NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913527
Clone id YMU001_000031_C02
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCAAGGGGGAGCGTGAGGGAAGGTCTCCTTTGCAAGCAAAAATAAGCCAGATCTTCGTC
CCCAAGCGACTATCAAAGAAGAAAGAGATAGTTGGTTGCCCCCTCCACGACAAAACCTAT
CTCCATAGCCTTTTGCAACCCCTCAACAAGGGATGCAACGCCTATAAAACCCAATGCACC
ACCCGCCGCAAGGTCGATATGGTTCTCTAGAAAACCCTCCAATAGGGGCCCCCACCCAAC
AATAAGTTGTTGCAACTAGCTAGAGATGCACCTATGGTAGGCTTTGTGAGATCCTCACAC
AGGTGACACATAGATAAATGTTATAAACTTTATGGTTCTTCCTTGACATGTTAAAGTGCA
TTTTATGGTCACACTTTCTAAGCTTGCTCACTATATATATTAGTATGTGATTTGCGCATT
GCTGCAGCCAAAGAAAATCCCTTCTCTCTCTCGCAGGTA
■■Homology search results ■■ -
sp_hit_id Q5ZJ07
Definition sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 OS=Gallus gallus
Align length 70
Score (bit) 33.9
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913527|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C02.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 O...    34   0.35 
sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptoco...    32   1.0  
sp|A1CL82|MCA1B_ASPCL Metacaspase-1B OS=Aspergillus clavatus GN=...    31   2.9  
sp|Q9WTP3|SPDEF_MOUSE SAM pointed domain-containing Ets transcri...    30   3.8  
sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1 OS=Cryptoco...    30   3.8  
sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protei...    30   6.6  
sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium dis...    30   6.6  
sp|Q10203|YBX5_SCHPO Uncharacterized protein C17D1.05 OS=Schizos...    29   8.6  
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2        29   8.6  
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    29   8.6  
sp|Q99014|KPC1_TRIRE Protein kinase C-like OS=Trichoderma reesei...    29   8.6  
sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine ...    29   8.6  
sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase OS...    29   8.6  
sp|Q64317|DLX1_MOUSE Homeobox protein DLX-1 OS=Mus musculus GN=D...    29   8.6  
sp|P56177|DLX1_HUMAN Homeobox protein DLX-1 OS=Homo sapiens GN=D...    29   8.6  
sp|O95872|BAT4_HUMAN Protein BAT4 OS=Homo sapiens GN=BAT4 PE=2 SV=1    29   8.6  

>sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61
           OS=Gallus gallus GN=CCDC61 PE=2 SV=1
          Length = 403

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 16/70 (22%)
 Frame = +2

Query: 2   PRGSVREGLLCKQK*ARSSSPSDYQ----------------RRKR*LVAPSTTKPISIAF 133
           PRG+V  G  C+++  RSSS    Q                +R+R L  PST  P+S + 
Sbjct: 293 PRGTVSSGDNCRRRGRRSSSAESLQSRRSAQSSGSEADTCPQRRRGLGGPSTRSPLSASS 352

Query: 134 CNPSTRDATP 163
           CN ++  + P
Sbjct: 353 CNSTSVASHP 362


>sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1
           OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1
          Length = 625

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 66  ATIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQQ 242
           A ++EER+S  PPP+    P   A P    Q       HPP   + + +  P  AP QQ
Sbjct: 413 AMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQQ 465


>sp|A1CL82|MCA1B_ASPCL Metacaspase-1B OS=Aspergillus clavatus
           GN=casB PE=3 SV=1
          Length = 410

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +3

Query: 48  PDLRPQATIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPI 224
           P   PQ        S+ PPP     P P++TP        +P  HP  G   S  NP +
Sbjct: 32  PPYPPQGPPPPPAHSYSPPPTYGNYPSPYSTPPPHSP---SPYQHPQHGHSRSWTNPSL 87


>sp|Q9WTP3|SPDEF_MOUSE SAM pointed domain-containing Ets
           transcription factor OS=Mus musculus GN=Spdef PE=2 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  PDLRPQATIKEERDSWLPPPRQNLSP*PFATPQQGM 155
           PD+ P+   ++     + P +Q  SP P ATP+QG+
Sbjct: 20  PDVAPRTGTEKAASGAMGPEKQEWSPSPPATPEQGL 55


>sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1
           OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1
          Length = 616

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 66  ATIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQQ 242
           A ++EER+S  PPP+    P   A P    Q       HPP   +    + P  AP QQ
Sbjct: 413 AMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPIQQ 465


>sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protein 2
            OS=Mus musculus GN=Xirp2 PE=1 SV=1
          Length = 3784

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 36   SKNKPDLRPQATIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRY--GSL 209
            S N  +L P+  IKE  DS LPPP    SP P   P      +  P+  PP      G  
Sbjct: 2013 SFNPINLHPECGIKENEDS-LPPP----SPPPL-PPSNASSEIEFPLPPPPPLMLLPGKN 2066

Query: 210  ENPPIGAPTQQ 242
            E+PP  +PT++
Sbjct: 2067 ESPP-SSPTEK 2076


>sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium
           discoideum GN=litaf PE=3 SV=1
          Length = 181

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 102 PPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENP-----PIGAPTQ 239
           PP+Q   P  +  PQQG      P  +PPQ  Y   + P     P+GAP Q
Sbjct: 40  PPQQGYPPQQYP-PQQGYP----PQQYPPQQGYPQQQPPQQYPAPVGAPQQ 85


>sp|Q10203|YBX5_SCHPO Uncharacterized protein C17D1.05
           OS=Schizosaccharomyces pombe GN=SPBC17D1.05 PE=2 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 47  ARSSSPSDYQRRKR*LVAPSTTKPI--SIAFCNPSTRDATPIKPNAPPAA 190
           A   S S   RR+   +AP  T+P    IAF N ST     ++P  PPAA
Sbjct: 234 ANMESLSIPSRRRPSSIAPIGTRPSRKEIAFSNSSTPTDQTLRPPNPPAA 283


>sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2
          Length = 652

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 72  IKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHP-PQGRYGSLENP-PIGAPTQQ* 245
           +K++R SW PPP     P   A+P     R    +H P P      + +P P+G   +Q 
Sbjct: 131 VKKKRQSWFPPP----PPGHNASPSTAASRRDPALHPPLPPKPCSPIASPKPLGRTNRQI 186

Query: 246 VVATS*RC 269
             AT+  C
Sbjct: 187 HAATAGAC 194


>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-5 OS=Caenorhabditis
           elegans GN=mog-5 PE=2 SV=1
          Length = 1200

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 DATPIKPNAPPAARSIWFSRKPSNRGPHPTIS 247
           DA  ++P  PPA+ S W + + S  G  P+ S
Sbjct: 324 DAIGVRPRTPPASTSSWMNPEASGVGQGPSTS 355
tr_hit_id Q9VPX2
Definition tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster
Align length 54
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913527|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C02.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG47...    39   0.17 
tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 P...    39   0.17 
tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM1679...    39   0.17 
tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 P...    39   0.17 
tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK246...    38   0.22 
tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520 ...    38   0.22 
tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI179...    38   0.22 
tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura pseud...    38   0.29 
tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH1117...    38   0.29 
tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL155...    38   0.29 
tr|B4Q6N2|B4Q6N2_DROSI GD23071 OS=Drosophila simulans GN=GD23071...    37   0.37 
tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF1516...    37   0.37 
tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckelia...    36   1.1  
tr|A2DM84|A2DM84_TRIVA Putative uncharacterized protein OS=Trich...    35   1.4  
tr|A6RAH3|A6RAH3_AJECN Predicted protein OS=Ajellomyces capsulat...    35   1.4  
tr|Q39WD9|Q39WD9_GEOMG Putative uncharacterized protein OS=Geoba...    35   2.4  
tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1    35   2.4  
tr|Q0D313|Q0D313_9MOLL Rhodopsin (Fragment) OS=Illex coindetii P...    34   4.1  
tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936 ...    33   9.2  
tr|A2F4K2|A2F4K2_TRIVA Putative uncharacterized protein OS=Trich...    33   9.2  
tr|A1CPM4|A1CPM4_ASPCL G2/M phase checkpoint control protein Sum...    33   9.2  

>tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG4726
           PE=2 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM16795
           PE=4 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK24669
           PE=4 SV=1
          Length = 514

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 401 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 454


>tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI17977
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA18388 PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456


>tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH11174
           PE=4 SV=1
          Length = 510

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 397 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 450


>tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL15573
           PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 243 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 91
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456