BP913490 |
Clone id |
YMU001_000030_G10 |
Library |
YMU01 |
Length |
460 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000030_G10. |
Accession |
BP913490 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATTCGCGGCCGCGAATGCCGCATCTATGTTCTTGATGTAAACAACGATCCGGGTTTGCCT GGCATGGCTTTGGTGCATAGTCACCCACATGTTCATCAACCTGGGCAGAAAGCAGAAAGA CTGTGTCATGCCTAGCTAGAGCTAATGGATTGGGAGAGTTGGAACCATTAAGTCTTATAT ATGGATGGGGCAGTCAGAAAAATAACAATCACACAGCCGCATATTGTCATGCCTTACTTA CCCAGCAATCGGCTGCACCAGTTGAGGATGGAGCTCGTCATCCCTCAGATCTTCGATGGC TTCCAAGGTAGATGCTATCCCATGATTGCATACCAGGATGAGGGAATGTAATCTCTTAAC CTCATCACGGGTCTTGTCAATGTCTGCTGCATCCTCCCCTCTCATCTCCTGCCGTCTCAA CAAGCTGCATTTCTTGTGTTGCTCAGCACGCAGAGCCTCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7V215 |
Definition |
sp|Q7V215|ISPG_PROMP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4) |
Align length |
72 |
Score (bit) |
31.6 |
E-value |
1.5 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913490|Adiantum capillus-veneris mRNA, clone: YMU001_000030_G10. (444 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q7V215|ISPG_PROMP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate... 32 1.5 sp|Q9PJW4|UBIE_CHLMU Menaquinone biosynthesis methyltransferase ... 30 4.5 sp|Q250M5|RL16_DESHY 50S ribosomal protein L16 OS=Desulfitobacte... 30 5.9 sp|A2QRG2|END3_ASPNC Actin cytoskeleton-regulatory complex prote... 30 5.9 sp|Q7MMN0|ZNUC_VIBVY Zinc import ATP-binding protein znuC OS=Vib... 30 6.0 sp|Q8DFQ4|ZNUC_VIBVU Zinc import ATP-binding protein znuC OS=Vib... 30 6.0 sp|Q8BLI4|DSE_MOUSE Dermatan-sulfate epimerase OS=Mus musculus G... 29 7.7 sp|Q9UL01|DSE_HUMAN Dermatan-sulfate epimerase OS=Homo sapiens G... 29 7.7 sp|P0C2H4|DSE_BOVIN Dermatan-sulfate epimerase OS=Bos taurus GN=... 29 7.7 sp|Q61180|SCNNA_MOUSE Amiloride-sensitive sodium channel subunit... 29 7.8 sp|Q9NQ36|SCUB2_HUMAN Signal peptide, CUB and EGF-like domain-co... 29 10.0
>sp|Q7V215|ISPG_PROMP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4) GN=ispG PE=3 SV=1 Length = 405
Score = 31.6 bits (70), Expect = 1.5 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -2
Query: 404 LRRQEMRGEDAADIDKTRDEVKRLHSL---ILVCNHGIASTLEAIEDLRDDELHPQLVQP 234 +R Q M ED D+D + +KRLH + I+ + +A+ D+++ + + P Sbjct: 41 VRVQSMINEDTMDVDNSYLAIKRLHEVGCEIVRLTVPSLAHAKAVGDIKEKLIKNNIDTP 100
Query: 233 IAG*VRHDNMRL 198 + V H+ M++ Sbjct: 101 LVADVHHNGMKI 112
>sp|Q9PJW4|UBIE_CHLMU Menaquinone biosynthesis methyltransferase ubiE OS=Chlamydia muridarum GN=ubiE PE=3 SV=2 Length = 229
Score = 30.0 bits (66), Expect = 4.5 Identities = 24/89 (26%), Positives = 41/89 (46%) Frame = +3
Query: 150 H*VLYMDGAVRKITITQPHIVMPYLPSNRLHQLRMELVIPQIFDGFQGRCYPMIAYQDEG 329 H VL G + + +T+P Y P + LH+L + LV+P + + G Y +Y E Sbjct: 135 HRVLKPKGRLGILELTRP---ATYNPVHLLHKLYLNLVVPSVGRFYSGNSY-AYSYLKES 190
Query: 330 M*SLNLITGLVNVCCILPSHLLPSQQAAF 416 + +L T L V H++ ++ F Sbjct: 191 IRNLPCDTSLERVFHKSGLHIIRKRKLLF 219
>sp|Q250M5|RL16_DESHY 50S ribosomal protein L16 OS=Desulfitobacterium hafniense (strain Y51) GN=rplP PE=3 SV=1 Length = 145
Score = 29.6 bits (65), Expect = 5.9 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Frame = -2
Query: 443 EALRAEQHK---KCSLLRRQEMRGEDA 372 EALR HK KC ++RR+E+ G DA Sbjct: 116 EALRLAMHKLPVKCKIVRREELEGGDA 142
>sp|A2QRG2|END3_ASPNC Actin cytoskeleton-regulatory complex protein end3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=end3 PE=3 SV=1 Length = 404
Score = 29.6 bits (65), Expect = 5.9 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = -2
Query: 443 EALRAEQHKKCSL--LRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDL 270 EAL+ ++K+ L LR R +D ++++ RD+VK + + +A E + DL Sbjct: 334 EALQLLEYKERELRELREGAGRSKDGQNVERLRDDVKTVGEQVEGLKSHLAQRKEVLSDL 393
Query: 269 R 267 R Sbjct: 394 R 394
>sp|Q7MMN0|ZNUC_VIBVY Zinc import ATP-binding protein znuC OS=Vibrio vulnificus (strain YJ016) GN=znuC PE=3 SV=1 Length = 261
Score = 29.6 bits (65), Expect = 6.0 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -1
Query: 171 HP-YIRLNGSNSPNPLALARHDTVFLLSAQVDEHVGDYAPKPCQANPDRCLHQEH 10 HP YI L GS + + LA+ H Q D H D A +P + +C H H Sbjct: 210 HPSYIALFGSAARDSLAIYHH--------QHDHHHHDLAGQPVSGDATQCNHHHH 256
>sp|Q8DFQ4|ZNUC_VIBVU Zinc import ATP-binding protein znuC OS=Vibrio vulnificus GN=znuC PE=3 SV=1 Length = 261
Score = 29.6 bits (65), Expect = 6.0 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -1
Query: 171 HP-YIRLNGSNSPNPLALARHDTVFLLSAQVDEHVGDYAPKPCQANPDRCLHQEH 10 HP YI L GS + + LA+ H Q D H D A +P + +C H H Sbjct: 210 HPSYIALFGSAARDSLAIYHH--------QHDHHHHDLAGQPVSGDATQCNHHHH 256
>sp|Q8BLI4|DSE_MOUSE Dermatan-sulfate epimerase OS=Mus musculus GN=Dse PE=2 SV=1 Length = 958
Score = 29.3 bits (64), Expect = 7.7 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2
Query: 125 ANGLGELEPLSLIYGWGSQKNNNHTAAYCHALLT 226 AN G + S GWG Q +NH C ALLT Sbjct: 182 ANASGYMYETSYRRGWGFQYLHNHQPTNCMALLT 215
>sp|Q9UL01|DSE_HUMAN Dermatan-sulfate epimerase OS=Homo sapiens GN=DSE PE=1 SV=1 Length = 958
Score = 29.3 bits (64), Expect = 7.7 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2
Query: 125 ANGLGELEPLSLIYGWGSQKNNNHTAAYCHALLT 226 AN G + S GWG Q +NH C ALLT Sbjct: 182 ANASGYMYETSYRRGWGFQYLHNHQPTNCMALLT 215
>sp|P0C2H4|DSE_BOVIN Dermatan-sulfate epimerase OS=Bos taurus GN=DSE PE=1 SV=1 Length = 958
Score = 29.3 bits (64), Expect = 7.7 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2
Query: 125 ANGLGELEPLSLIYGWGSQKNNNHTAAYCHALLT 226 AN G + S GWG Q +NH C ALLT Sbjct: 182 ANASGYMYETSYRRGWGFQYLHNHQPTNCMALLT 215
>sp|Q61180|SCNNA_MOUSE Amiloride-sensitive sodium channel subunit alpha OS=Mus musculus GN=Scnn1a PE=1 SV=2 Length = 699
Score = 29.3 bits (64), Expect = 7.8 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = -1
Query: 177 LPHPYIRLNGSNSPNPLALAR--HDTVFLLSAQVDEHVGDYAPKPCQANPDRCLHQEHRC 4 LPHP RL PNP AR +V + QVD + C N C +Q + Sbjct: 211 LPHPLQRLRTPPPPNPARSARSASSSVRDNNPQVDRKDWKIGFQLCNQNKSDCFYQTYSS 270
Query: 3 G 1 G Sbjct: 271 G 271
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QLC3 |
Definition |
tr|A7QLC3|A7QLC3_VITVI Chromosome chr11 scaffold_118, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
76 |
Score (bit) |
67.0 |
E-value |
4.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913490|Adiantum capillus-veneris mRNA, clone: YMU001_000030_G10. (444 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QLC3|A7QLC3_VITVI Chromosome chr11 scaffold_118, whole geno... 67 4e-10 tr|A5B6D5|A5B6D5_VITVI Putative uncharacterized protein OS=Vitis... 67 4e-10 tr|Q9SZW6|Q9SZW6_ARATH Putative uncharacterized protein AT4g3013... 66 1e-09 tr|A7PG46|A7PG46_VITVI Chromosome chr6 scaffold_15, whole genome... 66 1e-09 tr|B8B030|B8B030_ORYSI Putative uncharacterized protein OS=Oryza... 64 3e-09 tr|B4FLB3|B4FLB3_MAIZE Putative uncharacterized protein OS=Zea m... 64 3e-09 tr|A3B1Y5|A3B1Y5_ORYSJ Putative uncharacterized protein OS=Oryza... 64 3e-09 tr|Q9ZVD1|Q9ZVD1_ARATH Putative uncharacterized protein At2g2709... 63 6e-09 tr|Q5XV54|Q5XV54_ARATH Putative uncharacterized protein OS=Arabi... 63 6e-09 tr|O65666|O65666_ARATH Putative uncharacterized protein AT4g3979... 63 6e-09 tr|Q9LY33|Q9LY33_ARATH BZIP protein OS=Arabidopsis thaliana GN=F... 63 8e-09 tr|Q93YU8|Q93YU8_ARATH Putative bZIP protein OS=Arabidopsis thal... 63 8e-09 tr|Q56XC8|Q56XC8_ARATH BZIP like protein OS=Arabidopsis thaliana... 63 8e-09 tr|Q38816|Q38816_ARATH BZIP protein OS=Arabidopsis thaliana PE=2... 63 8e-09 tr|O64472|O64472_ARATH Putative uncharacterized protein At2g1909... 62 1e-08 tr|Q65XR1|Q65XR1_ORYSJ cDNA, clone: J065052C17, full insert sequ... 62 1e-08 tr|Q0DKD0|Q0DKD0_ORYSJ Os05g0172300 protein OS=Oryza sativa subs... 62 1e-08 tr|B8AYL6|B8AYL6_ORYSI Putative uncharacterized protein OS=Oryza... 62 1e-08 tr|A9RKX2|A9RKX2_PHYPA Predicted protein OS=Physcomitrella paten... 62 1e-08 tr|A7PKB0|A7PKB0_VITVI Chromosome chr15 scaffold_19, whole genom... 62 1e-08 tr|A5BR55|A5BR55_VITVI Putative uncharacterized protein OS=Vitis... 62 1e-08 tr|A3B0G0|A3B0G0_ORYSJ Putative uncharacterized protein OS=Oryza... 62 1e-08 tr|A7R5F9|A7R5F9_VITVI Chromosome undetermined scaffold_957, who... 62 2e-08 tr|B8A2W2|B8A2W2_MAIZE Putative uncharacterized protein OS=Zea m... 61 2e-08 tr|A9S735|A9S735_PHYPA Predicted protein OS=Physcomitrella paten... 61 2e-08 tr|B2Y4P0|B2Y4P0_ARAHA Putative uncharacterized protein OS=Arabi... 61 3e-08 tr|Q0GPH0|Q0GPH0_SOYBN BZIP transcription factor bZIP80 (Fragmen... 60 4e-08 tr|B7ZXF8|B7ZXF8_MAIZE Putative uncharacterized protein OS=Zea m... 60 4e-08 tr|Q56W45|Q56W45_ARATH BZIP-like protein OS=Arabidopsis thaliana... 60 5e-08 tr|A7P8E4|A7P8E4_VITVI Chromosome chr3 scaffold_8, whole genome ... 60 7e-08
>tr|A7QLC3|A7QLC3_VITVI Chromosome chr11 scaffold_118, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001534001 PE=4 SV=1 Length = 697
Score = 67.0 bits (162), Expect = 4e-10 Identities = 31/76 (40%), Positives = 49/76 (64%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R +KC+ LR Q++RG+D + +DKTR ++ LH+ I V H + + + IE LRD Sbjct: 405 EKIRIAYERKCNRLRNQDVRGDDPSSVDKTRAGIRDLHTQIKVSIHSVEAVSKRIEALRD 464
Query: 263 DELHPQLVQPIAG*VR 216 +EL PQL++ + G R Sbjct: 465 EELQPQLLELVQGLAR 480
>tr|A5B6D5|A5B6D5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004545 PE=4 SV=1 Length = 769
Score = 67.0 bits (162), Expect = 4e-10 Identities = 31/76 (40%), Positives = 49/76 (64%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R +KC+ LR Q++RG+D + +DKTR ++ LH+ I V H + + + IE LRD Sbjct: 459 EKIRIAYERKCNRLRNQDVRGDDPSSVDKTRAGIRDLHTQIKVSIHSVEAVSKRIEALRD 518
Query: 263 DELHPQLVQPIAG*VR 216 +EL PQL++ + G R Sbjct: 519 EELQPQLLELVQGLAR 534
>tr|Q9SZW6|Q9SZW6_ARATH Putative uncharacterized protein AT4g30130 OS=Arabidopsis thaliana GN=F6G3.160 PE=2 SV=1 Length = 725
Score = 65.9 bits (159), Expect = 1e-09 Identities = 32/73 (43%), Positives = 47/73 (64%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 + +R KKC +LR Q+++G D++ +DKTR ++ LH+ I V H I S E IE LRD Sbjct: 421 DRIRIAYEKKCLVLRNQDVKGADSSAVDKTRATIRDLHTQIKVSIHSIESISERIETLRD 480
Query: 263 DELHPQLVQPIAG 225 EL PQL++ + G Sbjct: 481 QELLPQLLELVQG 493
>tr|A7PG46|A7PG46_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017371001 PE=4 SV=1 Length = 765
Score = 65.9 bits (159), Expect = 1e-09 Identities = 36/73 (49%), Positives = 45/73 (61%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R + KC +LR+ E +GE IDKTR VK LHS I V H I S + IE+LRD Sbjct: 468 EMIRRDYDMKCKILRQLESKGESTNKIDKTRAVVKDLHSRIRVAIHRINSISKRIEELRD 527
Query: 263 DELHPQLVQPIAG 225 EL PQL + I+G Sbjct: 528 TELEPQLEELISG 540
>tr|B8B030|B8B030_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19204 PE=4 SV=1 Length = 515
Score = 64.3 bits (155), Expect = 3e-09 Identities = 36/76 (47%), Positives = 48/76 (63%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R +KC+LLRRQ RG +A IDKTR VK LHS + V + + + IE +RD Sbjct: 215 EHVRKTYDEKCNLLRRQFARGLNAQLIDKTRAVVKDLHSRVSVAIQAVDAISKRIEKIRD 274
Query: 263 DELHPQLVQPIAG*VR 216 +EL PQLV+ I G +R Sbjct: 275 EELQPQLVELIQGLIR 290
>tr|B4FLB3|B4FLB3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 348
Score = 64.3 bits (155), Expect = 3e-09 Identities = 36/76 (47%), Positives = 48/76 (63%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R +KC+LLRRQ RG +A IDKTR VK LHS + V + + + IE +RD Sbjct: 49 ENVRKAYDEKCNLLRRQFARGLNAQVIDKTRAVVKDLHSRVSVVIQAVDAISKRIEKIRD 108
Query: 263 DELHPQLVQPIAG*VR 216 +EL PQLV+ I G +R Sbjct: 109 EELQPQLVELIQGLIR 124
>tr|A3B1Y5|A3B1Y5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017057 PE=4 SV=1 Length = 722
Score = 64.3 bits (155), Expect = 3e-09 Identities = 36/76 (47%), Positives = 48/76 (63%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R +KC+LLRRQ RG +A IDKTR VK LHS + V + + + IE +RD Sbjct: 422 EHVRKTYDEKCNLLRRQFARGLNAQLIDKTRAVVKDLHSRVSVAIQAVDAISKRIEKIRD 481
Query: 263 DELHPQLVQPIAG*VR 216 +EL PQLV+ I G +R Sbjct: 482 EELQPQLVELIQGLIR 497
>tr|Q9ZVD1|Q9ZVD1_ARATH Putative uncharacterized protein At2g27090 (At2g27090) OS=Arabidopsis thaliana GN=At2g27090 PE=1 SV=1 Length = 743
Score = 63.2 bits (152), Expect = 6e-09 Identities = 35/73 (47%), Positives = 44/73 (60%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 + +R E +KC +LR E G+ + IDKTR VK LHS I V H I S IE+LRD Sbjct: 448 QTVRREYDEKCRILRELESEGKGSQRIDKTRAVVKDLHSRIRVAIHRIDSISRRIEELRD 507
Query: 263 DELHPQLVQPIAG 225 +EL PQL + I G Sbjct: 508 NELQPQLEELIEG 520
>tr|Q5XV54|Q5XV54_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana GN=At4g39790 PE=2 SV=1 Length = 657
Score = 63.2 bits (152), Expect = 6e-09 Identities = 33/76 (43%), Positives = 44/76 (57%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R E +KC LR Q + A +DKTR K LHS I V + S + IE +RD Sbjct: 395 EMIRKEYDRKCEQLRNQFAKDHSAKSMDKTRAAAKDLHSRIRVAIQSVESISKRIERIRD 454
Query: 263 DELHPQLVQPIAG*VR 216 DELHPQL++ + G +R Sbjct: 455 DELHPQLLEFLQGLIR 470
>tr|O65666|O65666_ARATH Putative uncharacterized protein AT4g39790 OS=Arabidopsis thaliana GN=AT4g39790 PE=2 SV=1 Length = 631
Score = 63.2 bits (152), Expect = 6e-09 Identities = 33/76 (43%), Positives = 44/76 (57%) Frame = -2
Query: 443 EALRAEQHKKCSLLRRQEMRGEDAADIDKTRDEVKRLHSLILVCNHGIASTLEAIEDLRD 264 E +R E +KC LR Q + A +DKTR K LHS I V + S + IE +RD Sbjct: 369 EMIRKEYDRKCEQLRNQFAKDHSAKSMDKTRAAAKDLHSRIRVAIQSVESISKRIERIRD 428
Query: 263 DELHPQLVQPIAG*VR 216 DELHPQL++ + G +R Sbjct: 429 DELHPQLLEFLQGLIR 444
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