BP913523
Clone id YMU001_000031_B10
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAGTTAGTCGAGTACTAAAGACTTTCCATGAATTGGAAAGCTCCCCCACGCACAAACAAC
AAGCAAAGATGCGGGAGAGCATGACAATATCTCTGCTGGGAGAACTGACGGCTCCACTAA
TACTTACTTTGGATGCAAGAGCTATAAGCTCGTGCAAGGTCTAATAATGCCATGACTCTT
CGAATTTTCAGTGGTTGGATCATCCTCCAACAAGACAAGAGGATGGTAGAAAGGTGTGGG
TCTCTTAAGACCTAGCAAATCCAACCTGAAGAGCATTACAATGATGCTAATTTATTCTCA
TATCTATGAGCACTTATCTTTGCATCTCTGCAACGTCTTTTCATTGCCCACTCAGCTACC
TGAGCATTACTCCTTGCATTTAAGCCTACCAGGAACATTCATGTATACAATCCCCGCTAT
GGATAGACATGGAATATGGATTATTGAAGCCAGTGCAAAGCAGCTTATGGAGCATCAAAA
AAGCAATGCTGAGGAACAACAAGATCTTGATTTAAAAAAGCCAATAGGGCACAGAATTGC
T
■■Homology search results ■■ -
sp_hit_id Q52L34
Definition sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthetase domain-containing protein OS=Xenopus laevis
Align length 86
Score (bit) 33.5
E-value 0.69
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913523|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_B10.
(541 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthetase domain... 33 0.69
sp|Q8KCC0|MUTS_CHLTE DNA mismatch repair protein mutS OS=Chlorob... 31 3.4
sp|O49279|FBX3_ARATH F-box only protein 3 OS=Arabidopsis thalian... 30 7.6
sp|O84081|FOLD_CHLTR Bifunctional protein folD OS=Chlamydia trac... 30 9.9
sp|Q3KMU3|FOLD_CHLTA Bifunctional protein folD OS=Chlamydia trac... 30 9.9

>sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthetase
domain-containing protein OS=Xenopus laevis GN=mthfsd
PE=2 SV=1
Length = 415

Score = 33.5 bits (75), Expect = 0.69
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +2

Query: 119 NTYFGCKSYKLVQGLIMP*LFEFSVVGSSSNKTRGW*KGVGLLRPSKSNLKSITMMLIYS 298
+T G K Y + GL + VVGS + +GW G G ++M +
Sbjct: 117 STSQGVKDYSVPMGLDAKVQVDLVVVGSVAVSVQGWRIGKGEGFADMEYAMMVSMGAVTE 176

Query: 299 HIYEHLSLHLCNVFSLPTQLPEHYSL 376
H +H C V +P +L E + L
Sbjct: 177 HTVVVTVVHDCQVVDIPEELLEDHDL 202


>sp|Q8KCC0|MUTS_CHLTE DNA mismatch repair protein mutS OS=Chlorobium
tepidum GN=mutS PE=3 SV=1
Length = 878

Score = 31.2 bits (69), Expect = 3.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2

Query: 353 QLPEHYSLHLSLPGTFMYTIPAMDRHGIWIIEASAK-QLMEHQ 478
++PE+Y +L YTIPA+ + I+ A K QL+EHQ
Sbjct: 498 KVPEYYEKKQTLVNAERYTIPALKEYEEKILTAEEKSQLLEHQ 540


>sp|O49279|FBX3_ARATH F-box only protein 3 OS=Arabidopsis thaliana
GN=FBX3 PE=1 SV=1
Length = 374

Score = 30.0 bits (66), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1

Query: 118 SGAVSSPSRDIVMLSRIFACCLCVGELSNSWKVFSTRLT 2
S S P ++M S +FA C + WK+FS +LT
Sbjct: 192 SNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLT 230


>sp|O84081|FOLD_CHLTR Bifunctional protein folD OS=Chlamydia
trachomatis GN=folD PE=3 SV=1
Length = 287

Score = 29.6 bits (65), Expect = 9.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2

Query: 87 LSCSPASLLVVCAWGSFPIHGKSLVL 10
+ C+PA ++ +C + P+HGK +V+
Sbjct: 133 IPCTPAGIVELCKYYEIPLHGKHVVI 158


>sp|Q3KMU3|FOLD_CHLTA Bifunctional protein folD OS=Chlamydia
trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=folD
PE=3 SV=1
Length = 287

Score = 29.6 bits (65), Expect = 9.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2

Query: 87 LSCSPASLLVVCAWGSFPIHGKSLVL 10
+ C+PA ++ +C + P+HGK +V+
Sbjct: 133 IPCTPAGIVELCKYYEIPLHGKHVVI 158


tr_hit_id A0EBC9
Definition tr|A0EBC9|A0EBC9_PARTE Chromosome undetermined scaffold_88, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 50
Score (bit) 35.4
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913523|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_B10.
(541 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0EBC9|A0EBC9_PARTE Chromosome undetermined scaffold_88, whol... 35 1.9
tr|Q9PAS3|Q9PAS3_XYLFA GTP-binding protein OS=Xylella fastidiosa... 33 9.7
tr|B0U3R3|B0U3R3_XYLFM GTP-binding protein OS=Xylella fastidiosa... 33 9.7
tr|Q3RDF0|Q3RDF0_XYLFA GTP-binding protein, HSR1-related:GTP1/OB... 33 9.7
tr|Q3R3R9|Q3R3R9_XYLFA GTP1/OBG subdomain OS=Xylella fastidiosa ... 33 9.7
tr|A7SML6|A7SML6_NEMVE Predicted protein OS=Nematostella vectens... 33 9.7

>tr|A0EBC9|A0EBC9_PARTE Chromosome undetermined scaffold_88, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00025330001 PE=4 SV=1
Length = 2074

Score = 35.4 bits (80), Expect = 1.9
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3

Query: 297 LISMSTYLCI---SATSFHCPLSYLSITPCI*AYQEHSCIQSPLWIDMEY 437
+IS+S +C+ TS+ P+SYL+ +PC+ Y H C+ S ++I + Y
Sbjct: 806 MISLSQEVCLFGPKVTSYREPMSYLTESPCL-NYNCHICLISQIFIKVSY 854


>tr|Q9PAS3|Q9PAS3_XYLFA GTP-binding protein OS=Xylella fastidiosa
GN=XF_2422 PE=4 SV=1
Length = 347

Score = 33.1 bits (74), Expect = 9.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2

Query: 374 LHLSLPGTFMYTIPAMDRHGIWIIEASAKQLMEHQKSNAEEQ 499
LH + P Y + A+ R G W I SA L EHQ+ A EQ
Sbjct: 304 LHWTAP---WYLVSAVSREGTWPIMKSAMTLFEHQREVAAEQ 342


>tr|B0U3R3|B0U3R3_XYLFM GTP-binding protein OS=Xylella fastidiosa
(strain M12) GN=Xfasm12_1582 PE=4 SV=1
Length = 357

Score = 33.1 bits (74), Expect = 9.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2

Query: 374 LHLSLPGTFMYTIPAMDRHGIWIIEASAKQLMEHQKSNAEEQ 499
LH + P Y + A+ R G W I SA L EHQ+ A EQ
Sbjct: 314 LHWTAP---WYLVSAVSREGTWPIMKSAMTLFEHQREVAAEQ 352


>tr|Q3RDF0|Q3RDF0_XYLFA GTP-binding protein, HSR1-related:GTP1/OBG
subdomain OS=Xylella fastidiosa Dixon GN=XfasaDRAFT_0698
PE=4 SV=1
Length = 357

Score = 33.1 bits (74), Expect = 9.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2

Query: 374 LHLSLPGTFMYTIPAMDRHGIWIIEASAKQLMEHQKSNAEEQ 499
LH + P Y + A+ R G W I SA L EHQ+ A EQ
Sbjct: 314 LHWTAP---WYLVSAVSREGTWPIMKSAMTLFEHQREVAAEQ 352


>tr|Q3R3R9|Q3R3R9_XYLFA GTP1/OBG subdomain OS=Xylella fastidiosa
Ann-1 GN=XfasoDRAFT_1425 PE=4 SV=1
Length = 357

Score = 33.1 bits (74), Expect = 9.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2

Query: 374 LHLSLPGTFMYTIPAMDRHGIWIIEASAKQLMEHQKSNAEEQ 499
LH + P Y + A+ R G W I SA L EHQ+ A EQ
Sbjct: 314 LHWTAP---WYLVSAVSREGTWPIMKSAMTLFEHQREVAAEQ 352


>tr|A7SML6|A7SML6_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g214588 PE=4 SV=1
Length = 720

Score = 33.1 bits (74), Expect = 9.7
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +2

Query: 284 MLIYSHI--YEHLSLHLCNVFSLPTQLPEHYSLHLSLPGTFMYTIPAMDRHGIWIIEASA 457
MLI++++ + L++ CN S+ ++P + + S +++ T ++ +W+I+ +
Sbjct: 57 MLIFANVPGAKKLAVTCCNTESMSEKIPVNEEMTFSKVISYLRTRFNLNERDLWLIDTKS 116

Query: 458 KQLMEHQ 478
KQL+E +
Sbjct: 117 KQLLEER 123