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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913530
Clone id YMU001_000031_C05
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAGAGGAAGAGCGTGCTTGTGAGGACAAGAAAAGAAAGACAGTGGACAGAGTGTGCA
AACTTGGGAAATAGGGAACACATCAAGTATTACATGGCACCTTCTGTCTGTGTGTGCTAC
ATGCATATTTCCCAGTCTATGGTAATACAGCTGGTGGTCGCTATGCTGAGCTCATGTGGA
CTGTTGTCGTGACACCATTGGTCGCATATGCTGGGTGGACATGGCTCAGCTGTATAGAGG
GGTGCTATTACACTCTCTTTACTCGATTGTGAGTAATATTCATTTGGCATTGGTTTATAG
CATGTCAAGAGGTACTGAGCTGACAGTACTCTACCTAGGATTATCTGCACACGTACATAA
TTGTTGCAACTCTGTTAACGCTTCAGACTTTTGGTCATGAGAAACCTTTTGTTTATTGAT
TGAATTTTTGAGATGAGTGCATCAGACATCTGGATGAGTCTTTTGAAACATTGGACCAGG
ATGTGATGGCTAGTAGATACATTTCAGTCTAGTGTAAAA
■■Homology search results ■■ -
sp_hit_id P04540
Definition sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=Trypanosoma brucei brucei
Align length 81
Score (bit) 33.9
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913530|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C05.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=T...    34   0.47 
sp|P14612|NXLH_PSEAU Long neurotoxin homolog Pa ID OS=Pseudechis...    31   3.0  
sp|P16848|UL31_HCMVA Uncharacterized protein UL31 OS=Human cytom...    31   4.0  
sp|Q9PTK2|FOXE4_XENLA Forkhead box protein E4 OS=Xenopus laevis ...    30   8.8  

>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5
           OS=Trypanosoma brucei brucei GN=ND5 PE=3 SV=1
          Length = 590

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = +3

Query: 87  VLHGTFCLCVLHAYFPVYGNTAGGRYAELMWTVVVTP---------LVAYAGWTWLSCIE 239
           +++  FC  V +A++ +Y +   GR+  + W  VV           L AY GW  L    
Sbjct: 88  LINMVFCFIVFYAFYYMYFDMLLGRFLIIFWIFVVCMNLFILSYDFLTAYCGWELLG--- 144

Query: 240 GCYYTLFTRL*VIFIWHWFIA 302
                LF+   + + W+ F A
Sbjct: 145 -----LFSFFLISYFWYRFFA 160


>sp|P14612|NXLH_PSEAU Long neurotoxin homolog Pa ID OS=Pseudechis
           australis PE=1 SV=1
          Length = 68

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -2

Query: 308 LTCYKPMPNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPHELSIATTSC 147
           LTCYK       +  S++ +         C  + CDQWC D  P      T +C
Sbjct: 1   LTCYKGRDRSSETCRSEQELC--------CTKTWCDQWCQDRGPRLEMGCTATC 46


>sp|P16848|UL31_HCMVA Uncharacterized protein UL31 OS=Human
           cytomegalovirus (strain AD169) GN=UL31 PE=3 SV=2
          Length = 595

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 111 CVLHAYFPVYGNTAGGRYAELMWTVVVTPLVAYAGWTWLSC 233
           C+  ++  +Y NT G  Y +  W+ VVTP  AYA   +L C
Sbjct: 187 CIFLSFPVIYNNTQGCGY-KYDWSNVVTPKAAYAELFFLLC 226


>sp|Q9PTK2|FOXE4_XENLA Forkhead box protein E4 OS=Xenopus laevis
           GN=foxe4 PE=2 SV=1
          Length = 365

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 251 HSLYSIVSNIHLALVYSMSRGTELTVLYLGLSAHVHNCCNSVNASD 388
           H ++SI S I+   +   S G ELT   LGL+ ++ N  NS +  D
Sbjct: 212 HRMFSIDSLINQQSLMQPSPGAELTHHSLGLNGNLGNMTNSCSVGD 257
tr_hit_id Q7QJ21
Definition tr|Q7QJ21|Q7QJ21_ANOGA AGAP007210-PA OS=Anopheles gambiae
Align length 70
Score (bit) 38.5
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913530|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C05.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7QJ21|Q7QJ21_ANOGA AGAP007210-PA OS=Anopheles gambiae GN=AGA...    39   0.20 
tr|A6TLZ2|A6TLZ2_ALKMQ 4Fe-4S ferredoxin, iron-sulfur binding do...    35   2.2  
tr|A5L3J8|A5L3J8_9GAMM Putative uncharacterized protein OS=Vibri...    35   2.9  
tr|B7VS07|B7VS07_VIBSP Putative uncharacterized protein OS=Vibri...    34   3.8  
tr|A3Y2E6|A3Y2E6_9VIBR Putative uncharacterized protein OS=Vibri...    34   3.8  
tr|A8HDK5|A8HDK5_PSEAU LNTX-ID OS=Pseudechis australis PE=3 SV=1       34   5.0  
tr|Q239D7|Q239D7_TETTH Putative uncharacterized protein OS=Tetra...    34   5.0  
tr|B6DE59|B6DE59_ANODA Tetraspanin OS=Anopheles darlingi PE=2 SV=1     34   5.0  
tr|A6LRH3|A6LRH3_CLOB8 Extracellular solute-binding protein, fam...    33   6.5  
tr|A3UW07|A3UW07_VIBSP Putative uncharacterized protein OS=Vibri...    33   6.5  
tr|Q4WS04|Q4WS04_ASPFU Fungal specific transcription factor, put...    33   8.5  
tr|B0XMS5|B0XMS5_ASPFC Fungal specific transcription factor, put...    33   8.5  
tr|A1D1X1|A1D1X1_NEOFI Fungal specific transcription factor, put...    33   8.5  

>tr|Q7QJ21|Q7QJ21_ANOGA AGAP007210-PA OS=Anopheles gambiae
           GN=AGAP007210 PE=4 SV=4
          Length = 285

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 75  GTHQVLHGTFCLCVLHAYFPVYGNTAGGRYAELMWTVVVTPLVAYAGWTWLSCIEGCYYT 254
           G  Q++ G F L     Y P+  N     +A L+   +++  + Y GWT  S  + CY  
Sbjct: 25  GGAQLVIGAFLLWTHKQYAPIVKNQFWEPFAVLIGLGIISQALCYLGWTSTSRKQRCYLG 84

Query: 255 LFTRL*VIFI 284
           LF    V+FI
Sbjct: 85  LFCAFLVLFI 94


>tr|A6TLZ2|A6TLZ2_ALKMQ 4Fe-4S ferredoxin, iron-sulfur binding
           domain protein OS=Alkaliphilus metalliredigens (strain
           QYMF) GN=Amet_0993 PE=4 SV=1
          Length = 360

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 281 EYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPHELSIATTSCITIDWEIC 123
           E YS   K+  +     AEPC      + C D+ P E    T SC+ ID E+C
Sbjct: 13  ENYSSIDKKRCLYQRNQAEPC------RICQDHCPSEAISLTKSCVEIDEEVC 59


>tr|A5L3J8|A5L3J8_9GAMM Putative uncharacterized protein
           OS=Vibrionales bacterium SWAT-3 GN=VSWAT3_02536 PE=4
           SV=1
          Length = 484

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 287 PNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPH 174
           P EYY   SKE +IA     +P  P+  D+WC   + H
Sbjct: 134 PEEYYKLYSKEELIALSKKTQPLKPTSLDEWCIPFAKH 171


>tr|B7VS07|B7VS07_VIBSP Putative uncharacterized protein OS=Vibrio
           splendidus LGP32 GN=VS_II0756 PE=4 SV=1
          Length = 484

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 287 PNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPH 174
           P EYY   SKE ++A     +P  P+  D+WC   + H
Sbjct: 134 PEEYYKLYSKEELLALAAQTQPLKPTSLDEWCIPFAKH 171


>tr|A3Y2E6|A3Y2E6_9VIBR Putative uncharacterized protein OS=Vibrio
           sp. MED222 GN=MED222_06700 PE=4 SV=1
          Length = 484

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 287 PNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPH 174
           P EYY   SKE ++A     +P  P+  D+WC   + H
Sbjct: 134 PEEYYKLYSKEELLALAAQTQPLKPTSLDEWCIPFAKH 171


>tr|A8HDK5|A8HDK5_PSEAU LNTX-ID OS=Pseudechis australis PE=3 SV=1
          Length = 89

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = -2

Query: 326 LSAQYLLTCYKPMPNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPHELSIATTSC 147
           L   Y LTCYK       +  S++ +         C  + CDQWC D  P      T +C
Sbjct: 16  LDLGYTLTCYKGRDRSSETCRSEQELC--------CTKTWCDQWCQDRGPRLEMGCTATC 67


>tr|Q239D7|Q239D7_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00448780 PE=4
           SV=1
          Length = 537

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -2

Query: 446 SDALISKIQSINKRFLMTK-SLKR*QSCNNYVRVQIILGRVLSAQY----LLTCYKPMPN 282
           SDAL S  ++I K   +TK SLK  Q  N Y+ +QI L + L  Q+       C     N
Sbjct: 144 SDALESLFKTIAKFSKLTKLSLKLKQQINKYILIQIKLKQKLINQWSFCGFFQCSITWKN 203

Query: 281 EYYSQSSKESVIAP 240
            +Y+  S  S I P
Sbjct: 204 NWYATQSTNSQIEP 217


>tr|B6DE59|B6DE59_ANODA Tetraspanin OS=Anopheles darlingi PE=2 SV=1
          Length = 287

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +3

Query: 75  GTHQVLHGTFCLCVLHAYFPVYGNTAGGRYAELMWTVVVTPLVAYAGWTWLSCIEGCYYT 254
           G+ Q++ G F L     Y  +  N     YA L+   +++ L+ Y GWT  S    CY  
Sbjct: 25  GSAQLVIGAFLLWNHRQYSQIVKNQFWEPYAVLIGLGIISQLLCYFGWTSTSRKHRCYLG 84

Query: 255 LFTRL*VIFI 284
            F    V+ I
Sbjct: 85  TFCAFQVLLI 94


>tr|A6LRH3|A6LRH3_CLOB8 Extracellular solute-binding protein, family
           1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=Cbei_0769 PE=3 SV=1
          Length = 442

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 477 GPMFQKTHPDV*CTHLKNSINKQKVSHDQKSEALTELQQLCTCAD 343
           G M+Q+ HPD     L N +NK +V  D   E  T + +L  CAD
Sbjct: 214 GAMYQQKHPD-----LYNKLNKNEVDLDSIPELQTIINELKECAD 253


>tr|A3UW07|A3UW07_VIBSP Putative uncharacterized protein OS=Vibrio
           splendidus 12B01 GN=V12B01_14085 PE=4 SV=1
          Length = 484

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 287 PNEYYSQSSKESVIAPLYTAEPCPPSICDQWCHDNSPH 174
           P EYY   SKE ++A     +P  P+  D WC   + H
Sbjct: 134 PEEYYKLYSKEELLALATQTQPLKPTSLDDWCIPFAKH 171