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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913497
Clone id YMU001_000030_H05
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAATTCAATAGACACCGGCTCCAAGTACCGATGCACTAGACGACACAAATCAAGCACTT
GTACAAAGACGACAGTCACATCACATTCAGATCATACCACATAGAATCCATTTAGATCTA
GGACCATGATTCTTATCAACGTATTTAGCAATGGCATCTAGATCCGCACTGGACCTCAGT
GATGTCGGATTAACCAATTCTATATGGTGATCATGTTCATAGATTTCTTGAGATCGAAAT
GTTGCGGTTGTTTCGTCAATCATTCCATCTACACTCAAACACAATCATGTGCGAGTAATC
ATTTCCGAGAATTCCAATCCATCAATCAAACATTGAGTTGATACTGAACAGAGTGTCTTA
ATCATTCAGTTCTAGCTGTGTGGCCATCTCATCCATGGGGAATGACAATTCCATTCAATC
ATTCATCATGATTCAAAATTCATGATCCTTATCTCGAATCGTGATCGGGTACATTTTGGA
GCTATCATTGCTCCCAGTTCACCATCATCAT
■■Homology search results ■■ -
sp_hit_id A1SEK2
Definition sp|A1SEK2|RPOC_NOCSJ DNA-directed RNA polymerase subunit beta' OS=Nocardioides sp. (strain BAA-499 / JS614)
Align length 30
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913497|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_H05.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1SEK2|RPOC_NOCSJ DNA-directed RNA polymerase subunit beta' O...    31   2.9  
sp|Q08687|TMA16_YEAST Translation machinery-associated protein 1...    31   3.9  
sp|Q8NT25|RPOC_CORGL DNA-directed RNA polymerase subunit beta' O...    31   3.9  
sp|A4QBG3|RPOC_CORGB DNA-directed RNA polymerase subunit beta' O...    31   3.9  
sp|Q8FS96|RPOC_COREF DNA-directed RNA polymerase subunit beta' O...    31   3.9  

>sp|A1SEK2|RPOC_NOCSJ DNA-directed RNA polymerase subunit beta'
            OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpoC PE=3
            SV=1
          Length = 1290

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263  MIDETTATFRSQEIYEHDHHIELVNPTSLR 174
            ++DE  A +RSQ +  HD HIE++    LR
Sbjct: 1109 LVDEVQAVYRSQGVSIHDKHIEIIVRQMLR 1138


>sp|Q08687|TMA16_YEAST Translation machinery-associated protein 16
           OS=Saccharomyces cerevisiae GN=TMA16 PE=1 SV=2
          Length = 178

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 242 TFRSQEIYEHDHHIELVNPTSLRSSADLDAIAKYVDKNHGPRSKWIL 102
           TF+ Q I++H H  E +     R   +LD + K    N  P ++ +L
Sbjct: 72  TFKGQPIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQVL 118


>sp|Q8NT25|RPOC_CORGL DNA-directed RNA polymerase subunit beta'
            OS=Corynebacterium glutamicum GN=rpoC PE=3 SV=1
          Length = 1333

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 263  MIDETTATFRSQEIYEHDHHIELVNPTSLRSSADLDA 153
            +IDE  A +R+Q +  HD HIE++    LR    +++
Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIES 1191


>sp|A4QBG3|RPOC_CORGB DNA-directed RNA polymerase subunit beta'
            OS=Corynebacterium glutamicum (strain R) GN=rpoC PE=3
            SV=1
          Length = 1333

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 263  MIDETTATFRSQEIYEHDHHIELVNPTSLRSSADLDA 153
            +IDE  A +R+Q +  HD HIE++    LR    +++
Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIES 1191


>sp|Q8FS96|RPOC_COREF DNA-directed RNA polymerase subunit beta'
            OS=Corynebacterium efficiens GN=rpoC PE=3 SV=1
          Length = 1333

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 263  MIDETTATFRSQEIYEHDHHIELVNPTSLRSSADLDA 153
            +IDE  A +R+Q +  HD HIE++    LR    +++
Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIES 1191
tr_hit_id Q3S659
Definition tr|Q3S659|Q3S659_CORAM DNA-directed RNA polymerase OS=Corynebacterium ammoniagenes
Align length 37
Score (bit) 33.5
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913497|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_H05.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3S659|Q3S659_CORAM DNA-directed RNA polymerase OS=Corynebact...    33   6.1  

>tr|Q3S659|Q3S659_CORAM DNA-directed RNA polymerase OS=Corynebacterium
            ammoniagenes GN=rpoC PE=3 SV=1
          Length = 1337

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 263  MIDETTATFRSQEIYEHDHHIELVNPTSLRSSADLDA 153
            +IDE  A +R+Q +  HD HIE++    LR    +DA
Sbjct: 1157 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIDA 1193