BP913509
Clone id YMU001_000031_A06
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTACTCCCGGAGTTATGGTCTATGGAGCACATAGAGTAGGGAAGCAAGGAGCTCCTCGCT
CGGGAGAACGGCCAATTGTATGCACCATGCCGGATGAGACCAAGCGAAAGATTATCCTTG
ATAATAGTTGGATCTATTTCAGGAATACAAAATGTTTTGTATGTGAAGATCGCACTATTA
AGCAACAAAATATGCGTCGCAAGGCATATGAGGAAAAGAATAATAAAAACAAGGAAATCT
CTCATGAAGAAAATGTGCCCAAGGAGGAGGCAAGTCTCTCAAGCAAATAGGGATGCGTGA
CCTATGAGACCGAGTTACAATTGAAAATATGCTTTTGGAATTATAATGGATACCCATGGA
ATGCCGGGGTTGGCATTGATGAACTAACAAGCAAAGCCGATGTTGTACTTCTTGTTGAAA
CTTGGGAGCATGATACACAAAGGATTAACGGC
■■Homology search results ■■ -
sp_hit_id A0LIJ6
Definition sp|A0LIJ6|RS3_SYNFM 30S ribosomal protein S3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Align length 36
Score (bit) 32.0
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913509|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_A06.
(452 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A0LIJ6|RS3_SYNFM 30S ribosomal protein S3 OS=Syntrophobacter ... 32 1.3
sp|Q06J32|RR12_BIGNA 30S ribosomal protein S12, chloroplastic OS... 30 3.7
sp|Q6IRT3|CL048_MOUSE UPF0419 protein C12orf48 homolog OS=Mus mu... 30 4.8
sp|Q1MPT1|RS12_LAWIP 30S ribosomal protein S12 OS=Lawsonia intra... 30 6.3
sp|Q01713|KLF9_RAT Krueppel-like factor 9 OS=Rattus norvegicus G... 29 8.2
sp|P79288|KLF9_PIG Krueppel-like factor 9 OS=Sus scrofa GN=KLF9 ... 29 8.2
sp|O35739|KLF9_MOUSE Krueppel-like factor 9 OS=Mus musculus GN=K... 29 8.2
sp|Q13886|KLF9_HUMAN Krueppel-like factor 9 OS=Homo sapiens GN=K... 29 8.2

>sp|A0LIJ6|RS3_SYNFM 30S ribosomal protein S3 OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rpsC PE=3 SV=2
Length = 208

Score = 32.0 bits (71), Expect = 1.3
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1

Query: 143 PEIDPTIIKDNLSLGLIRHGAYNWPFSRARSSLLPY 36
PE+D T++ +N+SL L+R A+ RA S+ L +
Sbjct: 108 PELDATLVGENISLQLVRRVAFRRAMKRAVSAALKF 143


>sp|Q06J32|RR12_BIGNA 30S ribosomal protein S12, chloroplastic
OS=Bigelowiella natans GN=rps12 PE=3 SV=1
Length = 121

Score = 30.4 bits (67), Expect = 3.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1

Query: 202 RHMRKRIIKTRKSLMKKMCPRRRQVSQANRDA*PMRPS 315
R RK+I K KS KMCP+RR V P +P+
Sbjct: 9 RSSRKKITKKTKSPALKMCPQRRGVCSRVYTTTPKKPN 46


>sp|Q6IRT3|CL048_MOUSE UPF0419 protein C12orf48 homolog OS=Mus
musculus PE=2 SV=3
Length = 573

Score = 30.0 bits (66), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3

Query: 312 RSHRSRIPICLRDLPPPWAHFLHER 238
+ HR +CL D+ W +FLHE+
Sbjct: 50 KQHRGEFTVCLSDVLLTWKYFLHEK 74


>sp|Q1MPT1|RS12_LAWIP 30S ribosomal protein S12 OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=rpsL PE=3 SV=1
Length = 123

Score = 29.6 bits (65), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1

Query: 202 RHMRKRIIKTRKSLMKKMCPRRRQVSQANRDA*PMRPS 315
RH RK+++K +K+ + CP+RR V P +P+
Sbjct: 9 RHERKKVVKRKKTPALQGCPQRRGVCTRVYTTTPKKPN 46


>sp|Q01713|KLF9_RAT Krueppel-like factor 9 OS=Rattus norvegicus
GN=Klf9 PE=2 SV=1
Length = 244

Score = 29.3 bits (64), Expect = 8.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3

Query: 60 SGERPIVCTMPDETKRKIILDNSWIYFR------NTKCFVCEDRTIKQQNMRRKA 206
+GERP CT PD K+ D ++R +C +CE R ++ ++ + A
Sbjct: 168 TGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKRFMRSDHLTKHA 222


>sp|P79288|KLF9_PIG Krueppel-like factor 9 OS=Sus scrofa GN=KLF9
PE=2 SV=3
Length = 244

Score = 29.3 bits (64), Expect = 8.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3

Query: 60 SGERPIVCTMPDETKRKIILDNSWIYFR------NTKCFVCEDRTIKQQNMRRKA 206
+GERP CT PD K+ D ++R +C +CE R ++ ++ + A
Sbjct: 168 TGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKRFMRSDHLTKHA 222


>sp|O35739|KLF9_MOUSE Krueppel-like factor 9 OS=Mus musculus GN=Klf9
PE=2 SV=1
Length = 244

Score = 29.3 bits (64), Expect = 8.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3

Query: 60 SGERPIVCTMPDETKRKIILDNSWIYFR------NTKCFVCEDRTIKQQNMRRKA 206
+GERP CT PD K+ D ++R +C +CE R ++ ++ + A
Sbjct: 168 TGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKRFMRSDHLTKHA 222


>sp|Q13886|KLF9_HUMAN Krueppel-like factor 9 OS=Homo sapiens GN=KLF9
PE=2 SV=1
Length = 244

Score = 29.3 bits (64), Expect = 8.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3

Query: 60 SGERPIVCTMPDETKRKIILDNSWIYFR------NTKCFVCEDRTIKQQNMRRKA 206
+GERP CT PD K+ D ++R +C +CE R ++ ++ + A
Sbjct: 168 TGERPFPCTWPDCLKKFSRSDELTRHYRTHTGEKQFRCPLCEKRFMRSDHLTKHA 222


tr_hit_id B8LPV1
Definition tr|B8LPV1|B8LPV1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 39
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913509|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_A06.
(452 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LPV1|B8LPV1_PICSI Putative uncharacterized protein OS=Picea... 33 9.3
tr|A9NUJ2|A9NUJ2_PICSI Putative uncharacterized protein OS=Picea... 33 9.3

>tr|B8LPV1|B8LPV1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 443

Score = 32.7 bits (73), Expect = 9.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3

Query: 318 VTRSHRSRIPICLRDLPPPWAHFLHERFPCFYYSFPHMP 202
++R+ S+ P PPPWA +LH P +YS H+P
Sbjct: 67 ISRAFLSKFPYT----PPPWATYLHP-IPSHFYSLGHLP 100


>tr|A9NUJ2|A9NUJ2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 443

Score = 32.7 bits (73), Expect = 9.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3

Query: 318 VTRSHRSRIPICLRDLPPPWAHFLHERFPCFYYSFPHMP 202
++R+ S+ P PPPWA +LH P +YS H+P
Sbjct: 67 ISRAFLSKFPYT----PPPWATYLHP-IPSHFYSLGHLP 100