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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913491
Clone id YMU001_000030_G11
Library
Length 352
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTAGGAGGGACAATGCTCAATTCGAGATGTCGAGGCTGCAGAAATTATGTGCTGAGGAGC
AGGTAGAGGATCTTATTCAAGAATTGGCAGCAGTGTATGACAGGGGCATGATGCCAAGTC
CAGGAAATTTACTTAAGATAAGCATATTCAGGGTGGTTTAACCGATTGCACGAAGGGTGT
ATTTGATTTGGACTTTGAGCCCGGAAAACGTCAGATAAGCTCTTCATCGAGATTGATGGG
GTTATTGTAGCATATGAGGAGGAGGATTGAGCGTGCCACTTGAGGATGCTGCTTGAGGAT
AATTGAGTGTACATGCTAATTGAGGGAGGATGATATGGATGTACAGAGGATG
■■Homology search results ■■ -
sp_hit_id Q06752
Definition sp|Q06752|SYC_BACSU Cysteinyl-tRNA synthetase OS=Bacillus subtilis
Align length 47
Score (bit) 35.0
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913491|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_G11.
         (352 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06752|SYC_BACSU Cysteinyl-tRNA synthetase OS=Bacillus subtil...    35   0.11 
sp|A4IJG8|SYC_GEOTN Cysteinyl-tRNA synthetase OS=Geobacillus the...    34   0.20 
sp|Q5L429|SYC_GEOKA Cysteinyl-tRNA synthetase OS=Geobacillus kau...    34   0.20 
sp|Q6HPS8|SYC_BACHK Cysteinyl-tRNA synthetase OS=Bacillus thurin...    34   0.20 
sp|Q63HB0|SYC_BACCZ Cysteinyl-tRNA synthetase OS=Bacillus cereus...    34   0.20 
sp|Q81J59|SYC_BACCR Cysteinyl-tRNA synthetase OS=Bacillus cereus...    34   0.20 
sp|A7GK01|SYC_BACCN Cysteinyl-tRNA synthetase OS=Bacillus cereus...    34   0.20 
sp|Q73FB7|SYC_BACC1 Cysteinyl-tRNA synthetase OS=Bacillus cereus...    34   0.20 
sp|Q81VV1|SYC_BACAN Cysteinyl-tRNA synthetase OS=Bacillus anthra...    34   0.20 
sp|A0R8G1|SYC_BACAH Cysteinyl-tRNA synthetase OS=Bacillus thurin...    34   0.20 
sp|A7Z0L6|SYC_BACA2 Cysteinyl-tRNA synthetase OS=Bacillus amylol...    34   0.20 
sp|Q65PC8|SYC_BACLD Cysteinyl-tRNA synthetase OS=Bacillus lichen...    33   0.57 
sp|Q9I2U7|SYC_PSEAE Cysteinyl-tRNA synthetase OS=Pseudomonas aer...    31   1.7  
sp|Q02KT6|SYC_PSEAB Cysteinyl-tRNA synthetase OS=Pseudomonas aer...    31   1.7  
sp|A6V727|SYC_PSEA7 Cysteinyl-tRNA synthetase OS=Pseudomonas aer...    31   1.7  
sp|A8F962|SYC_BACP2 Cysteinyl-tRNA synthetase OS=Bacillus pumilu...    31   1.7  
sp|Q8BKA3|K1853_MOUSE Uncharacterized protein KIAA1853 homolog O...    31   1.7  
sp|A4XVG1|SYC_PSEMY Cysteinyl-tRNA synthetase OS=Pseudomonas men...    30   2.8  
sp|Q5WLT3|SYC_BACSK Cysteinyl-tRNA synthetase OS=Bacillus clausi...    30   2.8  
sp|Q8TV06|IF2P_METKA Probable translation initiation factor IF-2...    30   3.7  
sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomy...    30   3.7  
sp|Q49V39|SYC_STAS1 Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q4L3I9|SYC_STAHJ Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q8CTU1|SYC_STAES Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q5HRM3|SYC_STAEQ Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q8NXY7|SYC_STAAW Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|A8YZM7|SYC_STAAT Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q6GBV8|SYC_STAAS Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q99W73|SYC_STAAN Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  
sp|Q932G0|SYC_STAAM Cysteinyl-tRNA synthetase OS=Staphylococcus ...    30   4.8  

>sp|Q06752|SYC_BACSU Cysteinyl-tRNA synthetase OS=Bacillus subtilis
           GN=cysS PE=1 SV=1
          Length = 466

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI*RFPGSKSKSNTPF 172
           VH II +  PQ+ R  +L + Y +PIN  EEL+     + S+  T +
Sbjct: 277 VHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAY 323


>sp|A4IJG8|SYC_GEOTN Cysteinyl-tRNA synthetase OS=Geobacillus
           thermodenitrificans (strain NG80-2) GN=cysS PE=3 SV=1
          Length = 467

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQV R  +L + Y +PIN  EEL+
Sbjct: 278 VHDIIRQIDPQVLRFFMLSVHYRHPINYSEELL 310


>sp|Q5L429|SYC_GEOKA Cysteinyl-tRNA synthetase OS=Geobacillus
           kaustophilus GN=cysS PE=3 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQV R  +L + Y +PIN  EEL+
Sbjct: 278 VHDIIREIDPQVLRFFMLSVHYRHPINYSEELL 310


>sp|Q6HPS8|SYC_BACHK Cysteinyl-tRNA synthetase OS=Bacillus
           thuringiensis subsp. konkukian GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|Q63HB0|SYC_BACCZ Cysteinyl-tRNA synthetase OS=Bacillus cereus
           (strain ZK / E33L) GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|Q81J59|SYC_BACCR Cysteinyl-tRNA synthetase OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|A7GK01|SYC_BACCN Cysteinyl-tRNA synthetase OS=Bacillus cereus
           subsp. cytotoxis (strain NVH 391-98) GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|Q73FB7|SYC_BACC1 Cysteinyl-tRNA synthetase OS=Bacillus cereus
           (strain ATCC 10987) GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|Q81VV1|SYC_BACAN Cysteinyl-tRNA synthetase OS=Bacillus anthracis
           GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>sp|A0R8G1|SYC_BACAH Cysteinyl-tRNA synthetase OS=Bacillus
           thuringiensis (strain Al Hakam) GN=cysS PE=3 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309
tr_hit_id Q2B1I8
Definition tr|Q2B1I8|Q2B1I8_9BACI Cysteinyl-tRNA synthetase OS=Bacillus sp. NRRL B-14911
Align length 33
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913491|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_G11.
         (352 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2B1I8|Q2B1I8_9BACI Cysteinyl-tRNA synthetase OS=Bacillus sp....    36   1.1  
tr|A6CU32|A6CU32_9BACI Cysteinyl-tRNA synthetase OS=Bacillus sp....    35   2.4  
tr|Q4MI92|Q4MI92_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|Q3EUS2|Q3EUS2_BACTI Cysteinyl-tRNA synthetase OS=Bacillus thu...    34   3.1  
tr|B7YDR2|B7YDR2_9BACI Cysteinyl-tRNA synthetase OS=Geobacillus ...    34   3.1  
tr|B7JK97|B7JK97_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B7ISZ9|B7ISZ9_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B7HQS4|B7HQS4_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B7HJ28|B7HJ28_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B5VD02|B5VD02_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B5UVY4|B5UVY4_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B4BT22|B4BT22_9BACI Cysteinyl-tRNA synthetase OS=Geobacillus ...    34   3.1  
tr|B3ZX14|B3ZX14_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B3ZF53|B3ZF53_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cer...    34   3.1  
tr|B3JBN0|B3JBN0_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B1UXL1|B1UXL1_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B1GQA4|B1GQA4_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B1F1I4|B1F1I4_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B0QKR6|B0QKR6_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B0QA39|B0QA39_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|B0AY54|B0AY54_BACAN Cysteinyl-tRNA synthetase OS=Bacillus ant...    34   3.1  
tr|A9VNA2|A9VNA2_BACWK Cysteinyl-tRNA synthetase OS=Bacillus wei...    33   7.0  
tr|A5AWW0|A5AWW0_VITVI Putative uncharacterized protein (Chromos...    33   9.2  

>tr|Q2B1I8|Q2B1I8_9BACI Cysteinyl-tRNA synthetase OS=Bacillus sp.
           NRRL B-14911 GN=cysS PE=4 SV=1
          Length = 465

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II K  PQV R  +L + Y +PIN  +EL+
Sbjct: 277 VHDIIKKHDPQVLRFFMLSVHYRHPINYSDELL 309


>tr|A6CU32|A6CU32_9BACI Cysteinyl-tRNA synthetase OS=Bacillus sp.
           SG-1 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +Q PQV R  +L + Y +PIN + EL+
Sbjct: 277 VHDIIKEQDPQVLRFFMLSVHYRHPINYNLELL 309


>tr|Q4MI92|Q4MI92_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           G9241 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|Q3EUS2|Q3EUS2_BACTI Cysteinyl-tRNA synthetase OS=Bacillus
           thuringiensis serovar israelensis ATCC 35646
           GN=RBTH_06012 PE=4 SV=1
          Length = 339

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|B7YDR2|B7YDR2_9BACI Cysteinyl-tRNA synthetase OS=Geobacillus sp.
           Y412MC61 GN=GYMC61DRAFT_2888 PE=4 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQV R  +L + Y +PIN  EEL+
Sbjct: 278 VHDIIREIDPQVLRFFMLSVHYRHPINYSEELL 310


>tr|B7JK97|B7JK97_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           AH820 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|B7ISZ9|B7ISZ9_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           G9842 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|B7HQS4|B7HQS4_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           AH187 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|B7HJ28|B7HJ28_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           B4264 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309


>tr|B5VD02|B5VD02_BACCE Cysteinyl-tRNA synthetase OS=Bacillus cereus
           H3081.97 GN=cysS PE=4 SV=1
          Length = 465

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 312 VHSIILKQHPQVARSILLLICYNNPINLDEELI 214
           VH II +  PQ+ R  +L + Y +PIN  EEL+
Sbjct: 277 VHDIIKQYDPQLIRFFMLSVHYRHPINFSEELL 309