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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913483
Clone id YMU001_000030_G03
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAACCTGTACAAGGCCATCACAATTATGACCTCAATCAACGTCCACTGGCTCACTGAA
TAGAGCGATCGATCACATACTTCTCACCAAAGCCGCGCACATCACACATGTATCTCATCA
TACGCTGCAAAGTACCCCTATGCTCAAGGCTAACGACATTCATTGCACGGCTAACTGCTC
CCACTACAAATGCACCTATTGAAAATGCAATCTCGGGTCCCGAGATCAGTATCTCGTACA
TGGGACTAGAAAATCTTATGCAATCCTAGCAATCTCTGCCAATCTGACCATCTTAGCGAA
ATCTGGCTCAAAACTCTGCTCATGGAAATCAATCTAAAATTTGAACTCCGTCCTTGGAAT
CCATCCTCGTGTCCATCATATATCACATGCCACCAAGAGCACCTACATGTCCTAAACCCT
AGGAGGCAAGAGAAATGCCTAGTTCTAACTCACATGCATTAGCCTTTGGTTTAAGCATAT
CCATGAATGACAGAATCACGAGCAAATCCTCAACACTCAAGCCATCCATATCCATCATCA
TCA
■■Homology search results ■■ -
sp_hit_id Q1E873
Definition sp|Q1E873|PAN2_COCIM PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Coccidioides immitis
Align length 64
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913483|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_G03.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1E873|PAN2_COCIM PAB-dependent poly(A)-specific ribonuclease...    31   3.4  
sp|Q8C3P7|MTA70_MOUSE N6-adenosine-methyltransferase 70 kDa subu...    31   4.5  
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engr...    30   7.6  

>sp|Q1E873|PAN2_COCIM PAB-dependent poly(A)-specific ribonuclease
           subunit PAN2 OS=Coccidioides immitis GN=PAN2 PE=3 SV=2
          Length = 1222

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -3

Query: 262 CIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGE 83
           C+ F++  ++I+++G + A  I     GA+   ++ +S E+R T+ +  RY+C     G 
Sbjct: 111 CMSFTAQPHKIIVAGLQSAMFIIDVEKGAI---VDQLSTEYRYTIMKRSRYLCAATDTGS 167

Query: 82  KYVI 71
             V+
Sbjct: 168 VNVL 171


>sp|Q8C3P7|MTA70_MOUSE N6-adenosine-methyltransferase 70 kDa subunit
           OS=Mus musculus GN=Mettl3 PE=2 SV=2
          Length = 580

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 75  TYFSPKPRTSHMYLIIRCKVPLCSRLTTFIA--RLTAPTTNAPIENAISGPEISISYMGL 248
           T   PKP T+ +   +     L  +L   ++   LT PT    I  AIS P+   +  G+
Sbjct: 57  TSSGPKPSTTSVAPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGV 116

Query: 249 ENLMQS*QSLPI*PS*RNLAQNSAH 323
           E+L+Q   +  +    R L Q+ AH
Sbjct: 117 ESLLQKFAAQELIEVKRGLLQDDAH 141


>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein
           engrailed OS=Drosophila melanogaster GN=en PE=1 SV=2
          Length = 552

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 358 NPSSCPSYITCHQEHLHVLNPRRQEKCLVLTHMH 459
           +P S PS IT   +HLH    ++Q++   + H+H
Sbjct: 8   SPQSAPSPITLQMQHLHHQQQQQQQQQQQMQHLH 41
tr_hit_id Q7XUD9
Definition tr|Q7XUD9|Q7XUD9_ORYSJ OSJNBa0088A01.6 protein OS=Oryza sativa subsp. japonica
Align length 62
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913483|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_G03.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XUD9|Q7XUD9_ORYSJ OSJNBa0088A01.6 protein OS=Oryza sativa s...    35   2.0  
tr|Q0JAR5|Q0JAR5_ORYSJ Os04g0582400 protein OS=Oryza sativa subs...    35   2.0  
tr|Q0DC67|Q0DC67_ORYSJ Os06g0477500 protein OS=Oryza sativa subs...    35   2.0  
tr|A5AL21|A5AL21_VITVI Putative uncharacterized protein OS=Vitis...    35   2.0  
tr|A5AKY6|A5AKY6_VITVI Putative uncharacterized protein OS=Vitis...    35   2.0  
tr|Q7XWP2|Q7XWP2_ORYSJ OSJNBa0032B23.6 protein OS=Oryza sativa s...    34   4.4  
tr|Q53P77|Q53P77_ORYSJ Retrotransposon protein, putative, unclas...    34   4.4  
tr|Q2R8K9|Q2R8K9_ORYSJ Retrotransposon protein, putative, unclas...    34   5.7  
tr|Q2R0F6|Q2R0F6_ORYSJ Retrotransposon protein, putative, unclas...    33   7.4  
tr|B6PGB0|B6PGB0_BRAFL Putative uncharacterized protein OS=Branc...    33   7.4  
tr|B6L4B0|B6L4B0_BRAFL Putative uncharacterized protein OS=Branc...    33   7.4  

>tr|Q7XUD9|Q7XUD9_ORYSJ OSJNBa0088A01.6 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0088A01.6 PE=4 SV=2
          Length = 1403

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 262  CIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGE 83
            C+R+      ++ + P+IAFS     VG VSR M   + EH   ++R++RY+     FG 
Sbjct: 1184 CLRY------LVHTRPDIAFS-----VGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGC 1232

Query: 82   KY 77
             Y
Sbjct: 1233 HY 1234


>tr|Q0JAR5|Q0JAR5_ORYSJ Os04g0582400 protein OS=Oryza sativa subsp.
            japonica GN=Os04g0582400 PE=4 SV=1
          Length = 1444

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 262  CIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGE 83
            C+R+      ++ + P+IAFS     VG VSR M   + EH   ++R++RY+     FG 
Sbjct: 1225 CLRY------LVHTRPDIAFS-----VGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGC 1273

Query: 82   KY 77
             Y
Sbjct: 1274 HY 1275


>tr|Q0DC67|Q0DC67_ORYSJ Os06g0477500 protein OS=Oryza sativa subsp.
            japonica GN=Os06g0477500 PE=4 SV=1
          Length = 1595

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 262  CIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGE 83
            C+R+      ++ + P+IAFS     VG VSR M   + EH   ++R++RY+     FG 
Sbjct: 1235 CLRY------LVHTRPDIAFS-----VGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGC 1283

Query: 82   KY 77
             Y
Sbjct: 1284 HY 1285


>tr|A5AL21|A5AL21_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_031870 PE=4 SV=1
          Length = 1274

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 193  AFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGEKY 77
            AF VG +SR M+  S +H G  +R++RY+     FG  Y
Sbjct: 1066 AFAVGVISRFMHCPSKQHLGAAKRLLRYIAGTYDFGIWY 1104


>tr|A5AKY6|A5AKY6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034722 PE=4 SV=1
          Length = 1056

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = +1

Query: 277 CQSDHLSEIWLKTLLMEINLKFELRPWNPSSCPSYITCHQEHLHVLNPRRQEKCLVLTHM 456
           C+ DH+SE W+K LL +  L  EL+  +   C S I   Q+++  L  RR  K   L  +
Sbjct: 380 CRLDHMSEKWMKMLLSKGKLP-ELKSIDFDMCESCILEKQKNVSFLKTRRTLKAEKLELV 438

Query: 457 H*PLV 471
           H  LV
Sbjct: 439 HTDLV 443


>tr|Q7XWP2|Q7XWP2_ORYSJ OSJNBa0032B23.6 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0032B23.6 PE=4 SV=2
          Length = 1149

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 193  AFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGEKY 77
            AF+VG VSR M   + EH   ++R++RY+     +G +Y
Sbjct: 976  AFLVGYVSRFMEKPTTEHMAAVKRVLRYIAGTTNYGCQY 1014


>tr|Q53P77|Q53P77_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g06960 PE=4 SV=1
          Length = 1385

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 193  AFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVRGFGEKYV 74
            A+ VG VSR M   ++EH   ++R++RY+    G+G  Y+
Sbjct: 1178 AYYVGYVSRFMEKPTVEHLAAVKRVLRYIASTIGYGCHYM 1217


>tr|Q2R8K9|Q2R8K9_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g11830 PE=4 SV=1
          Length = 588

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -3

Query: 274 DC*DCIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVR 95
           D  D  R    +  ++ S P++AFS     VG VSR     + EH   ++R++RY+    
Sbjct: 440 DATDYRRIMGSLRYLVNSRPDLAFS-----VGYVSRFTKKPTTEHMAAVKRVLRYIASTT 494

Query: 94  GFGEKY 77
            +G +Y
Sbjct: 495 NYGCQY 500


>tr|Q2R0F6|Q2R0F6_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g42720 PE=4 SV=1
          Length = 1385

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -3

Query: 274 DC*DCIRFSSPMYEILISGPEIAFSIGAFVVGAVSRAMNVVSLEHRGTLQRMMRYMCDVR 95
           D  D  R    +  ++ S P++A++     VG VSR M   ++EH  T++R++RY+    
Sbjct: 407 DATDYRRIMGSLCYLVNSRPDLAYA-----VGYVSRFMEKPTVEHLATMKRVLRYITGTI 461

Query: 94  GFG 86
            +G
Sbjct: 462 NYG 464


>tr|B6PGB0|B6PGB0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_131458 PE=4 SV=1
          Length = 427

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 96  RTSHMYLIIRCKVPLCSRLTTFIARLTAPTTNAPIENAISGPEISISYMGLENLM 260
           R   + L +RC VP  S     + R+  P     +   +SGP  S+ +   E+L+
Sbjct: 291 RDMELVLKLRCDVPSTSHAVNVMVRVPVPKATTSVSQQLSGPGQSVEFKAQEHLV 345