEHPREVLVPAPHSAFSFTGAAASMKDKACSPTSGSP 481

Query: 341 SSSFHRTDIHDITEKNSDQLSSSPAALKNLTRIPRQSKKPNVRLDQTLPHP 189
           ++    T  H +  K +    ++P++ + +  I     K N+   +TLP+P
Sbjct: 482 TAGTAATAEHVVQPKATSAAMAAPSSDEAMNLI---KNKRNMTGYKTLPYP 529


>sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laevis
           GN=incenp-A PE=1 SV=1
          Length = 873

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 341 SSSFHRTDIHDITEKNSDQLSSSPAALKNLTRIPRQ-SKKPNVRLDQTLPH-PAQI 180
           SSS  R  + +  + N D +   PA LK +TR   Q S K    L+  LP  P+QI
Sbjct: 94  SSSVRRLSVRNQNKANDDSIQEEPAQLKRMTRARAQASIKSTPVLETALPESPSQI 149


>sp|Q8CIS0|CAR11_MOUSE Caspase recruitment domain-containing protein
           11 OS=Mus musculus GN=Card11 PE=2 SV=2
          Length = 1159

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = -3

Query: 383 HNREQA-TSKQL*ILSSSFHRTDIHDITEKNSD---QLSSSPAALKNLTRIPRQSKKPNV 216
           H+R++A T     ++    +R  I ++ EKN +   ++    A + NL    R+  K N 
Sbjct: 384 HSRDEAQTQYSQCLIEKDKYRKQIRELEEKNDEMRIEMVRREACIVNLESKLRRLSKDNG 443

Query: 215 RLDQTLPH--PAQIL 177
            LDQ+LP   PA I+
Sbjct: 444 SLDQSLPRHLPATII 458


>sp|Q6CXW3|ATG7_KLULA Autophagy-related protein 7 OS=Kluyveromyces
           lactis GN=ATG7 PE=3 SV=1
          Length = 603

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 238 DKAKNQMCA*TRPFLTLLKYSFILELNLSHLHPAHN 131
           D+  +QMC  TRP + LL  S  +EL +++L P+ N
Sbjct: 478 DRTLDQMCTVTRPGVALLAASQAVELLVTYLQPSTN 513


>sp|Q92954|PRG4_HUMAN Proteoglycan 4 OS=Homo sapiens GN=PRG4 PE=1 SV=2
          Length = 1404

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 31/154 (20%), Positives = 58/154 (37%)
 Frame = -3

Query: 473  PTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNREQATSKQL*ILSSSFHRTDIHDITEKN 294
            PT+  +  P +P EP  T P  P  T   T      T+ ++   +++   T IH   +++
Sbjct: 820  PTTPKETAPTTPKEPAPTTPKKPAPT---TPETPPPTTSEVSTPTTTKEPTTIHKSPDES 876

Query: 293  SDQLSSSPAALKNLTRIPRQSKKPNVRLDQTLPHPAQILLHXXXXXXXXXXXXXPLAASN 114
            + +LS+ P   K L   P++   P  +                              A+ 
Sbjct: 877  TPELSAEPTP-KALENSPKEPGVPTTKTPAATKPEMTTTAKDKTTERDLRTTPETTTAAP 935

Query: 113  RQPQISANAQHKDQNSYKPSSSRQLYESTTM*TT 12
            +  + +A    K   S   +++ Q+  +TT  TT
Sbjct: 936  KMTKETATTTEKTTESKITATTTQVTSTTTQDTT 969


>sp|Q8BHW6|SPT21_MOUSE Spermatogenesis-associated protein 21 OS=Mus
           musculus GN=Spata21 PE=2 SV=1
          Length = 681

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
 Frame = -3

Query: 485 PTITPTSLPQHMPDSP*E----PRRTNPSAPN*TFAITHNREQ--------------ATS 360
           PT  P++ P+   D P E    P +  PS     F  +  R Q              A  
Sbjct: 81  PTQEPSARPRTTQDGPRELQAGPEQVQPSGD---FVASEGRPQPAMQTKDQQKRWQSAEV 137

Query: 359 KQL*ILSSSFHRTDIHDITEKNSDQLSSSPAALKNLTRIPRQSKKPNVRLDQTLPHP 189
           K++ +  S    TD HD+ +       S P  LKN +  P ++ +P VRL + +P P
Sbjct: 138 KEILLAESCQGNTD-HDLGKPRPSNSRSQP--LKNNS--PSEAGRPQVRLQEPMPAP 189


>sp|Q86T24|KAISO_HUMAN Transcriptional regulator Kaiso OS=Homo
           sapiens GN=ZBTB33 PE=1 SV=2
          Length = 672

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
 Frame = -3

Query: 485 PTITPTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNREQATSKQL*ILSSSFHRTDIHDI 306
           P    +SLP HMP S       N    N          Q T     +  +  +  +  +I
Sbjct: 291 PPNVSSSLPNHMPSS------INLLVQN----------QQTPNSAILTGNKANEEEEEEI 334

Query: 305 TEKNSDQLSSSP-AALKNLTRIPRQSKKPNVRLDQTLPHPAQI 180
            + + D +SSSP +A+ N + +P+     N   D +L    QI
Sbjct: 335 IDDDDDTISSSPDSAVSNTSLVPQADTSQNTSFDGSLIQKMQI 377


>sp|Q80XG9|LRRT4_MOUSE Leucine-rich repeat transmembrane neuronal
           protein 4 OS=Mus musculus GN=Lrrtm4 PE=2 SV=2
          Length = 590

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 17/57 (29%)
 Frame = -1

Query: 136 HNRWRHPIDNLKSLPMLSTKIRTLTN-----------LHPRDNSTKV------QQCR 17
           HN+  HP+ NL++L +   K++TL +           LH R NS K       Q CR
Sbjct: 125 HNKTFHPVPNLRNLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCR 181
tr_hit_id A8K0J1
Definition tr|A8K0J1|A8K0J1_HUMAN cDNA FLJ76731, highly similar to Homo sapiens PR domain containing 1, with ZNF domain (PRDM1), transcript variant 1, mRNA OS=Homo sapiens
Align length 111
Score (bit) 33.9
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913474|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_F06.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8K0J1|A8K0J1_HUMAN cDNA FLJ76731, highly similar to Homo sap...    34   4.7  
tr|B4KDC3|B4KDC3_DROMO GI10248 OS=Drosophila mojavensis GN=GI102...    33   6.1  
tr|Q75JG6|Q75JG6_DICDI Similar to Leishmania major. Ppg3 OS=Dict...    33   8.0  
tr|Q552J1|Q552J1_DICDI Putative uncharacterized protein OS=Dicty...    33   8.0  

>tr|A8K0J1|A8K0J1_HUMAN cDNA FLJ76731, highly similar to Homo
           sapiens PR domain containing 1, with ZNF domain (PRDM1),
           transcript variant 1, mRNA OS=Homo sapiens PE=2 SV=1
          Length = 789

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
 Frame = -3

Query: 488 HPTITPTSLPQHMPD-------SP*EPRRTNPSAPN*TFAIT----HNREQATSKQL*IL 342
           HP + PTSLP  +P         P  PR     AP+  F+ T      +++A S      
Sbjct: 422 HPMLNPTSLPSSLPSDGARRLLQPEHPREVLVPAPHSAFSFTGAAASMKDKACSPTSGSP 481

Query: 341 SSSFHRTDIHDITEKNSDQLSSSPAALKNLTRIPRQSKKPNVRLDQTLPHP 189
           ++    T  H++  K +    ++P++ + +  I     K N+   +TLP+P
Sbjct: 482 TAGTAATAEHEVQPKATSAAMAAPSSDEAMNLI---KNKRNMTGYKTLPYP 529


>tr|B4KDC3|B4KDC3_DROMO GI10248 OS=Drosophila mojavensis GN=GI10248
            PE=4 SV=1
          Length = 4195

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 485  PTITPTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNRE-QATSKQL*ILSSSFHRTDIHD 309
            P +TP  LP H+   P +P   + S  + T + T  RE + TSKQL   SSSFH   +  
Sbjct: 3757 PIVTPNDLPGHVGAPPPKPLAKHHSYDDKTLSKTQIREFKTTSKQL-RQSSSFHEHMLSK 3815

Query: 308  ITEKNSD 288
              + + D
Sbjct: 3816 SQQSSQD 3822


>tr|Q75JG6|Q75JG6_DICDI Similar to Leishmania major. Ppg3
           OS=Dictyostelium discoideum PE=4 SV=1
          Length = 642

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = -3

Query: 485 PTITPTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNREQATSKQL*ILSSSFHRTDIHDI 306
           PT+TPT+     P +   P  TN S P  T + T     ++       +SSF+ +   + 
Sbjct: 451 PTLTPTNSSTPTPTNSSTPTPTNSSTPTPTNSSTPTPTNSSDPS---SASSFNSSSSFNS 507

Query: 305 TEKNSDQLSSSPAALKNLT 249
           T  ++  +S S ++L N T
Sbjct: 508 TSSSNSTISPSSSSLNNST 526


>tr|Q552J1|Q552J1_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0203522 PE=4 SV=1
          Length = 681

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = -3

Query: 485 PTITPTSLPQHMPDSP*EPRRTNPSAPN*TFAITHNREQATSKQL*ILSSSFHRTDIHDI 306
           PT+TPT+     P +   P  TN S P  T + T     ++       +SSF+ +   + 
Sbjct: 451 PTLTPTNSSTPTPTNSSTPTPTNSSTPTPTNSSTPTPTNSSDPS---SASSFNSSSSFNS 507

Query: 305 TEKNSDQLSSSPAALKNLT 249
           T  ++  +S S ++L N T
Sbjct: 508 TSSSNSTISPSSSSLNNST 526