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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913532
Clone id YMU001_000031_C07
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCAAAATATCCTATTTCAAGCACTTCCTCCCATTCCACAATGGAACGTGTGACACATA
TCTTTCCCTTCCTCATGGTCCTCTTCCACATCTCATTCCCATTCTCTGTCCTCCTCTTCA
ACATTCTCGCAGACTTTTTTTTCTTTTCCTTGGTATCTAAATCTAATGCAGCCTCAAGGA
AGATCCCATATATTGAACCACAGACAAACTGTACATACTCCAAGTGCCCACCTTCAACCT
CAGGCTCATAATTGATAAGAAACAAAGAAGATGGATCGAAAGAAGCAATTTCCATCATCC
CATAGGCGATCCACACAACGTTGTTGTCCGTCTTCGCGGCAGGCTCAAAGCAATCACTAT
TCAGAAGCTCAACTTGCCATATCTGCGGATATACCAATTCTATGATAGTTATATCTGCAT
GAAGCCTCCAAGAATCCTGAGAAGCATCATATACAGAGACTTCTAATCTCTGATTAGAAA
CAGACTGCCTCTCTGTAAAACTGTAAAGCTTCTCTTCAAATGTTG
■■Homology search results ■■ -
sp_hit_id Q73JM1
Definition sp|Q73JM1|OXAA_TREDE Inner membrane protein oxaA OS=Treponema denticola
Align length 109
Score (bit) 35.4
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913532|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C07.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q73JM1|OXAA_TREDE Inner membrane protein oxaA OS=Treponema de...    35   0.16 
sp|Q89BQ0|OXAA_BRAJA Inner membrane protein oxaA OS=Bradyrhizobi...    33   0.78 
sp|Q99LL5|PWP1_MOUSE Periodic tryptophan protein 1 homolog OS=Mu...    32   2.3  
sp|P02241|HCYD_EURCA Hemocyanin D chain OS=Eurypelma californica...    30   5.0  
sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=...    30   5.0  
sp|Q8G4M3|MURE_BIFLO UDP-N-acetylmuramyl-tripeptide synthetase O...    30   6.6  
sp|Q9LUP5|FBK59_ARATH F-box/Kelch-repeat protein At3g17530 OS=Ar...    30   6.6  
sp|Q9CA02|FB198_ARATH F-box protein At3g49510 OS=Arabidopsis tha...    30   6.6  
sp|A7GXH6|F16PA_CAMC5 Fructose-1,6-bisphosphatase class 1 OS=Cam...    30   6.6  
sp|Q9CR10|CQ090_MOUSE Uncharacterized protein C17orf90 homolog O...    30   6.6  
sp|P08355|VGLB_SUHVF Glycoprotein GII OS=Suid herpesvirus 1 (str...    30   8.6  
sp|Q7N3W6|SYY1_PHOLL Tyrosyl-tRNA synthetase 1 OS=Photorhabdus l...    30   8.6  
sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bo...    30   8.6  
sp|Q1QH68|OXAA_NITHX Inner membrane protein oxaA OS=Nitrobacter ...    30   8.6  
sp|Q96PH1|NOX5_HUMAN NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=...    30   8.6  
sp|Q9LW55|FB180_ARATH Putative F-box protein At3g23420 OS=Arabid...    30   8.6  
sp|Q2NJ28|CNPD_AYWBP 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    30   8.6  

>sp|Q73JM1|OXAA_TREDE Inner membrane protein oxaA OS=Treponema
           denticola GN=oxaA PE=3 SV=1
          Length = 582

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = +3

Query: 18  SSTSSHSTMERVTHIFPFLMVLFHISFP---FSVLLFNILADFFFFSLVSKSNAASRKIP 188
           S  +S   +  +  +  F+M +F+   P    ++LL  +L    FF L  KS+ A++++ 
Sbjct: 351 SLAASSGFLAPLERVLKFVMEIFYKIIPNWGVALLLLTLLMRIIFFPLTKKSSEATKRMQ 410

Query: 189 YIEPQTN---CTYSKCPPSTSGS*LIRNKEDGSKEAISIIP*AIHTTLL 326
            ++PQ N     Y   P   +   +   KE G   A   +P  I    L
Sbjct: 411 ELQPQINELQQKYKNNPQKLNAEMVKFYKEAGYNPASGCLPLLIQLPFL 459


>sp|Q89BQ0|OXAA_BRAJA Inner membrane protein oxaA OS=Bradyrhizobium
           japonicum GN=oxaA PE=3 SV=1
          Length = 616

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 84  FHISFPFSVLLFNILADFFFFSLVSKSNAASRKIPYIEPQTNCTYSKCP 230
           F  +F  S+LL  ++    FF L +KS A+  K+  I+PQ      + P
Sbjct: 388 FFGNFGISILLVTVIVKLLFFPLANKSYASMAKMKSIQPQLQALKERYP 436


>sp|Q99LL5|PWP1_MOUSE Periodic tryptophan protein 1 homolog OS=Mus
           musculus GN=Pwp1 PE=1 SV=1
          Length = 501

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 8/154 (5%)
 Frame = -3

Query: 466 LEVSVYDASQDSWRLHADITIIELVYPQIWQVELLNSDCFEPAAKTDNNVVWIAYGMMEI 287
           LEV VY+  ++S+ +H DI +    YP    VE LN D   P A T N   +IA G    
Sbjct: 163 LEVHVYNQEEESFYVHHDILL--SAYP--LSVEWLNFDP-SPDASTGN---YIAVG---- 210

Query: 286 ASFDPSSLFLINYEPEVEGGHLEYVQFVCGSIYGIFLEAALDLDTKEKKKKSARMLKRRT 107
                      N  P +E   L+ V           LE    L +K  KKK  +  K  +
Sbjct: 211 -----------NMTPVIEVWDLDIVD---------SLEPVFTLGSKLSKKKKKKGKKSSS 250

Query: 106 ENGNE------MWKRTMRK--GKICVTRSIVEWE 29
             G+        W +T+R          ++V W+
Sbjct: 251 AEGHTDAVLDLSWNKTVRNVLASASADSTVVLWD 284


>sp|P02241|HCYD_EURCA Hemocyanin D chain OS=Eurypelma californica
           GN=HCD PE=1 SV=3
          Length = 627

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 242 RLIIDKKQRRWIERSNFHHPIGDPHNVVVRLRGRLKAITIQKL 370
           RLI+++++R +IE   FH  +    NV+VR  G   ++T+ K+
Sbjct: 469 RLILEEQRRLYIELDKFHRRLEPGKNVLVRASGD-SSVTLSKV 510


>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm
            OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2
          Length = 4499

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 312  HTTLLSVFAAGSKQSLFRSSTCHICGYTNSMIVI 413
            H  L+ V  +G KQSL R +  HICGY   MIVI
Sbjct: 2712 HALLVGVGGSG-KQSLARLAA-HICGYATQMIVI 2743


>sp|Q8G4M3|MURE_BIFLO UDP-N-acetylmuramyl-tripeptide synthetase
           OS=Bifidobacterium longum GN=murE PE=3 SV=1
          Length = 517

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 233 FNLRLIIDKKQRRWIERSNFHHPIGDPHNVVVRLRG 340
           FN+ LII K   RWI+    H P     +VV R+ G
Sbjct: 481 FNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFG 516


>sp|Q9LUP5|FBK59_ARATH F-box/Kelch-repeat protein At3g17530
           OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=1
          Length = 392

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 487 QSVSNQRLEVSVYDASQDSWRLHADITIIELVY 389
           Q++S    E  +YD S DSWR   DIT   +VY
Sbjct: 173 QNLSLMAAEFEIYDFSTDSWRDLGDITRDMIVY 205


>sp|Q9CA02|FB198_ARATH F-box protein At3g49510 OS=Arabidopsis
           thaliana GN=At3g49510 PE=2 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 505 YSFTERQSVSNQRLEVSVYDASQDSWRL 422
           + + E  + S++R  + VYD S DSWR+
Sbjct: 160 FLYDEESNESSRRTHIDVYDFSSDSWRV 187


>sp|A7GXH6|F16PA_CAMC5 Fructose-1,6-bisphosphatase class 1
           OS=Campylobacter curvus (strain 525.92) GN=fbp PE=3 SV=1
          Length = 299

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 292 EIASFDPSSLFLINYEPEVEGGHLEYVQFVCGSIYGIF 179
           EI   + +  F+I Y+P ++G  L  V F  GSI+GI+
Sbjct: 83  EILPINTNGKFIIAYDP-LDGSSLVDVNFAVGSIFGIY 119


>sp|Q9CR10|CQ090_MOUSE Uncharacterized protein C17orf90 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 201

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 186 PYIEPQTNCTYSKCPPST---SGS*LIRNKEDGSKEAISII 299
           P +EP TNC  S CP          L+R  +DG ++A++I+
Sbjct: 136 PELEPPTNCCMSGCPNCVWVDYAEALLRLYQDGGEKALAIL 176
tr_hit_id B0CQZ9
Definition tr|B0CQZ9|B0CQZ9_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 135
Score (bit) 36.6
E-value 0.72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913532|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C07.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CQZ9|B0CQZ9_LACBS Predicted protein OS=Laccaria bicolor (st...    37   0.72 
tr|Q7PWF5|Q7PWF5_ANOGA AGAP008985-PA (Fragment) OS=Anopheles gam...    35   1.6  
tr|A8G8Q7|A8G8Q7_SERP5 Putative uncharacterized protein OS=Serra...    35   2.1  
tr|Q3ESD6|Q3ESD6_BACTI Putative uncharacterized protein OS=Bacil...    35   2.1  
tr|B7IKE9|B7IKE9_BACCE Putative uncharacterized protein OS=Bacil...    35   2.1  
tr|A2AX58|A2AX58_LIMPO Hemocyanin subunit IV OS=Limulus polyphem...    35   2.1  
tr|Q4XWE1|Q4XWE1_PLACH Putative uncharacterized protein (Fragmen...    35   2.7  
tr|P95942|P95942_SULSO Orf c04003 protein (Putative uncharacteri...    34   3.6  
tr|A5ESP6|A5ESP6_BRASB Protein translocase subunit yidC OS=Brady...    34   4.7  
tr|A7LFI0|A7LFI0_TRICA Cytochrome P450 OS=Tribolium castaneum PE...    33   6.1  
tr|Q2LRR3|Q2LRR3_SYNAS Transcription-repair coupling factor OS=S...    33   8.0  
tr|B7IGZ7|B7IGZ7_9THEM Methicillin resistance protein OS=Thermos...    33   8.0  
tr|A3ZP07|A3ZP07_9PLAN Putative uncharacterized protein (Fragmen...    33   8.0  
tr|B8LE24|B8LE24_THAPS Predicted protein OS=Thalassiosira pseudo...    33   8.0  
tr|Q9YI02|Q9YI02_DANRE Nuclear oncoprotein OS=Danio rerio GN=ski...    33   8.1  

>tr|B0CQZ9|B0CQZ9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_300960 PE=4 SV=1
          Length = 629

 Score = 36.6 bits (83), Expect = 0.72
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
 Frame = +3

Query: 39  TMERVTHI-FPFLMVLFHISFPFSVLLFNILADF--FFFSLVSKSNAASRKIPY------ 191
           T  R T I F F +V F I   F +  F+I A    F  S+V + +AA   +P+      
Sbjct: 24  TFTRSTTIYFAFSVVHFLIQLSFQIKAFSINAQAAQFLTSIVVQGHAAGSSLPFLHGNTL 83

Query: 192 -----IEPQTNCTYSKCPPSTSGS*LIRNKEDGSKEAISIIP*AIHTTLLSVFAAGSKQS 356
                + P  N   S CP   +G+ +  + ED  K+ I     A  TT LS   A S  S
Sbjct: 84  RLCSWVPPNLNVDISSCPLVWNGT-ITSDTEDHVKDFIRTAA-ASTTTSLSTSHAFSANS 141

Query: 357 LFRSSTCHICGYTNS 401
              + T  + G+T S
Sbjct: 142 SSTTFTNLLPGFTTS 156


>tr|Q7PWF5|Q7PWF5_ANOGA AGAP008985-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP008985 PE=4 SV=4
          Length = 474

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
 Frame = -3

Query: 394 VYPQIWQVELLNSDCFEPAAKTDNNVVWIAYGMMEIASFDPSSLFL----INYEPEVEGG 227
           + P   Q +LL ++C     + +     IA  +M+  S +  ++++    + Y   +E G
Sbjct: 147 IAPGSIQNKLLKAECLAMLERFEE-ACNIAISIMQTHSTNADAIYVRGLTLYYSDNLEKG 205

Query: 226 HLEYVQFVCGSIYGIFLEAALDLDTKEKKKKS----ARMLKRRTENGNEMWK 83
            L +             E AL LD   KK K+    A+ LK + E+GNE+WK
Sbjct: 206 LLHF-------------ERALMLDPDHKKAKAMRQKAKQLKEKKESGNELWK 244


>tr|A8G8Q7|A8G8Q7_SERP5 Putative uncharacterized protein OS=Serratia
           proteamaculans (strain 568) GN=Spro_0389 PE=3 SV=1
          Length = 345

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
 Frame = -3

Query: 412 ITIIELVYPQIW-----QVELLNSDCFEPAAKTDNNVVWIAYGMMEIASFDPSSLFLINY 248
           + I  ++ P+IW     +V+  N       ++ ++++ W+ +G + + +F    +F+  +
Sbjct: 36  LVISAIITPKIWIIKRSRVDTRNGSRELRRSRYEHSIAWMLFGSVSMFAF----IFITEF 91

Query: 247 EPEVEGGHLEYVQFVCGSIYGIFLEAALDLDTKEKKKKSARMLKRRTENGNEMWKRTMRK 68
              V+ G      F+  S + IF+ +   L   E               GN+M    +R 
Sbjct: 92  VSSVDYG----AGFLIASFFSIFISSYYYLSNSEGS----------VGKGNKMIAWAIRV 137

Query: 67  GKICVTRSIVEWEEVLEIGYFE 2
             I  +  I+ W +V  +GY +
Sbjct: 138 FSILSSFIILSWSKVAAMGYMD 159


>tr|Q3ESD6|Q3ESD6_BACTI Putative uncharacterized protein OS=Bacillus
           thuringiensis serovar israelensis ATCC 35646
           GN=RBTH_03977 PE=4 SV=1
          Length = 186

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
 Frame = -3

Query: 373 VELLNSDCFEPAAKTDNNVVWIAYGMMEIASFDPSSLFLINYEPEVEGGHLEYVQFVC-- 200
           V L  ++ FE  +K+D + +   Y    I +FD  S          +  ++ YV+ +   
Sbjct: 54  VSLFRNEIFEEVSKSDLSGMIFTY----IWAFDLQS----------DWDYIHYVESIFES 99

Query: 199 --GSIYGIFLEAALDLDTKEKKKKSARMLKRRTENGNEMW-----KRTMRKGKICVTRSI 41
             G++Y I LEA  +LD + ++ KS   L+ + +  +  W     K TM+K ++      
Sbjct: 100 KGGTVYFIELEA--ELDERLERNKSPNRLEHKPKKRDIEWSQNNLKETMKKHRLNSLHGE 157

Query: 40  VEWEEVLEI 14
           +E EE ++I
Sbjct: 158 IEKEEYIKI 166


>tr|B7IKE9|B7IKE9_BACCE Putative uncharacterized protein OS=Bacillus
           cereus G9842 GN=BCG9842_B2423 PE=4 SV=1
          Length = 186

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
 Frame = -3

Query: 373 VELLNSDCFEPAAKTDNNVVWIAYGMMEIASFDPSSLFLINYEPEVEGGHLEYVQFVC-- 200
           V L  ++ FE  +K+D + +   Y    I +FD  S          +  ++ YV+ +   
Sbjct: 54  VSLFRNEIFEEVSKSDLSGMIFTY----IWAFDLQS----------DWDYIHYVESIFES 99

Query: 199 --GSIYGIFLEAALDLDTKEKKKKSARMLKRRTENGNEMW-----KRTMRKGKICVTRSI 41
             G++Y I LEA  +LD + ++ KS   L+ + +  +  W     K TM+K ++      
Sbjct: 100 KGGTVYFIELEA--ELDERLERNKSPNRLEHKPKKRDIEWSQNNLKETMKKHRLNSLHGE 157

Query: 40  VEWEEVLEI 14
           +E EE ++I
Sbjct: 158 IEKEEYIKI 166


>tr|A2AX58|A2AX58_LIMPO Hemocyanin subunit IV OS=Limulus polyphemus
           GN=hcIV PE=2 SV=1
          Length = 624

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +2

Query: 242 RLIIDKKQRRWIERSNFHHPIGDPHNVVVRLRGRLKAITIQKLN 373
           RLI+++++R +IE   FHH I   HN +VR      ++T+ K++
Sbjct: 469 RLILNEQRRLFIELDKFHHGIHKGHNTIVR-NSTESSVTVSKIH 511


>tr|Q4XWE1|Q4XWE1_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC105304.00.0 PE=4 SV=1
          Length = 163

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 248 IIDKKQ---RRWIERSNFHHPIGDPHNVVVRLRGRLKAITIQKL 370
           I D+KQ   R  IE SN  H   DPHN+  +L+G    I+I++L
Sbjct: 74  IEDEKQKLFRELIEASNLSHDESDPHNIKTKLKGFKYGISIKEL 117


>tr|P95942|P95942_SULSO Orf c04003 protein (Putative uncharacterized
           protein) OS=Sulfolobus solfataricus GN=orf c04003 PE=4
           SV=2
          Length = 506

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +3

Query: 66  PFLMV-LFHISFPFSVLLFN---ILADFFFFSLVSKSNAASRKIPYI 194
           PF++V LFH+S  + +L+F    I+  FF +  +S ++A    +PYI
Sbjct: 283 PFILVFLFHLSLEYEILVFYSIFIMFSFFIYRKISVADAILNNLPYI 329


>tr|A5ESP6|A5ESP6_BRASB Protein translocase subunit yidC
           OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
           GN=oaxA PE=3 SV=1
          Length = 621

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 84  FHISFPFSVLLFNILADFFFFSLVSKSNAASRKIPYIEPQTNCTYSKCP 230
           F  +F  S+LL  +L    FF L +KS A+  K+  I+PQ      + P
Sbjct: 393 FFGNFGISILLVTVLVKLLFFPLANKSYASMAKMKAIQPQLQALKERYP 441


>tr|A7LFI0|A7LFI0_TRICA Cytochrome P450 OS=Tribolium castaneum PE=2
           SV=1
          Length = 493

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 305 GDPHNVVVR---LRGRLKAITIQKLNLPYLRIYQFYDSYICMKPPRILRSIIYRDF 463
           G  +N+V+R   +  R++ I  Q  + PY+ IY F+   + ++ P ILR ++ +DF
Sbjct: 39  GSFYNLVIRKEHIFERIRTIYNQ-FSTPYVGIYIFHQPVLLIRSPEILRKVLVKDF 93