BP913535
Clone id YMU001_000031_C10
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTCCTGGAAGAATTCGCGGGCGCAGGAATTCTTTATTGGTTTCATTTGACGGAAGGAATA
TATACAATAGAATAGTGATGGGTGTTTCTAAATTAGGGTCTAGAGCCTGAATGACCAAAG
GGAAAAATCCAGTGGGAAAAAATGCCTTTGGTATACGCTCTTATTGGGGTTGAACACTTG
GAAGTTGAGTACCTGTTCATGCAAGGTAAGTGCTTGGGAGAAATAAAGTAAGAGTGCGTA
ATGCAAGTGCCAATTATGGGACACTCTATATGCACACAAGAGTTCTTTCAAGAAAATCAT
GCGGTGTGAAAAATGAGTTGTTGGTTCTTACAGCATCTGATGGAAATGCACTGAGTGACT
AGATTATAGACTCAGGGGCATCACTTCATGTGTCTCCAAACAAGGAGTGGTTTACCTCTT
ATGTGACCACTAAAGATCATGTTCGGCTAGGAAATGGGCAGACATGTGAGATCTTAGGTG
TTGGAGATGTTCAATTGAAGTCTCAGAATGGCTCTTCTTTCACGCTGAAGAATGTG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 62
Score (bit) 42.0
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913535|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C10.
(506 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 42 0.002
sp|Q10197|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosacchar... 32 2.2
sp|Q2N7Y8|FPG_ERYLH Formamidopyrimidine-DNA glycosylase OS=Eryth... 30 6.5

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 42.0 bits (97), Expect = 0.002
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3

Query: 324 SD*IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLK 500
S+ ++D+ AS H +P ++ F YV V++GN +I G+GD+ +K+ G + LK
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 351

Query: 501 NV 506
+V
Sbjct: 352 DV 353


>sp|Q10197|ALP1_SCHPO Tubulin-folding cofactor D
OS=Schizosaccharomyces pombe GN=alp1 PE=1 SV=2
Length = 1121

Score = 31.6 bits (70), Expect = 2.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3

Query: 264 FLKELLCAYRVSHN--WHLHYALLLYFSQAL 178
++KEL S N WH HY +LL+ SQAL
Sbjct: 113 YIKELYTLLNESSNNTWHFHYIVLLWLSQAL 143


>sp|Q2N7Y8|FPG_ERYLH Formamidopyrimidine-DNA glycosylase
OS=Erythrobacter litoralis (strain HTCC2594) GN=mutM
PE=3 SV=1
Length = 271

Score = 30.0 bits (66), Expect = 6.5
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +3

Query: 219 ANYGTLYM-----HTRVLSRKSCG--VKNELLVLTASDGNALSD*IIDSGASLHVSPNKE 377
A G +Y+ H R+ RK+ G K L +L + + L I D G+SL +
Sbjct: 166 AGLGNIYVCEALWHARIHPRKAGGRVSKQALSLLITAIRDVLEQSIRDGGSSLRDYAQPD 225

Query: 378 WFTSYVTTKDHVRLGNGQTCEILGVGDVQLKSQNGSS 488
Y T+ V +GQ C G ++ +Q G S
Sbjct: 226 GELGYFATRFQVYGRDGQPCHRDDGGTIRRFAQGGRS 262


tr_hit_id A5B4R8
Definition tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 59
Score (bit) 63.2
E-value 7.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913535|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_C10.
(506 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis... 63 7e-09
tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis... 62 1e-08
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 62 2e-08
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis... 61 3e-08
tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis... 61 3e-08
tr|A5BM67|A5BM67_VITVI Putative uncharacterized protein (Fragmen... 60 8e-08
tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis... 59 1e-07
tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-co... 58 2e-07
tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co... 58 2e-07
tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co... 58 2e-07
tr|Q0IN60|Q0IN60_ORYSJ Os12g0503600 protein OS=Oryza sativa subs... 58 2e-07
tr|Q0E1G5|Q0E1G5_ORYSJ Os02g0450400 protein OS=Oryza sativa subs... 58 2e-07
tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G... 58 2e-07
tr|A5C0Q1|A5C0Q1_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07
tr|A5AJ06|A5AJ06_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07
tr|Q75HA9|Q75HA9_ORYSJ Putative polyprotein (Retrotransposon pro... 57 7e-07
tr|Q2QSQ2|Q2QSQ2_ORYSJ Retrotransposon protein, putative, Ty1-co... 57 7e-07
tr|A5BVV6|A5BVV6_VITVI Putative uncharacterized protein (Fragmen... 57 7e-07
tr|Q94LG0|Q94LG0_ORYSJ Putative retroelement pol polyprotein (Re... 55 1e-06
tr|Q2QW17|Q2QW17_ORYSJ Retrotransposon protein, putative, Ty1-co... 55 1e-06
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b... 55 2e-06
tr|Q75IK3|Q75IK3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 55 3e-06
tr|B1N668|B1N668_SOLLC Copia LTR rider OS=Solanum lycopersicum G... 54 3e-06
tr|A5AQK3|A5AQK3_VITVI Putative uncharacterized protein OS=Vitis... 53 7e-06
tr|Q2QUC6|Q2QUC6_ORYSJ Retrotransposon protein, putative, Ty1-co... 53 1e-05
tr|A7PHV1|A7PHV1_VITVI Chromosome chr13 scaffold_17, whole genom... 53 1e-05
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis... 53 1e-05
tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ... 52 1e-05
tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-co... 52 1e-05
tr|A5C944|A5C944_VITVI Putative uncharacterized protein OS=Vitis... 52 1e-05

>tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018405 PE=4 SV=1
Length = 1302

Score = 63.2 bits (152), Expect = 7e-09
Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+IDSGAS+H +P K++FTSY + VR+GN + + +G+GDV+L++ NG+ TLKNV
Sbjct: 159 VIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNV 217


>tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030853 PE=4 SV=1
Length = 1017

Score = 62.4 bits (150), Expect = 1e-08
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+IDSGAS+H +P K++FTSY + VR+GN + +G+GDV+L++ NG+ TLKNV
Sbjct: 46 VIDSGASIHATPRKDFFTSYTFSDFGSVRMGNDGLAKAIGMGDVRLETSNGTMLTLKNV 104


>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1
Length = 1392

Score = 61.6 bits (148), Expect = 2e-08
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+IDSGAS+H +P K++FTSY + VR+GN + + +G+GDV L++ NG+ TLKNV
Sbjct: 162 VIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVCLETSNGTMLTLKNV 220


>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007304 PE=4 SV=1
Length = 1362

Score = 61.2 bits (147), Expect = 3e-08
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+ID GAS+H +P K++FTSY + VR+GN + + +G+GDV+L++ NG+ TLKNV
Sbjct: 272 VIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNV 330


>tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012088 PE=4 SV=1
Length = 330

Score = 60.8 bits (146), Expect = 3e-08
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Frame = +3

Query: 189 RNKVRVRNASANYGTLYMHTRVLSRKSC--GVKNELLVLTASDGNALSD*---------- 332
+N+ R +N + + YM + K G +++ + T SD + D
Sbjct: 177 KNRDRSKNKTNKFANRYMKQGKVKEKKNDNGGEDDQVATTTSDFLIVYDSDVVNFACQET 236

Query: 333 --IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKN 503
+IDSGAS+H +P K++FTSY + V +GN + + +G+GDV+L++ NG TLKN
Sbjct: 237 SWVIDSGASVHATPRKDFFTSYTSGDFGSVMMGNDGSAKAIGMGDVRLETSNGIMLTLKN 296

Query: 504 V 506
V
Sbjct: 297 V 297


>tr|A5BM67|A5BM67_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_028479 PE=4 SV=1
Length = 1144

Score = 59.7 bits (143), Expect = 8e-08
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Frame = +3

Query: 210 NASANYGTLYMHTRVLSRKSC-------------------GVKNELLVLTASDGNALSD* 332
N +N Y H + L RK C G +++ + T D
Sbjct: 211 NKFSNVECHYCHLKGLIRKYCRQLKRYMKQGKVKDKKNDNGGEDDQVATTTLDFLIEISW 270

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+IDSGAS+HV+P K++FTSY + VR+GN + + +G+G+V+L++ NG LKNV
Sbjct: 271 VIDSGASIHVTPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGNVRLETSNGIVLILKNV 329


>tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029099 PE=4 SV=1
Length = 649

Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSYVTTK-DHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
+IDSGAS+H +P K++FTSY + VR+GN + + +G+GDV L++ NG LKNV
Sbjct: 248 VIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVHLETSNGIVLILKNV 306


>tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g17390 PE=4 SV=1
Length = 1373

Score = 58.2 bits (139), Expect = 2e-07
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSY--VTTKDHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
I+DS S H+ + WF+SY V D VR+G+ C I+G+G VQ+K+ +G + TLKNV
Sbjct: 291 ILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNV 350


>tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g31920 PE=4 SV=1
Length = 1333

Score = 58.2 bits (139), Expect = 2e-07
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSY--VTTKDHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
I+DS S H+ + WF+SY V D VR+G+ C I+G+G VQ+K+ +G + TLKNV
Sbjct: 291 ILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNV 350


>tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g34770 PE=4 SV=1
Length = 1333

Score = 58.2 bits (139), Expect = 2e-07
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +3

Query: 333 IIDSGASLHVSPNKEWFTSY--VTTKDHVRLGNGQTCEILGVGDVQLKSQNGSSFTLKNV 506
I+DS S H+ + WF+SY V D VR+G+ C I+G+G VQ+K+ +G + TLKNV
Sbjct: 291 ILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNV 350