BP913476
Clone id YMU001_000030_F08
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTCGATGACCACCCCAAGTGGAGGCAGAAGTGGTTGGACAAAAGGCCACAGGATCTAACA
AATTACCACAACGCTCCTCAACATATACAAATAGATCCTACATTCTACCCAGTCCCTCGA
AGACACACTTGGAAATATTTCACCACATGGAAGGGGTCAAGGCCGTACAAGCTAAATTAC
CCAGTTCTGACAGCGCAGCAACCCCCTACGGTGGCCTACATGGTCAGCACACTGAATTCA
ACAGTCACATTGCTGCGGGATGTCCCCAATTTGGCGTGCCAAATGTTAGTAAAGATATCC
CGGATGATCGTCACCTGTATCCAGGTGTTTAAAGACACTGAAGGCGACGATCATCCGTGG
AATCTGTTCTTGGAAGGACATAGAGGCATCTGTTGGAATCTACAGGATTCACCGCCACAA
CACATCTTGATGGCCATGTACTCCAGGATAATGTACCTACCCTCACACTACTTGCAGACA
TTTGAAGAGGCCTTCGTCTCACGGGATTCTTCGAAATGGATTCAAGGATTTTCCATCCCA
■■Homology search results ■■ -
sp_hit_id Q8C8Y5
Definition sp|Q8C8Y5|SAMD7_MOUSE Sterile alpha motif domain-containing protein 7 OS=Mus musculus
Align length 84
Score (bit) 33.1
E-value 0.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913476|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_F08.
(540 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8C8Y5|SAMD7_MOUSE Sterile alpha motif domain-containing prot... 33 0.90
sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis ele... 33 1.2
sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Ar... 32 2.6
sp|Q09YM8|CTTB2_RABIT Cortactin-binding protein 2 OS=Oryctolagus... 31 3.4
sp|Q8TVG5|SYV_METKA Valyl-tRNA synthetase OS=Methanopyrus kandle... 31 3.4
sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria paras... 31 3.4
sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabi... 31 4.4
sp|O33926|GYRA_THEMA DNA gyrase subunit A OS=Thermotoga maritima... 30 7.6
sp|Q6C9N2|SFH1_YARLI Chromatin structure-remodeling complex subu... 30 9.8
sp|A0KEJ0|NORR_AERHH Anaerobic nitric oxide reductase transcript... 30 9.8
sp|Q07DZ5|CTTB2_ORNAN Cortactin-binding protein 2 OS=Ornithorhyn... 30 9.8

>sp|Q8C8Y5|SAMD7_MOUSE Sterile alpha motif domain-containing protein
7 OS=Mus musculus GN=Samd7 PE=2 SV=3
Length = 441

Score = 33.1 bits (74), Expect = 0.90
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Frame = +1

Query: 322 QVFKDTEGDDHPWNLFLEGHR--------GICWNLQDSPPQHILMAMYSRIMYLPSHYLQ 477
QVFKD D L E H G +Q QH+ ++ LP+H Q
Sbjct: 340 QVFKDHAIDGETLPLLTEQHLRGTMGLKLGPALKIQSQVSQHVGNMFCKKLPSLPTHARQ 399

Query: 478 TFEEAFVSR---DSSKWIQGFSIP 540
F++ + D S W G SIP
Sbjct: 400 AFDQPADTSPLLDMSSWSDGLSIP 423


>sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis
elegans GN=F52H2.6 PE=2 SV=1
Length = 525

Score = 32.7 bits (73), Expect = 1.2
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Frame = +1

Query: 16 KWRQKWLDKRPQDLTNY-HNAPQHIQIDPTFYPVPRRHTWKYFTTWKGSRPYKLN--YPV 186
+W +KW +DL N H + ++I + ++ RH+ F + P+ N +
Sbjct: 307 RWYKKWFYTHVEDLINKKHESIEYIPLRDYYH----RHSKSIFWELRDIVPFGNNVLFRY 362

Query: 187 LTAQQ-PPTVAYMVSTLNSTVTLLRDVPNLACQMLVKISRMIVTCIQVF 330
L A PP +A++ +T + + L D ++ MLV + + + CI +F
Sbjct: 363 LMAWMCPPKIAFLKATTPNVLRKLYDRSHVLQDMLVPLDK-LEECIDLF 410


>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3
OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1
Length = 839

Score = 31.6 bits (70), Expect = 2.6
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3

Query: 147 MEGVKAVQAKLPSSDSAATPYGGLHGQHTEFNSHIAAGCPQFGVPNVSKDIPDD 308
M+G++ + + PS DS P G+HGQ +F F N S DI DD
Sbjct: 780 MQGLRQLNSIAPSYDSYYGPQQGIHGQGVDF----------FRPANFSYDIRDD 823


>sp|Q09YM8|CTTB2_RABIT Cortactin-binding protein 2 OS=Oryctolagus
cuniculus GN=CTTNBP2 PE=3 SV=1
Length = 1664

Score = 31.2 bits (69), Expect = 3.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3

Query: 538 GWKILESISKNPVRRRPLQMSASSVRVGTLSWSTWPSRCVVAVNPVD 398
GW LE ++ N + +SASSVR TL WP+ A +P D
Sbjct: 1029 GWWSLEDVAFNNTTDSSIGLSASSVRSITLGNMPWPAGRSFAPSPWD 1075


>sp|Q8TVG5|SYV_METKA Valyl-tRNA synthetase OS=Methanopyrus kandleri
GN=valS PE=3 SV=1
Length = 914

Score = 31.2 bits (69), Expect = 3.4
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1

Query: 13 PKWRQKWLDKRPQDLTNYHNAPQHIQIDPTFYPVPRRH-----TWKY 138
PKWR++WL++R + P + P YP H W Y
Sbjct: 17 PKWRERWLEERKYRFEGGEDRPAFVIDTPPPYPTGELHMGHVLNWTY 63


>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica
GN=DCL-1 PE=3 SV=1
Length = 1548

Score = 31.2 bits (69), Expect = 3.4
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Frame = +1

Query: 1 VDDHPKWRQKWLDKRPQDLTNYHNAPQHIQIDPTFYPVPRRHT------WKYFTTWKGSR 162
VD H R+ WL +DLT P ++ PT RR W T WK +R
Sbjct: 899 VDPHDGARRFWLQGIRKDLTCTSPVPADVEHQPTHRQWKRREVPHDILHWS-LTAWKATR 957

Query: 163 -----PYKLNYPVLTAQQPPTVAYMVSTLNST 243
+K N PV+ + ++ +N T
Sbjct: 958 EAHENKWKENQPVVVGKYATLRRNFLADINET 989


>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620
OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=1
Length = 543

Score = 30.8 bits (68), Expect = 4.4
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3

Query: 21 EAEVVGQKATGSNKLPQRSSTYTNRSYILPSPSKTHLEIFHHMEGVKAVQAKLPSSDSAA 200
E E V + + +NK P+ TN++ ++ +TH + + PSS A
Sbjct: 435 EEEDVKPENSNNNKKPENECATTNKNDVMGEMIRTHRRLLSETREIDEASCNFPSSRRQA 494

Query: 201 TP 206
+P
Sbjct: 495 SP 496


>sp|O33926|GYRA_THEMA DNA gyrase subunit A OS=Thermotoga maritima
GN=gyrA PE=3 SV=2
Length = 804

Score = 30.0 bits (66), Expect = 7.6
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Frame = +1

Query: 157 SRPYKLNYPVLTAQ---------QPPTVAYMVSTLNSTVTLLRDVPNLACQMLVKISRMI 309
++P+ + YP++ Q P + Y + L LA +ML I +
Sbjct: 90 AQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLT----------RLAEEMLEDIEKNT 139

Query: 310 VTCIQVFKDTEGDDHPW-----NLFLEGHRGICWNLQDSPPQHILMAMYSRIMYLPSHYL 474
V I F T + NL + G GI + + P H L ++YL H
Sbjct: 140 VNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIYLIDHPE 199

Query: 475 QTFEE 489
T EE
Sbjct: 200 ATVEE 204


>sp|Q6C9N2|SFH1_YARLI Chromatin structure-remodeling complex subunit
SFH1 OS=Yarrowia lipolytica GN=SFH1 PE=3 SV=1
Length = 441

Score = 29.6 bits (65), Expect = 9.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +3

Query: 57 NKLPQRSSTYTNRSYI-LPS-----PSKTHLEIFHHMEGVKAVQAKLPSSDSAATPYGGL 218
N++ + + +Y N +I LPS PS+ + V + LP S ++P
Sbjct: 6 NRIGRANISYINHDHIFLPSFQPSYPSRQLHPLISSQNKVHSSIVHLPKVASPSSPETQQ 65

Query: 219 HGQHTEFNSHIAAGCPQ 269
H Q F +HI +G PQ
Sbjct: 66 HSQAPLFITHIMSGLPQ 82


>sp|A0KEJ0|NORR_AERHH Anaerobic nitric oxide reductase transcription
regulator norR OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=norR PE=3 SV=1
Length = 508

Score = 29.6 bits (65), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3

Query: 174 KLPSSDSAATPYGGLHGQHTEFNSHIAAGCPQF 272
+ P+ S PY GL H +F H G P F
Sbjct: 86 RFPADSSLPDPYDGLLPDHDDFKVHACVGLPLF 118


tr_hit_id B3XLS1
Definition tr|B3XLS1|B3XLS1_LACRE Integrase family protein OS=Lactobacillus reuteri 100-23
Align length 72
Score (bit) 36.6
E-value 0.86
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913476|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_F08.
(540 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3XLS1|B3XLS1_LACRE Integrase family protein OS=Lactobacillus... 37 0.86
tr|Q0U2M0|Q0U2M0_PHANO Putative uncharacterized protein OS=Phaeo... 35 2.5
tr|A0CLB1|A0CLB1_PARTE Chromosome undetermined scaffold_20, whol... 35 2.6
tr|Q6P282|Q6P282_XENLA MGC69056 protein OS=Xenopus laevis GN=MGC... 33 7.3
tr|B6HM51|B6HM51_PENCH Pc21g17200 protein OS=Penicillium chrysog... 33 9.7

>tr|B3XLS1|B3XLS1_LACRE Integrase family protein OS=Lactobacillus
reuteri 100-23 GN=Lreu23DRAFT_3891 PE=4 SV=1
Length = 328

Score = 36.6 bits (83), Expect = 0.86
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3

Query: 84 YTNRSYILPSPSKTHLEIFHHMEGVK---AVQAKLPSSDSAATPYGGLHGQHTEFNSHIA 254
Y+ R ++ + T L+ H++GVK ++ A +SDS GG H ++ FN +
Sbjct: 199 YSVRQILIDFKALTDLQ--RHLDGVKEDESIWAHWYASDSRTNTRGGNHIYNSVFNKELK 256

Query: 255 AGCPQFGVPNVS 290
C Q GVP +S
Sbjct: 257 EMCDQAGVPPIS 268


>tr|Q0U2M0|Q0U2M0_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_14013 PE=4 SV=1
Length = 511

Score = 35.0 bits (79), Expect = 2.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3

Query: 72 RSSTYTNRSYILPSPSKTHLEIFHHMEGVKAV---QAKLPSSDSAATPYGGLHGQHTEFN 242
R++T + LPSPS+ EI+H +E K + A +S S+ P G + G + +
Sbjct: 50 RTATPPHAQQPLPSPSEARSEIYHSLEDAKPILEGPATPATSASSPLPPGSVIGANAPIS 109

Query: 243 SHIAAGCPQFGVP 281
+ + C P
Sbjct: 110 GQVCSNCKTTQTP 122


>tr|A0CLB1|A0CLB1_PARTE Chromosome undetermined scaffold_20, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00008125001 PE=4 SV=1
Length = 1131

Score = 35.0 bits (79), Expect = 2.6
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1

Query: 184 VLTAQQPPTVAYMVSTLNSTVTLLRDVPNLACQMLVKISRMIVTCIQVFKDTEGDDHPWN 363
VLT Q T M+S L ST+ L++ PNLA + S++++ VF + P+N
Sbjct: 611 VLTVLQEATQDQMISILESTIHLVKFSPNLATTLAKSGSKVLLQFFSVFHSEQSVIKPFN 670


>tr|Q6P282|Q6P282_XENLA MGC69056 protein OS=Xenopus laevis
GN=MGC69056 PE=2 SV=1
Length = 1102

Score = 33.5 bits (75), Expect = 7.3
Identities = 30/91 (32%), Positives = 44/91 (48%)
Frame = +3

Query: 24 AEVVGQKATGSNKLPQRSSTYTNRSYILPSPSKTHLEIFHHMEGVKAVQAKLPSSDSAAT 203
AE +G+ A S S Y NR ILPS S+T + + E ++ +S S++T
Sbjct: 542 AEELGRTAVTS------SVPYQNRLPILPSKSRTLKKKVENKENIEGTGDSSDNSTSSST 595

Query: 204 PYGGLHGQHTEFNSHIAAGCPQFGVPNVSKD 296
P G LHG S +A+G P +P +D
Sbjct: 596 P-GLLHG------SPVASGSP--ALPRKQRD 617


>tr|B6HM51|B6HM51_PENCH Pc21g17200 protein OS=Penicillium
chrysogenum Wisconsin 54-1255 GN=Pc21g17200 PE=4 SV=1
Length = 1048

Score = 33.1 bits (74), Expect = 9.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1

Query: 286 LVKISRMIVTCIQVFKDTEGDDHPWNLFLEGHRGICW 396
LV+ +IV C VFK+T+ D WN+ G CW
Sbjct: 591 LVRAESIIVRCFNVFKNTQPKDPTWNIM--GMMNNCW 625