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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913502
Clone id YMU001_000030_H10
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000030_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGCCAGAAATGAAGCACGGTGCTTGGTATGCGAAGTTGGTGGCGGGGTCAGCGCTTTGC
GGGGCTGCTATGGAGCTTTTCATGATAAAAACAGGCTTCTGTGTATTACGAGTCTTGGAT
TGAGCAACATAACTTGGGAGGAGATAGTCCCAATGGTATTGGTTAGAGGAGCGGTTCAAT
GTGGGGAAGAAGCCCGGCTTCAAAGCCTTTGCGGGTTCTTCCAACAACAACAACAAGAAG
CAGAAGGGTAAAAAGAAGAGCAACAACGACAATAAGAAGATGGATGTTGAAGACACATTA
GCCGTACAAACTATGCCCTAAACCAAGTAAAGCAGCATGAGTGCTTTATACTCTAATAAT
AGCATCGTGGCTATTGAGTCTGTCCACTAGTCATGGGCCACTAGTCCAAAGAGTTGATGA
GGGAAAAGTGGGCCACATGTACTATCCATTATGGTCCTCCATAAAGATTGTCGAGGTGAG
CCAAGCAGTGCGGTTGGGTTGCATAGTGCG
■■Homology search results ■■ -
sp_hit_id P41413
Definition sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5 (Fragment) OS=Rattus norvegicus
Align length 106
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913502|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_H10.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type ...    32   1.7  
sp|A4JCG7|UBIG_BURVG 3-demethylubiquinone-9 3-methyltransferase ...    30   6.6  
sp|Q8VBW5|BBX_MOUSE HMG box transcription factor BBX OS=Mus musc...    30   6.6  

>sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5
            (Fragment) OS=Rattus norvegicus GN=Pcsk5 PE=2 SV=2
          Length = 1877

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = -3

Query: 298  MCLQHPSSYC-RCCSSFYP--SASCCCCWKNPQRL*SRASSPH*TAPLTNTIGTISSQVM 128
            + LQ   S C RCC++ +P  S  CC C  +       AS        T T   ++S  M
Sbjct: 1718 LLLQMDDSRCLRCCNASHPHRSQDCCDCQSSTDECILPASDDTVFHEHTKTALLVTSGAM 1777

Query: 127  LLNPRLVIHRSLFLS*KAP*QP-----RKALTPPPTSHTKHRASFL 5
            LL   L++  ++ +  K+  QP      + L  P  S++ +R+S+L
Sbjct: 1778 LL---LLLGAAVVVWRKSRSQPVAKGRYEKLAEPTVSYSSYRSSYL 1820


>sp|A4JCG7|UBIG_BURVG 3-demethylubiquinone-9 3-methyltransferase
           OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
           GN=ubiG PE=3 SV=1
          Length = 232

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -2

Query: 212 AKALKPG---FFPTLNRSSNQYHWDYLLPSYVAQSKTRNTQKPV-FIMKSSIA 66
           AK +KPG   FF TLNR+   Y +  +   Y+AQ   + T     FI  S +A
Sbjct: 137 AKLVKPGGWVFFSTLNRNLKSYLFAVIGAEYIAQMLPKGTHDYARFIRPSELA 189


>sp|Q8VBW5|BBX_MOUSE HMG box transcription factor BBX OS=Mus
           musculus GN=Bbx PE=1 SV=2
          Length = 907

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -2

Query: 170 SSNQYHWDYLLPSYVAQSKTRNTQKPVFIMKSSIAAPQSADPAT 39
           S  Q+  D + P+    S+ ++T +P F +K++++ P + +P T
Sbjct: 738 SHKQFFLDAIHPTEAIFSEDKSTTEPAFKVKNALSIPNTPEPTT 781
tr_hit_id A9NN52
Definition tr|A9NN52|A9NN52_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 34
Score (bit) 44.3
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913502|Adiantum capillus-veneris mRNA, clone:
YMU001_000030_H10.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NN52|A9NN52_PICSI Putative uncharacterized protein OS=Picea...    44   0.004
tr|B8BNU2|B8BNU2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.018
tr|Q9LZP5|Q9LZP5_ARATH Putative uncharacterized protein T12C14_1...    40   0.087
tr|B6U5F0|B6U5F0_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.087
tr|B6TGU6|B6TGU6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.087
tr|B8BIM5|B8BIM5_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.11 
tr|Q1SKR9|Q1SKR9_MEDTR Putative uncharacterized protein OS=Medic...    39   0.19 
tr|B0D6I8|B0D6I8_LACBS Predicted protein OS=Laccaria bicolor (st...    36   0.94 
tr|B8BNU1|B8BNU1_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.6  
tr|Q8C9P7|Q8C9P7_MOUSE Putative uncharacterized protein (Fragmen...    34   4.7  
tr|Q9W0V0|Q9W0V0_DROME CG6845, isoform C OS=Drosophila melanogas...    33   6.1  
tr|Q961F6|Q961F6_DROME CG6845, isoform B OS=Drosophila melanogas...    33   6.1  
tr|Q6NL49|Q6NL49_DROME LD03460p (Fragment) OS=Drosophila melanog...    33   6.1  
tr|B7Z0G8|B7Z0G8_DROME CG6845, isoform D OS=Drosophila melanogas...    33   6.1  

>tr|A9NN52|A9NN52_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 34

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +1

Query: 10  MKHGAWYAKLVAGSALCGAAMELFMIKTGFCVLR 111
           MK   WY KL  G A  GAAME FMI+TGFC+ +
Sbjct: 1   MKFLDWYIKLAVGFATIGAAMEYFMIRTGFCMTK 34


>tr|B8BNU2|B8BNU2_ORYSI Putative uncharacterized protein OS=Oryza
          sativa subsp. indica GN=OsI_37173 PE=4 SV=1
          Length = 69

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +1

Query: 10 MKHGAWYAKLVAGSALCGAAMELFMIKTGF 99
          M+   WY K+ AG A  GAAMELFMI TGF
Sbjct: 1  MRFLGWYLKIAAGGAAIGAAMELFMIHTGF 30


>tr|Q9LZP5|Q9LZP5_ARATH Putative uncharacterized protein
          T12C14_150 (Putative uncharacterized protein At3g62450)
          (Putative uncharacterized protein At3g62450/T12C14_150)
          OS=Arabidopsis thaliana GN=T12C14_150 PE=2 SV=1
          Length = 74

 Score = 39.7 bits (91), Expect = 0.087
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 25 WYAKLVAGSALCGAAMELFMIKTGF 99
          WY K+  GSA+ G  ME FMIKTGF
Sbjct: 9  WYLKIAIGSAIIGGGMEFFMIKTGF 33


>tr|B6U5F0|B6U5F0_MAIZE Putative uncharacterized protein OS=Zea
          mays PE=4 SV=1
          Length = 71

 Score = 39.7 bits (91), Expect = 0.087
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 10 MKHGAWYAKLVAGSALCGAAMELFMIKTGF 99
          M+   WY K+ A  A  GAAMELFMI TGF
Sbjct: 1  MRFAGWYLKIAAVGASIGAAMELFMIHTGF 30


>tr|B6TGU6|B6TGU6_MAIZE Putative uncharacterized protein OS=Zea
          mays PE=4 SV=1
          Length = 70

 Score = 39.7 bits (91), Expect = 0.087
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 10 MKHGAWYAKLVAGSALCGAAMELFMIKTGF 99
          M+   WY K+ A  A  GAAMELFMI TGF
Sbjct: 1  MRFAGWYLKIAAVGASIGAAMELFMIHTGF 30


>tr|B8BIM5|B8BIM5_ORYSI Putative uncharacterized protein OS=Oryza
          sativa subsp. indica GN=OsI_34801 PE=4 SV=1
          Length = 68

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +1

Query: 10 MKHGAWYAKLVAGSALCGAAMELFMIKTGF 99
          M+   WY K+  G A  GA+MELFMI TGF
Sbjct: 1  MRFLGWYLKIAVGGAAIGASMELFMIHTGF 30


>tr|Q1SKR9|Q1SKR9_MEDTR Putative uncharacterized protein
          OS=Medicago truncatula GN=MtrDRAFT_AC140551g61v2 PE=4
          SV=2
          Length = 70

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 25 WYAKLVAGSALCGAAMELFMIKTGF 99
          WY K+   SAL GA+ME FM+KTGF
Sbjct: 5  WYFKIGVASALVGASMEFFMVKTGF 29


>tr|B0D6I8|B0D6I8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_318344 PE=4 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.94
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 301 LMCLQHPSSYCRCCSSFYPSASCCCCW 221
           L+C  + ++ C CC SF+PS+S CC W
Sbjct: 3   LLCNGNIAATCFCCLSFFPSSSNCCPW 29


>tr|B8BNU1|B8BNU1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37172 PE=4 SV=1
          Length = 657

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -2

Query: 113 TRNTQKPVFIMKSSIAAPQSADPA 42
           +R+ QKPV+IM SS+AAP +A PA
Sbjct: 149 SRDAQKPVWIMNSSMAAPMAAPPA 172


>tr|Q8C9P7|Q8C9P7_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Bbx PE=2 SV=1
          Length = 217

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -2

Query: 215 PAKALKPGFFPTLNRSSNQYHWDYLLPSYVAQSKTRNTQKPVFIMKSSIAAPQSADPAT 39
           P   LKP     +N  ++ +  D + P+    S+ ++T +P F +K++++ P + +P T
Sbjct: 33  PQNRLKPAKEVGINGHTSNFSCDAIHPTEAIFSEDKSTTEPAFKVKNALSIPNTPEPTT 91