BP913484 |
Clone id |
YMU001_000030_G04 |
Library |
YMU01 |
Length |
521 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000030_G04. |
Accession |
BP913484 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAAGTCTTCAGCAAAATGCAGCAGGTAAAGGGTAGCAGAACTATTTTGAAGTGAATACAT AATTTCCTTGTGTAAGATTGGGCTGACATTTGGGTTTCGTGTTTTGGTTCAATAATATGT GATTTTGTGCTATGGATTCGTGAATGGAAAACCGACTGATAGGACGAAATTTTGCTGAAT GATGAGAGCCTGTGGCAGCTGATGAACCTACACAAACAAGGTTTTTCCTACTATTATATG GCATACTCTCATTTGAGGAAAAAGAATTGGATTGTTCGCTCCGGGCTTCAGTATGGAGTA CATTACATTGCATACCGACATCATCCATCCCACGTCCATGCAAAGTTTGTGCTGTTTCCA TTTTGTCATAAGTTATTTTTCTTGGATTAGAAATACTTGCTTTGGTGTGGTGAAGAAGTA AGGTGAATTATGCAGCTATTCTGTGTTAGTCGTCCCTGATTGGGAGAGGCAAATACAATT GGATTCTTGGAGCCATATGCAAGGCATCATCCGCCTGTGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M1E8 |
Definition |
sp|Q9M1E8|SEN21_ARATH tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana |
Align length |
61 |
Score (bit) |
84.0 |
E-value |
4.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NZD7 |
Definition |
tr|A7NZD7|A7NZD7_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
64 |
Score (bit) |
87.8 |
E-value |
3.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913484|Adiantum capillus-veneris mRNA, clone: YMU001_000030_G04. (521 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NZD7|A7NZD7_VITVI Chromosome chr6 scaffold_3, whole genome ... 88 3e-16 tr|A2Q3E8|A2Q3E8_MEDTR TRNA intron endonuclease, catalytic C-ter... 86 8e-16 tr|Q2HIF6|Q2HIF6_ARATH At3g45590 OS=Arabidopsis thaliana PE=2 SV=1 84 4e-15 tr|A9PAQ8|A9PAQ8_POPTR Putative uncharacterized protein OS=Popul... 82 1e-14 tr|A9S7Q0|A9S7Q0_PHYPA Predicted protein OS=Physcomitrella paten... 75 3e-13 tr|Q2R1K2|Q2R1K2_ORYSJ Os11g0602400 protein OS=Oryza sativa subs... 76 1e-12 tr|Q0DBS8|Q0DBS8_ORYSJ Os06g0530700 protein OS=Oryza sativa subs... 74 6e-12 tr|B8B3A8|B8B3A8_ORYSI Putative uncharacterized protein OS=Oryza... 74 6e-12 tr|B6T9E3|B6T9E3_MAIZE tRNA-splicing endonuclease subunit Sen2 O... 70 6e-11 tr|Q5M907|Q5M907_XENTR Tsen2 protein (Fragment) OS=Xenopus tropi... 53 1e-05 tr|Q0IF42|Q0IF42_AEDAE Putative uncharacterized protein OS=Aedes... 52 1e-05 tr|Q6GPB4|Q6GPB4_XENLA MGC80553 protein OS=Xenopus laevis GN=tse... 51 3e-05 tr|B8BLA7|B8BLA7_ORYSI Putative uncharacterized protein OS=Oryza... 50 5e-05 tr|B4JEH8|B4JEH8_DROGR GH11377 OS=Drosophila grimshawi GN=GH1137... 50 5e-05 tr|B0W5P2|B0W5P2_CULQU tRNA-splicing endonuclease subunit Sen2 O... 50 9e-05 tr|A8I2B8|A8I2B8_CHLRE Predicted protein OS=Chlamydomonas reinha... 49 1e-04 tr|Q1PS47|Q1PS47_BOVIN TRNA spicing endonuclease 2-like protein ... 49 2e-04 tr|A6H7E5|A6H7E5_BOVIN tRNA splicing endonuclease 2 homolog (S. ... 49 2e-04 tr|B7QA69|B7QA69_IXOSC tRNA-splicing endonuclease subunit Sen2, ... 49 2e-04 tr|Q6CJB7|Q6CJB7_KLULA KLLA0F19866p OS=Kluyveromyces lactis GN=K... 48 3e-04 tr|A2QUM6|A2QUM6_ASPNC Complex: the S. cerevisiae SEN2 forms a t... 47 4e-04 tr|Q08BW3|Q08BW3_DANRE Zgc:154067 OS=Danio rerio GN=zgc:154067 P... 47 6e-04 tr|A8E5A8|A8E5A8_DANRE Zgc:154067 protein OS=Danio rerio GN=zgc:... 47 6e-04 tr|B4KG57|B4KG57_DROMO GI18082 OS=Drosophila mojavensis GN=GI180... 47 6e-04 tr|Q1DSS4|Q1DSS4_COCIM Putative uncharacterized protein OS=Cocci... 47 6e-04 tr|B8M9R2|B8M9R2_9EURO tRNA-splicing endonuclease subunit Sen2, ... 47 6e-04 tr|B6QFV8|B6QFV8_PENMA tRNA-splicing endonuclease subunit Sen2, ... 47 6e-04 tr|B4LSR7|B4LSR7_DROVI GJ16733 OS=Drosophila virilis GN=GJ16733 ... 47 7e-04 tr|B7Z6K1|B7Z6K1_HUMAN cDNA FLJ58327, highly similar to tRNA-spl... 47 7e-04 tr|B7Z355|B7Z355_HUMAN cDNA FLJ55685, highly similar to tRNA-spl... 47 7e-04
>tr|A7NZD7|A7NZD7_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024474001 PE=4 SV=1 Length = 242
Score = 87.8 bits (216), Expect = 3e-16 Identities = 37/64 (57%), Positives = 48/64 (75%) Frame = +1
Query: 163 DEILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHA 342 D L NDE LWQ M ++ F +YMAYSHLR KNW+VRSG QYGV ++AYRHHP+ VH+ Sbjct: 98 DNHLKNDEELWQYMKSRRETFPDFYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHS 157
Query: 343 KFVL 354 ++ + Sbjct: 158 EYAV 161
>tr|A2Q3E8|A2Q3E8_MEDTR TRNA intron endonuclease, catalytic C-terminal OS=Medicago truncatula GN=MtrDRAFT_AC155881g9v1 PE=4 SV=1 Length = 246
Score = 86.3 bits (212), Expect = 8e-16 Identities = 36/65 (55%), Positives = 44/65 (67%) Frame = +1
Query: 175 LNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHAKFVL 354 LNDE LW K+ F Y+Y AYSHLR KNW+VRSG QYGV I YRHHP+ VH+++ + Sbjct: 111 LNDEELWHYFRSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGV 170
Query: 355 FPFCH 369 H Sbjct: 171 LVLSH 175
>tr|Q2HIF6|Q2HIF6_ARATH At3g45590 OS=Arabidopsis thaliana PE=2 SV=1 Length = 237
Score = 84.0 bits (206), Expect = 4e-15 Identities = 36/61 (59%), Positives = 46/61 (75%) Frame = +1
Query: 172 LLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHAKFV 351 L N+ LW+ M+ KQ F+ Y AYSHLR KNWIVRSGLQYGV ++ YRHHPS VH+++ Sbjct: 101 LENEVDLWRSMSSFKQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYA 160
Query: 352 L 354 + Sbjct: 161 V 161
>tr|A9PAQ8|A9PAQ8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 235
Score = 82.4 bits (202), Expect = 1e-14 Identities = 34/64 (53%), Positives = 46/64 (71%) Frame = +1
Query: 163 DEILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHA 342 D + ND LW M L K+ F +Y AYSHLR KNW++R GLQYGV ++AY+HHPS VH+ Sbjct: 98 DNFVKNDLDLWLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHS 157
Query: 343 KFVL 354 ++ + Sbjct: 158 EYAV 161
>tr|A9S7Q0|A9S7Q0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_125452 PE=4 SV=1 Length = 248
Score = 75.5 bits (184), Expect(2) = 3e-13 Identities = 29/62 (46%), Positives = 44/62 (70%) Frame = +1
Query: 169 ILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHAKF 348 ++L+ E +W+ M K F Y+AY+HLR K W+VRSG+QYG ++AYRHHP+ VH+ + Sbjct: 101 VVLSKEEVWRCMQASKPEFGQLYIAYAHLRAKQWVVRSGIQYGADFMAYRHHPALVHSDY 160
Query: 349 VL 354 + Sbjct: 161 AV 162
Score = 23.1 bits (48), Expect(2) = 3e-13 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +2
Query: 437 YSVLVVPDWERQIQLDSWSHMQGIIRLC 520 Y+V+V+ + + ++ +W+ MQ + RLC Sbjct: 160 YAVIVMVEGHEE-RMKTWTEMQAMNRLC 186
>tr|Q2R1K2|Q2R1K2_ORYSJ Os11g0602400 protein OS=Oryza sativa subsp. japonica GN=Os11g0602400 PE=2 SV=1 Length = 292
Score = 75.9 bits (185), Expect = 1e-12 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = +1
Query: 163 DEILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHA 342 D+ ++D+ LW + F Y AYSHLR KNW+VRSGLQYG +++YRHHP+ VH+ Sbjct: 107 DKKQMSDKQLWNHFRSMSESFPEMYKAYSHLRFKNWVVRSGLQYGADFVSYRHHPALVHS 166
Query: 343 KFVL 354 +F + Sbjct: 167 EFAV 170
>tr|Q0DBS8|Q0DBS8_ORYSJ Os06g0530700 protein OS=Oryza sativa subsp. japonica GN=Os06g0530700 PE=2 SV=1 Length = 293
Score = 73.6 bits (179), Expect = 6e-12 Identities = 30/64 (46%), Positives = 42/64 (65%) Frame = +1
Query: 163 DEILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHA 342 D +++ LW + F Y AY+HLR KNW+VRSGLQYG ++AYRHHP+ VH+ Sbjct: 107 DNKQMSEIELWDYFRSGSESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHS 166
Query: 343 KFVL 354 +F + Sbjct: 167 EFAV 170
>tr|B8B3A8|B8B3A8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_23228 PE=4 SV=1 Length = 425
Score = 73.6 bits (179), Expect = 6e-12 Identities = 30/64 (46%), Positives = 42/64 (65%) Frame = +1
Query: 163 DEILLNDESLWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHA 342 D +++ LW + F Y AY+HLR KNW+VRSGLQYG ++AYRHHP+ VH+ Sbjct: 239 DNKQMSEIELWDYFRSGSESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHS 298
Query: 343 KFVL 354 +F + Sbjct: 299 EFAV 302
>tr|B6T9E3|B6T9E3_MAIZE tRNA-splicing endonuclease subunit Sen2 OS=Zea mays PE=2 SV=1 Length = 335
Score = 70.1 bits (170), Expect = 6e-11 Identities = 29/55 (52%), Positives = 39/55 (70%) Frame = +1
Query: 190 LWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHAKFVL 354 LW L+ + F Y AY +LR KNW+VRSGLQYG ++AYRHHP+ VH++F + Sbjct: 147 LWGLLASGSEQFPEMYRAYQYLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFTV 201
>tr|Q5M907|Q5M907_XENTR Tsen2 protein (Fragment) OS=Xenopus tropicalis GN=tsen2 PE=2 SV=1 Length = 493
Score = 52.8 bits (125), Expect = 1e-05 Identities = 21/53 (39%), Positives = 30/53 (56%) Frame = +1
Query: 190 LWQLMNLHKQGFSYYYMAYSHLRKKNWIVRSGLQYGVHYIAYRHHPSHVHAKF 348 LW++ + + FS YMAY H R K W+ + GL+YG + YR P HA + Sbjct: 356 LWEVFSAAQASFSTTYMAYHHFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASY 408
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